Ss1.1-LyN1-MLN01C040008.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCTTGCCGTGTCTGCTGCTGCTGATGGCCGCGGGGGCCGACGTCAACGCCCAGGAGCGG AAGTCAGGACGCACAGCGCTGCACCTGGCCGTGGAGCTCGACAACATCTCCTTGGCGGGC TGCCTGCTCTTGGAGGGTGATGCCCATGTAGACAGCACCACCTATGATGGAACTACACCC CTGCACATAGCGGCCGGGAGAGGGTCCACCAGGCTGGCAGCTCTCCTCAAAGCAGCAGGA GCAGATCCCCTGGTGGAGAACTTTGAGCCTCTGTATGACCTGGATGACTCGTGGGACGAG GATGGAGAGGATGAAGGCGTCGTGCCTGGAACTACACCTCTAGACATGGCCACCAACTGG CAGGTATTTGACATATTAAATGGGAAACCCTATGAGCCAGAGTTTACATCGGATGATTTA CTCGCACAAGGAGACATGAAGCAGCTGACTGAAGATACAAAGTTACAGCTCTACAAGTTG CTAGAAATTCCTGATCCTGACAAAAACTGGGCTACCCTGGCACAGAAATTAGGTCTGGGG ATACTGAATAATGCCTTCCGGCTGAGTGCTGCTCCTTCCAAAACTCTCATGGACAACTAC GAGGTCTCCGGGGGGACAATAAAGGAGCTGGTGGAGGCCCTGAGACAGATGGGCTACACT GAAGCCATTGACGTGATCCAGGCGGCCTTCTGCACCTCAGGAACCGCAGCCACCAGCCCT GTGAAGACCACCTCTCAGGCCCACTCGCTGCCCTTCTCGCCTGCCTCCACAAGGCAGCAA ATAGACGAGCTCCGGGATGACAGCATCTGTGACAGCGGTGTGGAGACGTCCTTTCGCAAA CTCAGCTTCACAGAGTCTCTGACCAGCAGCAGCTCATTGCTAACTCTCAACAAAGTGCCC CACGATTTCGGGCAGGAAGGACCTCTAGAAGGCAAAATTTAGCCTGCTGGCAGTTTCCAA CACCGCATAAACCAAAGCTCTTAGATTCTTCTGCATTGTCTACGGAAGGAAGATTAAGTG CATCCAGAGGTGCTCAGAGGAACCCTGGCCTGCCTGAATGGTTCTGGATGTAATTCAAGG CCTTTTAAACATGACATCCTTCTTGGTTCTAAATGAATTTTAGTTCAATTCACTTACAGC TAGTCTACAATCACAGCCCCTGGCGAGGCCGACTCCTCGTTGCGGGTGAGCTTTACCAGC TGCTTTCTGTTGTTATTGCTGCTGTCCCTCTGCTGTGTCTCCACTGCTTGTCATTAAAAG TTGTCACAGGGAGTTCCCTGGTGGCCTAGCAGTTAAGGATTCAGTGTTGTCACTGCTGTG GTGTGGGTTCCATCCCTGGCCCGGGAACTTCTGCATGCCGCGGGCACT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCTTGCCGTGTCTGCTGCTGCTGATGGCCGCGGGGGCCGACGTCAACGCCCAGGAGCGG AAGTCAGGACGCACAGCGCTGCACCTGGCCGTGGAGCTCGACAACATCTCCTTGGCGGGC TGCCTGCTCTTGGAGGGTGATGCCCATGTAGACAGCACCACCTATGATGGAACTACACCC CTGCACATAGCGGCCGGGAGAGGGTCCACCAGGCTGGCAGCTCTCCTCAAAGCAGCAGGA GCAGATCCCCTGGTGGAGAACTTTGAGCCTCTGTATGACCTGGATGACTCGTGGGACGAG GATGGAGAGGATGAAGGCGTCGTGCCTGGAACTACACCTCTAGACATGGCCACCAACTGG CAGGTATTTGACATATTAAATGGGAAACCCTATGAGCCAGAGTTTACATCGGATGATTTA CTCGCACAAGGAGACATGAAGCAGCTGACTGAAGATACAAAGTTACAGCTCTACAAGTTG CTAGAAATTCCTGATCCTGACAAAAACTGGGCTACCCTGGCACAGAAATTAGGTCTGGGG ATACTGAATAATGCCTTCCGGCTGAGTGCTGCTCCTTCCAAAACTCTCATGGACAACTAC GAGGTCTCCGGGGGGACAATAAAGGAGCTGGTGGAGGCCCTGAGACAGATGGGCTACACT GAAGCCATTGACGTGATCCAGGCGGCCTTCTGCACCTCAGGAACCGCAGCCACCAGCCCT GTGAAGACCACCTCTCAGGCCCACTCGCTGCCCTTCTCGCCTGCCTCCACAAGGCAGCAA ATAGACGAGCTCCGGGATGACAGCATCTGTGACAGCGGTGTGGAGACGTCCTTTCGCAAA CTCAGCTTCACAGAGTCTCTGACCAGCAGCAGCTCATTGCTAACTCTCAACAAAGTGCCC CACGATTTCGGGCAGGAAGGACCTCTAGAAGGCAAAATTTAGCCTGCTGGCAGTTTCCAA CACCGCATAAACCAAAGCTCTTAGATTCTTCTGCATTGTCTACGGAAGGAAGATTAAGTG CATCCAGAGGTGCTCAGAGGAACCCTGGCCTGCCTGAATGGTTCTGGATGTAATTCAAGG CCTTTTAAACATGACATCCTTCTTGGTTCTAAATGAATTTTAGTTCAATTCACTTACAGC TAGTCTACAATCACAGCCCCTGGCGAGGCCGACTCCTCGTTGCGGGTGAGCTTTACCAGC TGCTTTCTGTTGTTATTGCTGCTGTCCCTCTGCTGTGTCTCCACTGCTTGTCATTAAAAG TTGTCACAGGGAGTTCCCTGGTGGCCTAGCAGTTAAGGATTCAGTGTTGTCACTGCTGTG GTGTGGGTTCCATCCCTGGCCCGGGAACTTCTGCATGCCGCGGGCACT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 46-136, + strand, RNAz p=0.869219 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 46-136, + strand, RNAz p=0.869219 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 1-136, gnl|bosTau2|chr6 (7212969-7212834) | |
| 1-136, gnl|canFam2|chr32 (26953613-26953822) | |
| 1-136, gnl|danRer3|chrNA (152902077-152901899) | |
| 1-136, gnl|dasNov1|scaffold_17470 (53686-53894) | |
| 1-136, gnl|echTel1|scaffold_321808 (8188-8401) | |
| 1-136, gnl|galGal2|chr4 (61352000-61352236) | |
| 1-136, gnl|hg17|chr4 (103885485-103885694) | |
| 1-136, gnl|Hg17|chr4 (103885535-103885670) | |
| 1-136, gnl|loxAfr1|scaffold_188 (112884-112675) | |
| 1-136, gnl|mm7|chr3 (135388738-135388533) | |
| 1-136, gnl|Mm7|chr3 (135388687-135388552) | |
| 1-136, gnl|monDom2|scaffold_37 (9087506-9087313) | |
| 1-136, gnl|oryCun1|scaffold_201204 (49985-49788) | |
| 1-136, gnl|panTro1|chr3 (120280829-120281038) | |
| 1-136, gnl|rheMac2|chr5 (95586300-95586509) | |
| 1-136, gnl|rn3|chr2 (233087080-233086874) | |
| 1-136, gnl|tetNig1|chrUn_random (83752774-83752953) | |
| 1-136, gnl|xenTro1|scaffold_326 (440072-439864) | |
| 235-365, gnl|bosTau2|chr6 (7210591-7210461) | |
| 235-365, gnl|Hg17|chr4 (103888921-103889051) | |
| 235-365, gnl|Mm7|chr3 (135386026-135385896) | |
| 429-605, gnl|bosTau2|chr6 (7208577-7208401) | |
| 429-605, gnl|canFam2|chr32 (26959861-26960059) | |
| 429-605, gnl|danRer3|chrNA (152900085-152899912) | |
| 429-605, gnl|echTel1|scaffold_316904 (21403-21598) | |
| 429-605, gnl|galGal2|chr4 (61355417-61355611) | |
| 429-605, gnl|hg17|chr4 (103890772-103890971) | |
| 429-605, gnl|Hg17|chr4 (103890790-103890966) | |
| 429-605, gnl|loxAfr1|scaffold_188 (106748-106552) | |
| 429-605, gnl|mm7|chr3 (135384845-135384655) | |
| 429-605, gnl|Mm7|chr3 (135384833-135384658) | |
| 429-605, gnl|monDom2|scaffold_37 (9080990-9080791) | |
| 429-605, gnl|oryCun1|scaffold_201204 (45320-45122) | |
| 429-605, gnl|panTro1|chr3 (120286125-120286324) | |
| 429-605, gnl|rheMac2|chr5 (95591628-95591827) | |
| 429-605, gnl|rn3|chr2 (233083288-233083098) | |
| 429-605, gnl|tetNig1|chrUn_random (83753922-83754069) | |
| 429-605, gnl|xenTro1|scaffold_4982 (11737-11539) | |
| 783-1268, gnl|bosTau2|chr6 (7204867-7204374) | |
| 783-1268, gnl|Hg17|chr4 (103894790-103895304) | |
| 783-1268, gnl|Mm7|chr3 (135379861-135379348) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-136, gnl|bosTau2|chr6 (7212969-7212834) | |
| 1-136, gnl|canFam2|chr32 (26953613-26953822) | |
| 1-136, gnl|danRer3|chrNA (152902077-152901899) | |
| 1-136, gnl|dasNov1|scaffold_17470 (53686-53894) | |
| 1-136, gnl|echTel1|scaffold_321808 (8188-8401) | |
| 1-136, gnl|galGal2|chr4 (61352000-61352236) | |
| 1-136, gnl|hg17|chr4 (103885485-103885694) | |
| 1-136, gnl|Hg17|chr4 (103885535-103885670) | |
| 1-136, gnl|loxAfr1|scaffold_188 (112884-112675) | |
| 1-136, gnl|mm7|chr3 (135388738-135388533) | |
| 1-136, gnl|Mm7|chr3 (135388687-135388552) | |
| 1-136, gnl|monDom2|scaffold_37 (9087506-9087313) | |
| 1-136, gnl|oryCun1|scaffold_201204 (49985-49788) | |
| 1-136, gnl|panTro1|chr3 (120280829-120281038) | |
| 1-136, gnl|rheMac2|chr5 (95586300-95586509) | |
| 1-136, gnl|rn3|chr2 (233087080-233086874) | |
| 1-136, gnl|tetNig1|chrUn_random (83752774-83752953) | |
| 1-136, gnl|xenTro1|scaffold_326 (440072-439864) | |
| 235-365, gnl|bosTau2|chr6 (7210591-7210461) | |
| 235-365, gnl|Hg17|chr4 (103888921-103889051) | |
| 235-365, gnl|Mm7|chr3 (135386026-135385896) | |
| 429-605, gnl|bosTau2|chr6 (7208577-7208401) | |
| 429-605, gnl|canFam2|chr32 (26959861-26960059) | |
| 429-605, gnl|danRer3|chrNA (152900085-152899912) | |
| 429-605, gnl|echTel1|scaffold_316904 (21403-21598) | |
| 429-605, gnl|galGal2|chr4 (61355417-61355611) | |
| 429-605, gnl|hg17|chr4 (103890772-103890971) | |
| 429-605, gnl|Hg17|chr4 (103890790-103890966) | |
| 429-605, gnl|loxAfr1|scaffold_188 (106748-106552) | |
| 429-605, gnl|mm7|chr3 (135384845-135384655) | |
| 429-605, gnl|Mm7|chr3 (135384833-135384658) | |
| 429-605, gnl|monDom2|scaffold_37 (9080990-9080791) | |
| 429-605, gnl|oryCun1|scaffold_201204 (45320-45122) | |
| 429-605, gnl|panTro1|chr3 (120286125-120286324) | |
| 429-605, gnl|rheMac2|chr5 (95591628-95591827) | |
| 429-605, gnl|rn3|chr2 (233083288-233083098) | |
| 429-605, gnl|tetNig1|chrUn_random (83753922-83754069) | |
| 429-605, gnl|xenTro1|scaffold_4982 (11737-11539) | |
| 783-1268, gnl|bosTau2|chr6 (7204867-7204374) | |
| 783-1268, gnl|Hg17|chr4 (103894790-103895304) | |
| 783-1268, gnl|Mm7|chr3 (135379861-135379348) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| cut (0.679694) | |
| cki (0.330469) | |
| csk (0.281492) | |
| tra (0.246184) | |
| sto (0.179824) | |
| mga (0.160205) | |
| lin (0.145603) | |
| spl (0.143184) | |
| cst (0.140036) | |
| ute (0.132784) | |
| sug (0.127291) | |
| bla (0.124347) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cut (0.679694) | |
| cki (0.330469) | |
| csk (0.281492) | |
| tra (0.246184) | |
| sto (0.179824) | |
| mga (0.160205) | |
| lin (0.145603) | |
| spl (0.143184) | |
| cst (0.140036) | |
| ute (0.132784) | |
| sug (0.127291) | |
| bla (0.124347) |