Non-Coding RNA Search

Ss1.1-LyN1-MLN01C040039.5

Sequence:


               
               TTGCTGCAGCCATGGCATGGGTCACAACTCCAGCAGTTCAGATCTGGTCCCTGGCCCGGG
AACTTAGTATGCCGTGGGGCGGCCAAAAAAAAATGGAGTTCCCACTGTGGCACATCAGGA
TCGGTGGTGTCTGTAGAGCACTAGAGCGAAAGTTCGATCCCTGGCCCAGCACAGTGGGTT
CGAGATCCAGTGCTGTCACAGATGTGGCTCGCATCTCATCCCTGGCCTGGGAACTCTATA
TGCCTCCGGGGAGCCAAAAAAGAAAAATAAAAAATCTCTTTAAGAATGAGGAGTAGCAGA
GAGAATATTTAAAAGGTTAGCTTCTAATGGATTTAACTTGGCTTTGACATCCAGTATTTG
GAAAGGTCTTAAAGAAAACTCTTCTTATTTCAGGAATCCTTTTTCAAATACTTGCTATCC
CAGGGAGATTAGCTTATACCTTCCAACCCCAGCAGTGGTCAGCCTCAGCTGCTTTAGATA
ATGAAATCTACCTTGTCCCTTGGTGTTTTCAGCTCTTGGGATTCGATTCAAGTCCAGTCA
AGTCTCCTTGGCGGGGGTTTTGTCCTGTGAACAGATCCTCAGTTGTGTCTGCATTCACTC
GTGACTCTATACTTGCTTGCTCGGAGCAGAGTTAGGTCAGCTCCTAAAAATGCATTCCAC
AGAAGACTTCAAAACATCAATTGCTTCATTTGTATGCAAATACAAAGTGGTGGATAATTA
TATATTATACGCCTTTGTGTAAGTTCATTTAATACTTGAAGTAGTCTTTGTCTCAAAGGA
GTGTGCCCTTACTGAGAAAAAGGGTATGTGAATGGTACGTTTATTCTCAGAGAGGATGGA
TTGTTTACATCATGTCTGGACTTTTGTCTAGTTGGGTAGACAGTTCTCCTACACCACAAA
AAAGTCTTCATAGATAAAGAAGTCTACATAGGCACTGTTTTGTGTCTTATCGTACACTTT
TGAATTTTAGCCAACAGAGAAATAAGCATTTGAACTTTGTTTAACTGTGGATCAAGAGAC
TAATGGTTGAAAGGAGGAGGATTAAAAACAACTCATTTAGTTCTTGAACTGGGAACGGAA
GGTCTCTATGTGATCGTCCACCACAGCTCTGCCCTCAACTGCAAGTGGGTTATGGTTAAT
CTGACATGCAGTCTGTTTCTTGCTCTCGCCTGTAACCAGCAGGAAGTGTTTGTATTCAGC
AGAGTTGAACTCAAGAGGAAATACTTTTAAAATGCCAGAACGAGGAGTTCCCGTGTGGCT
CAGTGGGTTAAGGAGCCAGCGTCACTGCAGCTGCCGTGGCACAGATTTGATCCATGGCCT
GGAAACTTCCATTTGCTGCAGGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGCTGCAGCCATGGCATGGGTCACAACTCCAGCAGTTCAGATCTGGTCCCTGGCCCGGG
AACTTAGTATGCCGTGGGGCGGCCAAAAAAAAATGGAGTTCCCACTGTGGCACATCAGGA
TCGGTGGTGTCTGTAGAGCACTAGAGCGAAAGTTCGATCCCTGGCCCAGCACAGTGGGTT
CGAGATCCAGTGCTGTCACAGATGTGGCTCGCATCTCATCCCTGGCCTGGGAACTCTATA
TGCCTCCGGGGAGCCAAAAAAGAAAAATAAAAAATCTCTTTAAGAATGAGGAGTAGCAGA
GAGAATATTTAAAAGGTTAGCTTCTAATGGATTTAACTTGGCTTTGACATCCAGTATTTG
GAAAGGTCTTAAAGAAAACTCTTCTTATTTCAGGAATCCTTTTTCAAATACTTGCTATCC
CAGGGAGATTAGCTTATACCTTCCAACCCCAGCAGTGGTCAGCCTCAGCTGCTTTAGATA
ATGAAATCTACCTTGTCCCTTGGTGTTTTCAGCTCTTGGGATTCGATTCAAGTCCAGTCA
AGTCTCCTTGGCGGGGGTTTTGTCCTGTGAACAGATCCTCAGTTGTGTCTGCATTCACTC
GTGACTCTATACTTGCTTGCTCGGAGCAGAGTTAGGTCAGCTCCTAAAAATGCATTCCAC
AGAAGACTTCAAAACATCAATTGCTTCATTTGTATGCAAATACAAAGTGGTGGATAATTA
TATATTATACGCCTTTGTGTAAGTTCATTTAATACTTGAAGTAGTCTTTGTCTCAAAGGA
GTGTGCCCTTACTGAGAAAAAGGGTATGTGAATGGTACGTTTATTCTCAGAGAGGATGGA
TTGTTTACATCATGTCTGGACTTTTGTCTAGTTGGGTAGACAGTTCTCCTACACCACAAA
AAAGTCTTCATAGATAAAGAAGTCTACATAGGCACTGTTTTGTGTCTTATCGTACACTTT
TGAATTTTAGCCAACAGAGAAATAAGCATTTGAACTTTGTTTAACTGTGGATCAAGAGAC
TAATGGTTGAAAGGAGGAGGATTAAAAACAACTCATTTAGTTCTTGAACTGGGAACGGAA
GGTCTCTATGTGATCGTCCACCACAGCTCTGCCCTCAACTGCAAGTGGGTTATGGTTAAT
CTGACATGCAGTCTGTTTCTTGCTCTCGCCTGTAACCAGCAGGAAGTGTTTGTATTCAGC
AGAGTTGAACTCAAGAGGAAATACTTTTAAAATGCCAGAACGAGGAGTTCCCGTGTGGCT
CAGTGGGTTAAGGAGCCAGCGTCACTGCAGCTGCCGTGGCACAGATTTGATCCATGGCCT
GGAAACTTCCATTTGCTGCAGGAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               792-939, + strand, RNAz p=0.94535

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               792-939, + strand, RNAz p=0.94535

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               269-1037, gnl|bosTau2|chr17 (29064405-29065199)
               

               
               269-1037, gnl|Hg17|chr12 (121239660-121238896)
               

               
               269-1037, gnl|Mm7|chr5 (122775612-122774847)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               269-1037, gnl|bosTau2|chr17 (29064405-29065199)
               

               
               269-1037, gnl|Hg17|chr12 (121239660-121238896)
               

               
               269-1037, gnl|Mm7|chr5 (122775612-122774847)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               csp (0.161186)
               

               
               spc (0.113366)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.161186)
               

               
               spc (0.113366)

	269-1037, gnl\|bosTau2\|chr17 (29064405-29065199)
	269-1037, gnl\|Hg17\|chr12 (121239660-121238896)
	269-1037, gnl\|Mm7\|chr5 (122775612-122774847)