Ss1.1-LyN1-MLN01C050058.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTGCCGGAGGCTGCGCATTTTACCTAATCTCCGTGTGAGCAGCTCGGGGCAGAGTCCTTG GCGAGCTGTAACTGAACTACATGTCGTCCACGGAGCCTCCCGAGGACAGACAGAGCGGCG ACGATCCACCCGGGGACCTCCGCAGTGTCCTGGTCACCAGCGTGCTCAATCTCGAGCTCT TGGACCAGGACCTCTTCAGAGGAAGGCATTACTGGGTACCCTCAACCCAGCGGCTGTTTG GGGGTCAGATTGTAGGCCAGGCCCTGGTGGCTGCAGCCAAGTCTGTGAGCGAAGATGTTC ACGTGCACTCCCTGCACTGCTACTTTGTTCGGACAGGGGACCCGAAGGTGCCGGTGCTGT ACCAGGTGGAGCGGACGCGGACAGGGGCGAGCTTCTCTGTGCGCTCCGTGAAGGCCGTGC AGCATGGCCTGCCCATCTTTATCTGCCAGGCCTCCTTCCAGCAGGCCCAGCCCAGCCCCC TTCAGCACCAGTTCTCCATGCCCACCGTGCCCCTGCCCGAGGAGCTGCTGAGCCACGAGG CCCTCATTGAACAGTATTTAAGGGACCCTAACCTCCAAGAGAAGTACCGAGTGGGGCTGA ACCGAATTGCTGCCCAGGAGGTGCCCATTGAGATCAAGGTGGTCAACCCACCCACCCTGA GCCAGCTGCGGAGCATGGAACCAAAACAGATGTTCTGGGTGCGAGCCCGGGGGTACATTG GGGAGGGCGACATGAAGATGCACTGCTGCGTGGCTGCCTATATCTCGGACTACGCCTTCC TGGGCACAGCGCTGCTGCCCCACCAGAGGCAGCACAAGGTGCACTTCATGGTCTCCTTGG ACCACTCCATGTGGTTCCACGCCCCTTTCCGAGCGGACCACTGGATGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTGCCGGAGGCTGCGCATTTTACCTAATCTCCGTGTGAGCAGCTCGGGGCAGAGTCCTTG GCGAGCTGTAACTGAACTACATGTCGTCCACGGAGCCTCCCGAGGACAGACAGAGCGGCG ACGATCCACCCGGGGACCTCCGCAGTGTCCTGGTCACCAGCGTGCTCAATCTCGAGCTCT TGGACCAGGACCTCTTCAGAGGAAGGCATTACTGGGTACCCTCAACCCAGCGGCTGTTTG GGGGTCAGATTGTAGGCCAGGCCCTGGTGGCTGCAGCCAAGTCTGTGAGCGAAGATGTTC ACGTGCACTCCCTGCACTGCTACTTTGTTCGGACAGGGGACCCGAAGGTGCCGGTGCTGT ACCAGGTGGAGCGGACGCGGACAGGGGCGAGCTTCTCTGTGCGCTCCGTGAAGGCCGTGC AGCATGGCCTGCCCATCTTTATCTGCCAGGCCTCCTTCCAGCAGGCCCAGCCCAGCCCCC TTCAGCACCAGTTCTCCATGCCCACCGTGCCCCTGCCCGAGGAGCTGCTGAGCCACGAGG CCCTCATTGAACAGTATTTAAGGGACCCTAACCTCCAAGAGAAGTACCGAGTGGGGCTGA ACCGAATTGCTGCCCAGGAGGTGCCCATTGAGATCAAGGTGGTCAACCCACCCACCCTGA GCCAGCTGCGGAGCATGGAACCAAAACAGATGTTCTGGGTGCGAGCCCGGGGGTACATTG GGGAGGGCGACATGAAGATGCACTGCTGCGTGGCTGCCTATATCTCGGACTACGCCTTCC TGGGCACAGCGCTGCTGCCCCACCAGAGGCAGCACAAGGTGCACTTCATGGTCTCCTTGG ACCACTCCATGTGGTTCCACGCCCCTTTCCGAGCGGACCACTGGATGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 720-888, - strand, RNAz p=0.802536 | |
| 724-838, - strand, RNAz p=0.921078 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 720-888, - strand, RNAz p=0.802536 | |
| 724-838, - strand, RNAz p=0.921078 |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 4-199, gnl|bosTau2|chr13 (54460832-54460635) | |
| 4-199, gnl|Hg17|chr20 (43919437-43919234) | |
| 4-199, gnl|Mm7|chr2 (164545534-164545344) | |
| 334-563, gnl|bosTau2|chr13 (54455043-54454814) | |
| 334-563, gnl|canFam2|chr24 (36130484-36130731) | |
| 334-563, gnl|danRer3|chr11 (483848-483618) | |
| 334-563, gnl|dasNov1|scaffold_82 (61844-62091) | |
| 334-563, gnl|echTel1|scaffold_192371 (3061-3308) | |
| 334-563, gnl|fr1|chrUn (102064676-102064919) | |
| 334-563, gnl|galGal2|chr20 (10032128-10032380) | |
| 334-563, gnl|hg17|chr20 (43910492-43910739) | |
| 334-563, gnl|Hg17|chr20 (43910724-43910495) | |
| 334-563, gnl|loxAfr1|scaffold_1116 (145848-146095) | |
| 334-563, gnl|mm7|chr2 (164540370-164540617) | |
| 334-563, gnl|Mm7|chr2 (164540602-164540373) | |
| 334-563, gnl|monDom2|scaffold_35 (25184871-25185116) | |
| 334-563, gnl|oryCun1|scaffold_200647 (10387-10140) | |
| 334-563, gnl|panTro1|chr21 (46432609-46432856) | |
| 334-563, gnl|rheMac2|chr10 (18648133-18647886) | |
| 334-563, gnl|rn3|chr3 (155740805-155741052) | |
| 334-563, gnl|tetNig1|chr11 (10293291-10293523) | |
| 334-563, gnl|xenTro1|scaffold_131 (1646408-1646175) | |
| 720-888, gnl|bosTau2|chr13 (54450779-54450611) | |
| 720-888, gnl|canFam2|chr24 (36127403-36127637) | |
| 720-888, gnl|danRer3|chr11 (486225-486021) | |
| 720-888, gnl|dasNov1|scaffold_82 (59078-59312) | |
| 720-888, gnl|fr1|chrUn (102063934-102064155) | |
| 720-888, gnl|galGal2|chr20 (10031163-10031372) | |
| 720-888, gnl|hg17|chr20 (43905546-43905780) | |
| 720-888, gnl|Hg17|chr20 (43905768-43905600) | |
| 720-888, gnl|mm7|chr2 (164535615-164535846) | |
| 720-888, gnl|Mm7|chr2 (164535834-164535666) | |
| 720-888, gnl|monDom2|scaffold_35 (25182680-25182911) | |
| 720-888, gnl|oryCun1|scaffold_200647 (13585-13351) | |
| 720-888, gnl|panTro1|chr21 (46427656-46427890) | |
| 720-888, gnl|rheMac2|chr10 (18654355-18654121) | |
| 720-888, gnl|rn3|chr3 (155736213-155736449) | |
| 720-888, gnl|tetNig1|chr11 (10292734-10292951) | |
| 720-888, gnl|xenTro1|scaffold_131 (1650816-1650604) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 4-199, gnl|bosTau2|chr13 (54460832-54460635) | |
| 4-199, gnl|Hg17|chr20 (43919437-43919234) | |
| 4-199, gnl|Mm7|chr2 (164545534-164545344) | |
| 334-563, gnl|bosTau2|chr13 (54455043-54454814) | |
| 334-563, gnl|canFam2|chr24 (36130484-36130731) | |
| 334-563, gnl|danRer3|chr11 (483848-483618) | |
| 334-563, gnl|dasNov1|scaffold_82 (61844-62091) | |
| 334-563, gnl|echTel1|scaffold_192371 (3061-3308) | |
| 334-563, gnl|fr1|chrUn (102064676-102064919) | |
| 334-563, gnl|galGal2|chr20 (10032128-10032380) | |
| 334-563, gnl|hg17|chr20 (43910492-43910739) | |
| 334-563, gnl|Hg17|chr20 (43910724-43910495) | |
| 334-563, gnl|loxAfr1|scaffold_1116 (145848-146095) | |
| 334-563, gnl|mm7|chr2 (164540370-164540617) | |
| 334-563, gnl|Mm7|chr2 (164540602-164540373) | |
| 334-563, gnl|monDom2|scaffold_35 (25184871-25185116) | |
| 334-563, gnl|oryCun1|scaffold_200647 (10387-10140) | |
| 334-563, gnl|panTro1|chr21 (46432609-46432856) | |
| 334-563, gnl|rheMac2|chr10 (18648133-18647886) | |
| 334-563, gnl|rn3|chr3 (155740805-155741052) | |
| 334-563, gnl|tetNig1|chr11 (10293291-10293523) | |
| 334-563, gnl|xenTro1|scaffold_131 (1646408-1646175) | |
| 720-888, gnl|bosTau2|chr13 (54450779-54450611) | |
| 720-888, gnl|canFam2|chr24 (36127403-36127637) | |
| 720-888, gnl|danRer3|chr11 (486225-486021) | |
| 720-888, gnl|dasNov1|scaffold_82 (59078-59312) | |
| 720-888, gnl|fr1|chrUn (102063934-102064155) | |
| 720-888, gnl|galGal2|chr20 (10031163-10031372) | |
| 720-888, gnl|hg17|chr20 (43905546-43905780) | |
| 720-888, gnl|Hg17|chr20 (43905768-43905600) | |
| 720-888, gnl|mm7|chr2 (164535615-164535846) | |
| 720-888, gnl|Mm7|chr2 (164535834-164535666) | |
| 720-888, gnl|monDom2|scaffold_35 (25182680-25182911) | |
| 720-888, gnl|oryCun1|scaffold_200647 (13585-13351) | |
| 720-888, gnl|panTro1|chr21 (46427656-46427890) | |
| 720-888, gnl|rheMac2|chr10 (18654355-18654121) | |
| 720-888, gnl|rn3|chr3 (155736213-155736449) | |
| 720-888, gnl|tetNig1|chr11 (10292734-10292951) | |
| 720-888, gnl|xenTro1|scaffold_131 (1650816-1650604) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ecc (0.115035) | |
| jca (0.11396) | |
| jej (0.0989218) |