Ss1.1-LyN1-MLN01C040066.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCGGAGTATGTGCAGAAAGGCTTCCAGATGCTGGCAGATCCCGGCTCCTTCGACTCCAA CGCCTTCACGCTTCTCCTCCGGGCGGCTTTCCAGAGCCTGCTGGACGCCCAGGCGGACGA GGCCGTGTTAGATCACCCAGACTTGAAATGTATCGACCCAGTGGTTTTAAAACATTGTCA TGCCGCAGCTGCAACTTACATACTGGAGGCTGGAAAGCAAAGAGCTGACAAATCAACTCT AAGCACTTACCTAGAAGACTGTAAATTTGATAGAGAGAGAATAGAATTGTTTTGCACAGA ATATCAGGTCAGGTCACTTACTTAAATTTTTAAAAATTAACAGTTACTGTTTTTCTTCTA TTCAGTTTGCAAAGATGTGTTTTTCTTCTTCTTCTTTTTTTTTTCCTCCCAGAATAATAG AAATTCCCTAGAAATCCTACTGGGAAGGTAGGTACTGTATAAGGTGTCAAGCTGAGCCAC TTTTCACTTGCAGGTATGAATGGAGAGTGCTGGTGTGAAACAAAACAGGACAAAACTGGG AGCTAGACCAAAAGAAAAGGGGCCAGATCCCGGCTCCTTCGACTCCAACGCCTTCACGCT TCTCCTCCGGGCCGGCGCGCTCACAATGGAGCTCTCGGAGTATGTGCAGAAAGGCTTCCA GATGCTGGCAGATCCCGGCTCCTTCGACTCCAACGCCTTCACGCTTCTCCTCCGGGCGGC TTTCCAGAGCCTGCTGGACGCCCAGGCGGACGAGGCCGTGTTAGATCACCCAGACTTGAA ATGTATCGACCCAGTGGTTTTAAAACATTGTCATGCCGCAGCTGCAACTTACATACTGGA GGCTGGAAAGCAAAGAGCTGACAAATCAACTCTAAGCACTTACCTAGAAGACTGTAAATT TGATAGAGAGAGAATAGAATTGTTTTGCACAGAATATCAGAATAATAGAAATTCCCTAGA AATCCTACTGGGAAGTATAGGCAGATCTCTCCCTCATATAACTGATGTTTCTTGGCGTTT GGAATATCAGATAAAGACCAGTCAGCTTCATAAGATGTACAGACCTGCATATTTGGTGAC CTTAAATGTAGAGAACACTGATTTCCCATCCCACCCAGAGATTAATTTTAGTTGCAACAT GGAACAATTACAGGACTTAGTAGGAAAACTTAAAGATGCTTCGAAAAGCCTGGAAAGAGC AACTCAGTTGTAACTTGGGGAAGTTAAAGATCTGCCCGGGTCTAGAGAAAGACCAGGAAC GCCTTGCCATCCGCCGAACCACCATTTGTGCGAGCTGGATGTATTCCTTTTCAAGAGAAT AAATTTTTTCTTTTTGATTTCTGTCACTCAACAATTTTGACACTACTTTTTTTTTTACAT GTGTGAAAGGGTTGAGAGGGACATTCTGCCTAAGTATATGAATCGTCTTTAGTATTATTC GTACATTGATCCCACTTGATTTTTTCAAGTCTTACAAGAGGAAGCAGACAGTATTACATT TTGAATAAATAAGTTGTTCCCACAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCGGAGTATGTGCAGAAAGGCTTCCAGATGCTGGCAGATCCCGGCTCCTTCGACTCCAA CGCCTTCACGCTTCTCCTCCGGGCGGCTTTCCAGAGCCTGCTGGACGCCCAGGCGGACGA GGCCGTGTTAGATCACCCAGACTTGAAATGTATCGACCCAGTGGTTTTAAAACATTGTCA TGCCGCAGCTGCAACTTACATACTGGAGGCTGGAAAGCAAAGAGCTGACAAATCAACTCT AAGCACTTACCTAGAAGACTGTAAATTTGATAGAGAGAGAATAGAATTGTTTTGCACAGA ATATCAGGTCAGGTCACTTACTTAAATTTTTAAAAATTAACAGTTACTGTTTTTCTTCTA TTCAGTTTGCAAAGATGTGTTTTTCTTCTTCTTCTTTTTTTTTTCCTCCCAGAATAATAG AAATTCCCTAGAAATCCTACTGGGAAGGTAGGTACTGTATAAGGTGTCAAGCTGAGCCAC TTTTCACTTGCAGGTATGAATGGAGAGTGCTGGTGTGAAACAAAACAGGACAAAACTGGG AGCTAGACCAAAAGAAAAGGGGCCAGATCCCGGCTCCTTCGACTCCAACGCCTTCACGCT TCTCCTCCGGGCCGGCGCGCTCACAATGGAGCTCTCGGAGTATGTGCAGAAAGGCTTCCA GATGCTGGCAGATCCCGGCTCCTTCGACTCCAACGCCTTCACGCTTCTCCTCCGGGCGGC TTTCCAGAGCCTGCTGGACGCCCAGGCGGACGAGGCCGTGTTAGATCACCCAGACTTGAA ATGTATCGACCCAGTGGTTTTAAAACATTGTCATGCCGCAGCTGCAACTTACATACTGGA GGCTGGAAAGCAAAGAGCTGACAAATCAACTCTAAGCACTTACCTAGAAGACTGTAAATT TGATAGAGAGAGAATAGAATTGTTTTGCACAGAATATCAGAATAATAGAAATTCCCTAGA AATCCTACTGGGAAGTATAGGCAGATCTCTCCCTCATATAACTGATGTTTCTTGGCGTTT GGAATATCAGATAAAGACCAGTCAGCTTCATAAGATGTACAGACCTGCATATTTGGTGAC CTTAAATGTAGAGAACACTGATTTCCCATCCCACCCAGAGATTAATTTTAGTTGCAACAT GGAACAATTACAGGACTTAGTAGGAAAACTTAAAGATGCTTCGAAAAGCCTGGAAAGAGC AACTCAGTTGTAACTTGGGGAAGTTAAAGATCTGCCCGGGTCTAGAGAAAGACCAGGAAC GCCTTGCCATCCGCCGAACCACCATTTGTGCGAGCTGGATGTATTCCTTTTCAAGAGAAT AAATTTTTTCTTTTTGATTTCTGTCACTCAACAATTTTGACACTACTTTTTTTTTTACAT GTGTGAAAGGGTTGAGAGGGACATTCTGCCTAAGTATATGAATCGTCTTTAGTATTATTC GTACATTGATCCCACTTGATTTTTTCAAGTCTTACAAGAGGAAGCAGACAGTATTACATT TTGAATAAATAAGTTGTTCCCACAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 353-467, + strand, RNAz p=0.942063 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 353-467, + strand, RNAz p=0.942063 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 242-565, gnl|bosTau2|chr1 (58487659-58487350) | |
| 242-565, gnl|Hg17|chr10 (22647038-22647352) | |
| 242-565, gnl|Mm7|chr2 (18739282-18739596) | |
| 762-876, gnl|bosTau2|chr1 (58487876-58487762) | |
| 762-876, gnl|canFam2|chr2 (13721401-13721282) | |
| 762-876, gnl|danRer3|chr24 (10414828-10414710) | |
| 762-876, gnl|dasNov1|scaffold_2560 (36307-36188) | |
| 762-876, gnl|echTel1|scaffold_319906 (215402-215521) | |
| 762-876, gnl|fr1|chrUn (48746954-48747072) | |
| 762-876, gnl|hg17|chr10 (22646816-22646935) | |
| 762-876, gnl|Hg17|chr10 (22646816-22646930) | |
| 762-876, gnl|loxAfr1|scaffold_964 (114556-114675) | |
| 762-876, gnl|mm7|chr2 (18739051-18739170) | |
| 762-876, gnl|Mm7|chr2 (18739051-18739165) | |
| 762-876, gnl|monDom2|scaffold_7 (46596138-46596019) | |
| 762-876, gnl|oryCun1|scaffold_201828 (11702-11818) | |
| 762-876, gnl|panTro1|chr8 (22844360-22844479) | |
| 762-876, gnl|rheMac2|chr9 (22515035-22515154) | |
| 762-876, gnl|rn3|chr17 (92787712-92787831) | |
| 762-876, gnl|tetNig1|chr6 (1191804-1191685) | |
| 762-876, gnl|xenTro1|scaffold_42 (2658167-2658048) | |
| 1148-1528, gnl|bosTau2|chr1 (58485857-58485490) | |
| 1148-1528, gnl|Hg17|chr10 (22648868-22649241) | |
| 1148-1528, gnl|Mm7|chr2 (18741020-18741382) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 242-565, gnl|bosTau2|chr1 (58487659-58487350) | |
| 242-565, gnl|Hg17|chr10 (22647038-22647352) | |
| 242-565, gnl|Mm7|chr2 (18739282-18739596) | |
| 762-876, gnl|bosTau2|chr1 (58487876-58487762) | |
| 762-876, gnl|canFam2|chr2 (13721401-13721282) | |
| 762-876, gnl|danRer3|chr24 (10414828-10414710) | |
| 762-876, gnl|dasNov1|scaffold_2560 (36307-36188) | |
| 762-876, gnl|echTel1|scaffold_319906 (215402-215521) | |
| 762-876, gnl|fr1|chrUn (48746954-48747072) | |
| 762-876, gnl|hg17|chr10 (22646816-22646935) | |
| 762-876, gnl|Hg17|chr10 (22646816-22646930) | |
| 762-876, gnl|loxAfr1|scaffold_964 (114556-114675) | |
| 762-876, gnl|mm7|chr2 (18739051-18739170) | |
| 762-876, gnl|Mm7|chr2 (18739051-18739165) | |
| 762-876, gnl|monDom2|scaffold_7 (46596138-46596019) | |
| 762-876, gnl|oryCun1|scaffold_201828 (11702-11818) | |
| 762-876, gnl|panTro1|chr8 (22844360-22844479) | |
| 762-876, gnl|rheMac2|chr9 (22515035-22515154) | |
| 762-876, gnl|rn3|chr17 (92787712-92787831) | |
| 762-876, gnl|tetNig1|chr6 (1191804-1191685) | |
| 762-876, gnl|xenTro1|scaffold_42 (2658167-2658048) | |
| 1148-1528, gnl|bosTau2|chr1 (58485857-58485490) | |
| 1148-1528, gnl|Hg17|chr10 (22648868-22649241) | |
| 1148-1528, gnl|Mm7|chr2 (18741020-18741382) |
| Expressed library(ies): 60 entry(ies) | More info |
| Expressed library(ies): 60 entry(ies) | Help | Less info |
| ret (1.02987) | |
| cbe (0.956938) | |
| mga (0.801025) | |
| gul (0.710353) | |
| tbr (0.616713) | |
| lin (0.582411) | |
| nlu (0.575043) | |
| cmu (0.55918) | |
| sag (0.548145) | |
| sin (0.524843) | |
| mgp (0.461361) | |
| aor (0.390549) | |
| col (0.390016) | |
| elu (0.385356) | |
| sug (0.381874) | |
| bla (0.373042) | |
| sto (0.359648) | |
| cut (0.339847) | |
| vin (0.332557) | |
| csp (0.322373) | |
| cte (0.29274) | |
| liv (0.292569) | |
| cga (0.279096) | |
| che (0.272628) | |
| pla (0.267344) | |
| lyg (0.266205) | |
| kid (0.259471) | |
| thg (0.253582) | |
| pgl (0.236967) | |
| med (0.232504) | |
| spc (0.226732) | |
| hea (0.204499) | |
| fli (0.202881) | |
| nbm (0.198649) | |
| ldo (0.194005) | |
| mgm (0.180343) | |
| ill (0.175593) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| cki (0.165235) | |
| cje (0.165235) | |
| nco (0.161734) | |
| fco (0.157208) | |
| eli (0.151814) | |
| lun (0.150489) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| ski (0.146735) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| ecc (0.115035) | |
| cbl (0.114797) | |
| jca (0.11396) | |
| cty (0.10408) | |
| jej (0.0989218) | |
| eje (0.0988338) |
| Expressed library(ies): 60 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ret (1.02987) | |
| cbe (0.956938) | |
| mga (0.801025) | |
| gul (0.710353) | |
| tbr (0.616713) | |
| lin (0.582411) | |
| nlu (0.575043) | |
| cmu (0.55918) | |
| sag (0.548145) | |
| sin (0.524843) | |
| mgp (0.461361) | |
| aor (0.390549) | |
| col (0.390016) | |
| elu (0.385356) | |
| sug (0.381874) | |
| bla (0.373042) | |
| sto (0.359648) | |
| cut (0.339847) | |
| vin (0.332557) | |
| csp (0.322373) | |
| cte (0.29274) | |
| liv (0.292569) | |
| cga (0.279096) | |
| che (0.272628) | |
| pla (0.267344) | |
| lyg (0.266205) | |
| kid (0.259471) | |
| thg (0.253582) | |
| pgl (0.236967) | |
| med (0.232504) | |
| spc (0.226732) | |
| hea (0.204499) | |
| fli (0.202881) | |
| nbm (0.198649) | |
| ldo (0.194005) | |
| mgm (0.180343) | |
| ill (0.175593) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| cki (0.165235) | |
| cje (0.165235) | |
| nco (0.161734) | |
| fco (0.157208) | |
| eli (0.151814) | |
| lun (0.150489) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| ski (0.146735) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| ecc (0.115035) | |
| cbl (0.114797) | |
| jca (0.11396) | |
| cty (0.10408) | |
| jej (0.0989218) | |
| eje (0.0988338) |