Non-Coding RNA Search

Ss1.1-LyN1-MLN01C050033.5

Sequence:


               
               GTTTTTTTCTTTGCTGTGAAAGTAACCCTAAATAAAATATGATGTTTTCCAGTTTTTTTT
TTTTTTTTTTTAAGCCATCAGAGGTTTCAGATCTCGGGTTTTTTTCATGTTTAAGAAGAG
AAAGCATAACAGGACAGGAGAGTAGACTCGTATTTGTGGGGTGGCGGTCTCTCCATTGCC
TCCCCTATGTATGCAGCCACAGCAGACCCGTGTTTAACCCTTGTTTCGAGGCGACGCCAT
CTATTCCAGCTCTAGTTCCAGGGTGGGGAGTGTCTGGATTTCTCTCTTCCGGAAGATCCA
TCCCCTCCAGGATCTCCAGAATGTTTTCTGCCTGAGACCTTGAATTCTCAACCTTTCTTG
GTTCACACACAAACACACACACACACACATTCTGAATAACTGAGTAGCATTCTGTTGATC
ATAAGGAGAATTAGTCCCTGGCATTTCAGTTTTGTGCTGTAGAATTCATAGCCTTGTCAC
TTCGCGATGCTCTGGAAGTGAACTGATTTCTTACTTGGAAGGAAGCTCATCCGAGACGTG
CAGACAGCCTCCCTGAGAGGCATGCACCTCCTTCCTTGAGGCCTGAAGAGCTGACATTAG
GGAGAGGGAGAGTGTTTAGCAAGCGCTGCTTGTGGGGATCCGTCAGCTACTGCGCTCCTA
GACTTGGCCACACCAAGGCCAGACCAGAATCCTTTTGAACTGCTTCTTCACAACCCCCCC
AGCTCTTCCTCATCTTACAGAGAAACCCTGCATCTGTCAAGAAGCCCTTTTTAGTTTGAG
CTCACTGATCTTTGTCTGGTGACGACTTCCTTTGACAGGAAGAAGCTTGATCATAAGCGC
ACGTATATTCACCACCCACCTTCTGATTTGCGTGCTGGCGCCCTTCGGGTTTTATTTCTG
TTGTTTGTGTGGAGGCCCCTTTTCTGTCAGTTTCCTTCTTCTGATCCCTCCTGAGTTCTT
CCTGCCCTTTCATCCCTCTGCGCTGCTCCCAAAGGGCTCTGCTGATCTCGCACTTCTGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTTTTTCTTTGCTGTGAAAGTAACCCTAAATAAAATATGATGTTTTCCAGTTTTTTTT
TTTTTTTTTTTAAGCCATCAGAGGTTTCAGATCTCGGGTTTTTTTCATGTTTAAGAAGAG
AAAGCATAACAGGACAGGAGAGTAGACTCGTATTTGTGGGGTGGCGGTCTCTCCATTGCC
TCCCCTATGTATGCAGCCACAGCAGACCCGTGTTTAACCCTTGTTTCGAGGCGACGCCAT
CTATTCCAGCTCTAGTTCCAGGGTGGGGAGTGTCTGGATTTCTCTCTTCCGGAAGATCCA
TCCCCTCCAGGATCTCCAGAATGTTTTCTGCCTGAGACCTTGAATTCTCAACCTTTCTTG
GTTCACACACAAACACACACACACACACATTCTGAATAACTGAGTAGCATTCTGTTGATC
ATAAGGAGAATTAGTCCCTGGCATTTCAGTTTTGTGCTGTAGAATTCATAGCCTTGTCAC
TTCGCGATGCTCTGGAAGTGAACTGATTTCTTACTTGGAAGGAAGCTCATCCGAGACGTG
CAGACAGCCTCCCTGAGAGGCATGCACCTCCTTCCTTGAGGCCTGAAGAGCTGACATTAG
GGAGAGGGAGAGTGTTTAGCAAGCGCTGCTTGTGGGGATCCGTCAGCTACTGCGCTCCTA
GACTTGGCCACACCAAGGCCAGACCAGAATCCTTTTGAACTGCTTCTTCACAACCCCCCC
AGCTCTTCCTCATCTTACAGAGAAACCCTGCATCTGTCAAGAAGCCCTTTTTAGTTTGAG
CTCACTGATCTTTGTCTGGTGACGACTTCCTTTGACAGGAAGAAGCTTGATCATAAGCGC
ACGTATATTCACCACCCACCTTCTGATTTGCGTGCTGGCGCCCTTCGGGTTTTATTTCTG
TTGTTTGTGTGGAGGCCCCTTTTCTGTCAGTTTCCTTCTTCTGATCCCTCCTGAGTTCTT
CCTGCCCTTTCATCCCTCTGCGCTGCTCCCAAAGGGCTCTGCTGATCTCGCACTTCTGTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               481-581, - strand, RNAz p=0.864393

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               481-581, - strand, RNAz p=0.864393

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               5-1020, gnl|bosTau2|chr5 (70157549-70156569)
               

               
               5-1020, gnl|Hg17|chr22 (39053347-39054691)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-1020, gnl|bosTau2|chr5 (70157549-70156569)
               

               
               5-1020, gnl|Hg17|chr22 (39053347-39054691)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hlv (0.139256)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.139256)

	5-1020, gnl\|bosTau2\|chr5 (70157549-70156569)
	5-1020, gnl\|Hg17\|chr22 (39053347-39054691)