Non-Coding RNA Search

Ss1.1-LyN1-MLN01C050037.5

Sequence:


               
               CGCGGCTACGCGGGCGGCGGGAGACGAGGTTCAGGATTGCCGATATCTAAATCTCAACCA
TGCTGTCAAACTGCTTGCAAAATTTCTTGAAAATGGCAAACCCTCGTCTAATATATACAA
GATTGTACCAGCGAGTAATTAGTGAAAGGAAGTTTTTTGGAACTGTACCAACTGTATCCA
GATCGCGCAGGCGTGTTGTCATTACAGGCATTGGCTTAGTAACTCCTCTTGGTGTTGGAA
CTCAACTGGTATGGGATCGTCTTATCCAGGGAGAGAGTGGAATCGTTTCGCTGGTTGGTG
AAGAGTATAAGAGTATTCCTTGCAGTGTGGCTGCTTATGTGCCAAGAGGTTGTGATGAAG
GTCAATTCAATGAACAAAACTTTGTGCCCAAATCAGACATCAAGTCCATGTCTTCTCCCA
CCATTATGGCCATTGGGGCTGCAGAGTTAGCCATGAAAGACTCCTGCTGGCATCCTCAGT
CAGAAGCTGATCAAGTGGCTACAGGTGTTGCAATTGGCATGGGAATGGTTCCTCTAGAAG
TTATTTCTGAAACTGCTTTGATGTTTCAGATGAAAGGTTACAATAAAGTCAGCCCATTCT
TTGTCCCTAAGATTCTGGTCAGTATGGCAGCAGGCCAGGTCAGCATTCGATATAAACTCA
AAGGCCCCAATCATGCAGTATCCACAGCCTGTACCACAGGAGCTCATGCAGTGGGAGACT
CTTTTAGATTTATAGCCCATGGCGATGCTGATGTGATGGTGGCTGGAGGTACAGATTCTT
GCATTAGCCCCTTATCACTTGCGGGGTTTTCCAGAGCCCGGGCTCTGAGCACAAACTCTG
ATCCTGCGTTGGCATGTCGACCATTTCATCCAAAGAGAGATGGTTTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCGGCTACGCGGGCGGCGGGAGACGAGGTTCAGGATTGCCGATATCTAAATCTCAACCA
TGCTGTCAAACTGCTTGCAAAATTTCTTGAAAATGGCAAACCCTCGTCTAATATATACAA
GATTGTACCAGCGAGTAATTAGTGAAAGGAAGTTTTTTGGAACTGTACCAACTGTATCCA
GATCGCGCAGGCGTGTTGTCATTACAGGCATTGGCTTAGTAACTCCTCTTGGTGTTGGAA
CTCAACTGGTATGGGATCGTCTTATCCAGGGAGAGAGTGGAATCGTTTCGCTGGTTGGTG
AAGAGTATAAGAGTATTCCTTGCAGTGTGGCTGCTTATGTGCCAAGAGGTTGTGATGAAG
GTCAATTCAATGAACAAAACTTTGTGCCCAAATCAGACATCAAGTCCATGTCTTCTCCCA
CCATTATGGCCATTGGGGCTGCAGAGTTAGCCATGAAAGACTCCTGCTGGCATCCTCAGT
CAGAAGCTGATCAAGTGGCTACAGGTGTTGCAATTGGCATGGGAATGGTTCCTCTAGAAG
TTATTTCTGAAACTGCTTTGATGTTTCAGATGAAAGGTTACAATAAAGTCAGCCCATTCT
TTGTCCCTAAGATTCTGGTCAGTATGGCAGCAGGCCAGGTCAGCATTCGATATAAACTCA
AAGGCCCCAATCATGCAGTATCCACAGCCTGTACCACAGGAGCTCATGCAGTGGGAGACT
CTTTTAGATTTATAGCCCATGGCGATGCTGATGTGATGGTGGCTGGAGGTACAGATTCTT
GCATTAGCCCCTTATCACTTGCGGGGTTTTCCAGAGCCCGGGCTCTGAGCACAAACTCTG
ATCCTGCGTTGGCATGTCGACCATTTCATCCAAAGAGAGATGGTTTTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|7020821|dbj|BAA91286.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|7020821|dbj|BAA91286.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               771-888, + strand, RNAz p=0.925714

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               771-888, + strand, RNAz p=0.925714

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               46-888, gnl|bosTau2|chr27 (26525213-26524374)
               

               
               46-888, gnl|Hg17|chr3 (25807502-25808338)
               

               
               46-888, gnl|Mm7|chr14 (14057872-14057036)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               46-888, gnl|bosTau2|chr27 (26525213-26524374)
               

               
               46-888, gnl|Hg17|chr3 (25807502-25808338)
               

               
               46-888, gnl|Mm7|chr14 (14057872-14057036)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               clu (0.239292)
               

               
               spl (0.143184)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.239292)
               

               
               spl (0.143184)

	46-888, gnl\|bosTau2\|chr27 (26525213-26524374)
	46-888, gnl\|Hg17\|chr3 (25807502-25808338)
	46-888, gnl\|Mm7\|chr14 (14057872-14057036)