Non-Coding RNA Search

Ss1.1-LyN1-MLN01C050039.5

Sequence:


               
               ATCCAGCGTCCCCAACCCCGGGACGCAGTGGAGCCCGGCGGGCGGTCCCAGCCCCAGCCG
CGGCCGTCCCGGGGGCGCAGACGCCAAAGCCCTTCGCCCCAACCCCGGGACGCAGTGGAG
CCCGGCGGGCGGTCCCAGCCCCAGCCGCGGCCGTCCCGGGGGCGCAGACGCCAAAGCCCT
TCGGGCCAGGGCAAGGACCCAGGCCGGCCTAGCCAGCTGTGACAGCCCCATGGCCCCGGT
CGGCCACTGAGCCCCACCATGGGCAACCTATACTCAGAATACCTAAGCCCCAGCAAGGTC
CCAGAACACTATAATTATACCAAGGAGACGCCAGTCACAGAGACGCCCTCCCGCCAGGTG
GCCTCAGTCCTCATCATCATCCTCTGCTGCGCCATTGTGCTGGAGAACCTGCTGGTGCTC
ATCGCGGTTGCCCGCAACAGCAAGTTCCACTCGGCCATGTACCTGTTCCTGGGCAACCTG
GCTGCCTCAGACCTGCTGGCAGGCGTGGCCTTCATAGCCAATACCTTGCTCTCGGGCCCG
TTCACGCTGAGGCTGACCCCTGTGCAGTGGTTTGCTCGAGAGGGCTCTGCCTTCATCACG
CTCTCCGCCTCCGTCTTCAGTCTCCTGGCCATTGCTATCGAGCGGCAAGTGGCCATTGCC
AAGGTCAAGCTCTATGGCAGCGACAAGAGCTGTCGCATGCTGCTGCTCATCGCCGCCTCG
TGGCTCATCTCAATGGTTCTCGGCGGCCTGCCCATCCTTGGCTGGAACTGCCTGGGCCAC
CTAGAGGCCTGCTCCACTGTCCTGCCGCTCTACGCCAAGCCCTACGTGCTCTGTGTGGTA
ACCATCTTCTCTGTCATCTTATCAGCCATCGTAGCTCTGTACATCCGCATCTACTGCGTG
GTCCGCTCCAGCCAGGCTGATGTGGCCGGCCAGCAAACGCTGGCCCTGCTCAAGACCGTC
ACCATTGTGCTGGGCGTCTTCATCGTCTGCTGGCTGCCCGCCTTTAGCATCCTCCTCCTG
GACTACGCCTGTCCCGTCCGGGCCTGCCCCATCCTCTACAAGGCCCACTACTTCTTTGCC
TTTGCCACCCTCAACTCTCTGCTTAACCCTGTCATCTACACGTGGCGCAGTCGGGACCTG
CGGCGGGAGGTGTTACGGCCGCTGCAGTGCTGGCGGCGGGCAGCTGGGGGGCAAGGACGG
AGGGACGGGACCCCGGGCCACCGCCTCTTGCCCCTCCGCAGCTCCAGCTCCCTGGAGAGG
GGCACGCACATGCCCACATCACCCACATTTCTGGAGGGCAACACAATGGTCTGAGGGCCA
AGTGGGCTGACAGTTAGGCTACATGGAGAGTCACTGGGTGACGTGGGGCTACCAGTCAAG
GGGCCCCCACTCCACAGCCTGGGGTGATGTTGAAGATATTTCACACCTGGTATGGCCAAC
TGAGACACCAGCCAGTCGGATGGCAGAGCTGCAGCAGGGTCCCAGAGGCCAGTGCGGTGG
CCCATGTGACCTCTTCGGAACTGGATCTTGGGGAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCCAGCGTCCCCAACCCCGGGACGCAGTGGAGCCCGGCGGGCGGTCCCAGCCCCAGCCG
CGGCCGTCCCGGGGGCGCAGACGCCAAAGCCCTTCGCCCCAACCCCGGGACGCAGTGGAG
CCCGGCGGGCGGTCCCAGCCCCAGCCGCGGCCGTCCCGGGGGCGCAGACGCCAAAGCCCT
TCGGGCCAGGGCAAGGACCCAGGCCGGCCTAGCCAGCTGTGACAGCCCCATGGCCCCGGT
CGGCCACTGAGCCCCACCATGGGCAACCTATACTCAGAATACCTAAGCCCCAGCAAGGTC
CCAGAACACTATAATTATACCAAGGAGACGCCAGTCACAGAGACGCCCTCCCGCCAGGTG
GCCTCAGTCCTCATCATCATCCTCTGCTGCGCCATTGTGCTGGAGAACCTGCTGGTGCTC
ATCGCGGTTGCCCGCAACAGCAAGTTCCACTCGGCCATGTACCTGTTCCTGGGCAACCTG
GCTGCCTCAGACCTGCTGGCAGGCGTGGCCTTCATAGCCAATACCTTGCTCTCGGGCCCG
TTCACGCTGAGGCTGACCCCTGTGCAGTGGTTTGCTCGAGAGGGCTCTGCCTTCATCACG
CTCTCCGCCTCCGTCTTCAGTCTCCTGGCCATTGCTATCGAGCGGCAAGTGGCCATTGCC
AAGGTCAAGCTCTATGGCAGCGACAAGAGCTGTCGCATGCTGCTGCTCATCGCCGCCTCG
TGGCTCATCTCAATGGTTCTCGGCGGCCTGCCCATCCTTGGCTGGAACTGCCTGGGCCAC
CTAGAGGCCTGCTCCACTGTCCTGCCGCTCTACGCCAAGCCCTACGTGCTCTGTGTGGTA
ACCATCTTCTCTGTCATCTTATCAGCCATCGTAGCTCTGTACATCCGCATCTACTGCGTG
GTCCGCTCCAGCCAGGCTGATGTGGCCGGCCAGCAAACGCTGGCCCTGCTCAAGACCGTC
ACCATTGTGCTGGGCGTCTTCATCGTCTGCTGGCTGCCCGCCTTTAGCATCCTCCTCCTG
GACTACGCCTGTCCCGTCCGGGCCTGCCCCATCCTCTACAAGGCCCACTACTTCTTTGCC
TTTGCCACCCTCAACTCTCTGCTTAACCCTGTCATCTACACGTGGCGCAGTCGGGACCTG
CGGCGGGAGGTGTTACGGCCGCTGCAGTGCTGGCGGCGGGCAGCTGGGGGGCAAGGACGG
AGGGACGGGACCCCGGGCCACCGCCTCTTGCCCCTCCGCAGCTCCAGCTCCCTGGAGAGG
GGCACGCACATGCCCACATCACCCACATTTCTGGAGGGCAACACAATGGTCTGAGGGCCA
AGTGGGCTGACAGTTAGGCTACATGGAGAGTCACTGGGTGACGTGGGGCTACCAGTCAAG
GGGCCCCCACTCCACAGCCTGGGGTGATGTTGAAGATATTTCACACCTGGTATGGCCAAC
TGAGACACCAGCCAGTCGGATGGCAGAGCTGCAGCAGGGTCCCAGAGGCCAGTGCGGTGG
CCCATGTGACCTCTTCGGAACTGGATCTTGGGGAGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|10880458|gb|AAG24259.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|10880458|gb|AAG24259.1|

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               418-537, - strand, RNAz p=0.63979
               

               
               618-737, - strand, RNAz p=0.943004
               

               
               978-1097, - strand, RNAz p=0.741603
               

               
               1178-1332, + strand, RNAz p=0.689659

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               418-537, - strand, RNAz p=0.63979
               

               
               618-737, - strand, RNAz p=0.943004
               

               
               978-1097, - strand, RNAz p=0.741603
               

               
               1178-1332, + strand, RNAz p=0.689659

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_004230, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_004230, +

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               97-219, gnl|bosTau2|chr7 (9588649-9588772)
               

               
               97-219, gnl|canFam2|chr20 (53859203-53858615)
               

               
               97-219, gnl|hg17|chr19 (10202385-10202952)
               

               
               97-219, gnl|Hg17|chr19 (10202998-10202877)
               

               
               97-219, gnl|loxAfr1|scaffold_73383 (4705-5269)
               

               
               97-219, gnl|mm7|chr9 (20852616-20853228)
               

               
               97-219, gnl|Mm7|chr9 (20853277-20853153)
               

               
               97-219, gnl|monDom2|scaffold_106 (1945903-1946362)
               

               
               97-219, gnl|panTro1|chr20 (10584493-10585063)
               

               
               97-219, gnl|rheMac2|chr19 (10040252-10040821)
               

               
               97-219, gnl|rn3|chr8 (20000083-20000731)
               


               
               222-1342, gnl|bosTau2|chr7 (9593845-9594968)
               

               
               222-1342, gnl|Hg17|chr19 (10196618-10195492)
               

               
               222-1342, gnl|Mm7|chr9 (20845124-20843997)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               97-219, gnl|bosTau2|chr7 (9588649-9588772)
               

               
               97-219, gnl|canFam2|chr20 (53859203-53858615)
               

               
               97-219, gnl|hg17|chr19 (10202385-10202952)
               

               
               97-219, gnl|Hg17|chr19 (10202998-10202877)
               

               
               97-219, gnl|loxAfr1|scaffold_73383 (4705-5269)
               

               
               97-219, gnl|mm7|chr9 (20852616-20853228)
               

               
               97-219, gnl|Mm7|chr9 (20853277-20853153)
               

               
               97-219, gnl|monDom2|scaffold_106 (1945903-1946362)
               

               
               97-219, gnl|panTro1|chr20 (10584493-10585063)
               

               
               97-219, gnl|rheMac2|chr19 (10040252-10040821)
               

               
               97-219, gnl|rn3|chr8 (20000083-20000731)
               


               
               222-1342, gnl|bosTau2|chr7 (9593845-9594968)
               

               
               222-1342, gnl|Hg17|chr19 (10196618-10195492)
               

               
               222-1342, gnl|Mm7|chr9 (20845124-20843997)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               eep (0.122564)
               

               
               eru (0.120048)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)
               

               
               eru (0.120048)

	418-537, - strand, RNAz p=0.63979
	618-737, - strand, RNAz p=0.943004
	978-1097, - strand, RNAz p=0.741603
	1178-1332, + strand, RNAz p=0.689659

	97-219, gnl\|bosTau2\|chr7 (9588649-9588772)
	97-219, gnl\|canFam2\|chr20 (53859203-53858615)
	97-219, gnl\|hg17\|chr19 (10202385-10202952)
	97-219, gnl\|Hg17\|chr19 (10202998-10202877)
	97-219, gnl\|loxAfr1\|scaffold_73383 (4705-5269)
	97-219, gnl\|mm7\|chr9 (20852616-20853228)
	97-219, gnl\|Mm7\|chr9 (20853277-20853153)
	97-219, gnl\|monDom2\|scaffold_106 (1945903-1946362)
	97-219, gnl\|panTro1\|chr20 (10584493-10585063)
	97-219, gnl\|rheMac2\|chr19 (10040252-10040821)
	97-219, gnl\|rn3\|chr8 (20000083-20000731)

	222-1342, gnl\|bosTau2\|chr7 (9593845-9594968)
	222-1342, gnl\|Hg17\|chr19 (10196618-10195492)
	222-1342, gnl\|Mm7\|chr9 (20845124-20843997)