Non-Coding RNA Search

Ss1.1-LyN1-MLN01C040092.5

Sequence:


               
               ACTCTCGGTGATGAAGGTGCCCGCTGGACCCCCTCCCGCCTCCCAGTGCTTTGCTCATCC
CCCCTCCCCTTCCCAGTTACCAAAGACTCGAGCTTCCAGACAGGGACCCAGGGACACCTC
GAAGCCCACCGACAAACTCCCACCCCCTGCTCGTCCCTCTCCTGGGGGAGCAGCAGGGGC
CAGGGAGCTGCCCCAGGAGTGGGCCAGGCCGGGCCACAGCAATAGGAAAGCCGGGGCCAG
AGGCAGCCGTGCCAGCCCCACTGCCAATGCCAAATATTGGAGAAAAGGGAACTTTTGCTG
AGGTTTTCTCTGAGATTTTTTGATGCTTTATAGGAAACTTATTTTTTTAAAAAGCCCTTT
CCTACCCCGAGACACACTGGATGTGTTTTCCCTGGCAGGGAATGTAGCTGGGAGGGTGGG
CGGTCTGGGCCCTGGTGCCCTCTTCCCTGCCCGGGCCACCTTCGCCTCCTTGTTCCCTTG
GCACCTTGTCTGTCTGCCTGCCCACCTGTACCCTTTGCAGCCCACTCCAGCATCCCCCTG
GGGCTGAGACCATCCTTGCCTGGCCCCTCCTTCCTGCCTTAAAGATGCCCTTCTAATGTC
ATGCCAACCTGAGGGCATCCTGGAGTGGGGGCAGGACTCTTAGACTGTATATTTTAGAAG
CTCTGAGAGATCATCCAGTCTAGCTGCCTAGTGTGACAGAGCAAGAGACAGAGGCCCAAA
GAGGGGAGGAGACTCGCCCAAGGTCATCCAGCAGGCTGGGGCAAAACCAGACTGCAGCTT
TGTCCTCAGCTCACCTCACCTCCTCTCCCAGGGACAGGGGGGCCCATGAAACAGGCTCGT
GTCTTAAGGGTGCACATGGCTCCCTGACCAGCAATCACCCTCGGGGGCCACCAGGTGGGA
GGAGCCCTCCCGCCTGAGTTCTTGCCTTAGGATGACAAACACCCTGCCCATATACTTCGG
GCCCAGTTCCAGGACGAAGGGCCTTCACAGGCCCCTGCACCCCTCCCCATCCTGGGACCC
TGGGGGAGGGGCTGGCCTTGGGAGGAGCTGCAGGGGCATCACCTCTTTCTGCTGCTTCTC
CCCCCACCCACCCCTACCTCCCCAGAGGGCCTAGGGCCTGCCCAGCTGCCTCTGCCCTCC
TGGGAGTCTCAGTCCACTGCTGACACTTCTGCGATCCAGAGAAACACTAAATAAAGCAAT
ATGTGTTTGCCAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTCTCGGTGATGAAGGTGCCCGCTGGACCCCCTCCCGCCTCCCAGTGCTTTGCTCATCC
CCCCTCCCCTTCCCAGTTACCAAAGACTCGAGCTTCCAGACAGGGACCCAGGGACACCTC
GAAGCCCACCGACAAACTCCCACCCCCTGCTCGTCCCTCTCCTGGGGGAGCAGCAGGGGC
CAGGGAGCTGCCCCAGGAGTGGGCCAGGCCGGGCCACAGCAATAGGAAAGCCGGGGCCAG
AGGCAGCCGTGCCAGCCCCACTGCCAATGCCAAATATTGGAGAAAAGGGAACTTTTGCTG
AGGTTTTCTCTGAGATTTTTTGATGCTTTATAGGAAACTTATTTTTTTAAAAAGCCCTTT
CCTACCCCGAGACACACTGGATGTGTTTTCCCTGGCAGGGAATGTAGCTGGGAGGGTGGG
CGGTCTGGGCCCTGGTGCCCTCTTCCCTGCCCGGGCCACCTTCGCCTCCTTGTTCCCTTG
GCACCTTGTCTGTCTGCCTGCCCACCTGTACCCTTTGCAGCCCACTCCAGCATCCCCCTG
GGGCTGAGACCATCCTTGCCTGGCCCCTCCTTCCTGCCTTAAAGATGCCCTTCTAATGTC
ATGCCAACCTGAGGGCATCCTGGAGTGGGGGCAGGACTCTTAGACTGTATATTTTAGAAG
CTCTGAGAGATCATCCAGTCTAGCTGCCTAGTGTGACAGAGCAAGAGACAGAGGCCCAAA
GAGGGGAGGAGACTCGCCCAAGGTCATCCAGCAGGCTGGGGCAAAACCAGACTGCAGCTT
TGTCCTCAGCTCACCTCACCTCCTCTCCCAGGGACAGGGGGGCCCATGAAACAGGCTCGT
GTCTTAAGGGTGCACATGGCTCCCTGACCAGCAATCACCCTCGGGGGCCACCAGGTGGGA
GGAGCCCTCCCGCCTGAGTTCTTGCCTTAGGATGACAAACACCCTGCCCATATACTTCGG
GCCCAGTTCCAGGACGAAGGGCCTTCACAGGCCCCTGCACCCCTCCCCATCCTGGGACCC
TGGGGGAGGGGCTGGCCTTGGGAGGAGCTGCAGGGGCATCACCTCTTTCTGCTGCTTCTC
CCCCCACCCACCCCTACCTCCCCAGAGGGCCTAGGGCCTGCCCAGCTGCCTCTGCCCTCC
TGGGAGTCTCAGTCCACTGCTGACACTTCTGCGATCCAGAGAAACACTAAATAAAGCAAT
ATGTGTTTGCCAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               79-196, - strand, RNAz p=0.947982
               

               
               95-200, - strand, RNAz p=0.628971

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               79-196, - strand, RNAz p=0.947982
               

               
               95-200, - strand, RNAz p=0.628971

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               117-235, - strand, RNAmicro p=0.999956

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               117-235, - strand, RNAmicro p=0.999956

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-367, gnl|bosTau2|chr19 (17113783-17113414)
               

               
               1-367, gnl|canFam2|chr9 (48960944-48961454)
               

               
               1-367, gnl|dasNov1|scaffold_7683 (6817-7318)
               

               
               1-367, gnl|echTel1|scaffold_314452 (5923-5393)
               

               
               1-367, gnl|hg17|chr17 (1315157-1315678)
               

               
               1-367, gnl|Hg17|chr17 (1315780-1315415)
               

               
               1-367, gnl|loxAfr1|scaffold_5401 (75423-74903)
               

               
               1-367, gnl|mm7|chr11 (75754787-75754304)
               

               
               1-367, gnl|Mm7|chr11 (75754200-75754563)
               

               
               1-367, gnl|monDom2|scaffold_86 (2610067-2610652)
               

               
               1-367, gnl|oryCun1|scaffold_179001 (84078-83580)
               

               
               1-367, gnl|panTro1|chr19 (1450936-1451457)
               

               
               1-367, gnl|rheMac2|chr16 (1257099-1257612)
               

               
               1-367, gnl|rn3|chr10 (63020721-63020232)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-367, gnl|bosTau2|chr19 (17113783-17113414)
               

               
               1-367, gnl|canFam2|chr9 (48960944-48961454)
               

               
               1-367, gnl|dasNov1|scaffold_7683 (6817-7318)
               

               
               1-367, gnl|echTel1|scaffold_314452 (5923-5393)
               

               
               1-367, gnl|hg17|chr17 (1315157-1315678)
               

               
               1-367, gnl|Hg17|chr17 (1315780-1315415)
               

               
               1-367, gnl|loxAfr1|scaffold_5401 (75423-74903)
               

               
               1-367, gnl|mm7|chr11 (75754787-75754304)
               

               
               1-367, gnl|Mm7|chr11 (75754200-75754563)
               

               
               1-367, gnl|monDom2|scaffold_86 (2610067-2610652)
               

               
               1-367, gnl|oryCun1|scaffold_179001 (84078-83580)
               

               
               1-367, gnl|panTro1|chr19 (1450936-1451457)
               

               
               1-367, gnl|rheMac2|chr16 (1257099-1257612)
               

               
               1-367, gnl|rn3|chr10 (63020721-63020232)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

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               amn (0.417711)
               

               
               elu (0.385356)
               

               
               clu (0.239292)
               

               
               ece (0.229305)
               

               
               cag (0.151194)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               nbm (0.0993246)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               elu (0.385356)
               

               
               clu (0.239292)
               

               
               ece (0.229305)
               

               
               cag (0.151194)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               nbm (0.0993246)

	79-196, - strand, RNAz p=0.947982
	95-200, - strand, RNAz p=0.628971

	1-367, gnl\|bosTau2\|chr19 (17113783-17113414)
	1-367, gnl\|canFam2\|chr9 (48960944-48961454)
	1-367, gnl\|dasNov1\|scaffold_7683 (6817-7318)
	1-367, gnl\|echTel1\|scaffold_314452 (5923-5393)
	1-367, gnl\|hg17\|chr17 (1315157-1315678)
	1-367, gnl\|Hg17\|chr17 (1315780-1315415)
	1-367, gnl\|loxAfr1\|scaffold_5401 (75423-74903)
	1-367, gnl\|mm7\|chr11 (75754787-75754304)
	1-367, gnl\|Mm7\|chr11 (75754200-75754563)
	1-367, gnl\|monDom2\|scaffold_86 (2610067-2610652)
	1-367, gnl\|oryCun1\|scaffold_179001 (84078-83580)
	1-367, gnl\|panTro1\|chr19 (1450936-1451457)
	1-367, gnl\|rheMac2\|chr16 (1257099-1257612)
	1-367, gnl\|rn3\|chr10 (63020721-63020232)

	amn (0.417711)
	elu (0.385356)
	clu (0.239292)
	ece (0.229305)
	cag (0.151194)
	pla (0.133672)
	ese (0.126502)
	eep (0.122564)
	eru (0.120048)
	nbm (0.0993246)