Non-Coding RNA Search

Ss1.1-LyN1-MLN01C050063.5

Sequence:


               
               TTTTTTATGCGGCTGCTTTGGTCTCCCCGCCGGCAAGAGAGCCTCAGGAAGCTGTTGAGA
AGGGGATTGGATGGGTGTGTTGATTTTAGACAATGGAGAACTCGAGCCACCTTTGTAAAG
CAATAGCGTCTTTCAGCTGCACCAGGTTGGCCCAGGTCCAGAAGGCCTGACCTGTCGTGC
GGGCATGCACGTGGTCACGTGACCCAGCCAACACCGTGCGTGCATCCCATCTGCGAGGCC
ACCGGGTCCCCTTTCAACCCTCATTAGCCAGGTAAACATTATATTGTATTAGCTCCAGCT
ACAGATTGGGAAAAAAAAAAATACCGCTATTTATAATGTAGTATTTCATAGACTTAAGTG
TATTCCTAATTTAACGGTGCAAATATTAATGTACATACTGTACAGTTCAGATTTTAAAGC
TCATATTTTTATACCCCGGAAATGTAAGATGTTTGTTACATTGCAGTGCTAGGTTTGCTA
GGGAGCCAGGAACAGCATTTATGGATGAAATGATTGCTTGTATTTTAGTCAGGGTTTATA
AGTTTAGATGGTCAGATTTATATTGCCTAGTGATGGGAAGTTCAACTTTTTTGATTTTTT
TTCAATATTAAAAAGGCTCTGTATGCATGGTGGGGCTATGTAAATACTCTTTAAAACTAT
GGCCCTAGTAATCTTACAAGTGTTATTTATGGGTCAAGCAATGTAAACTGTATAAATGTA
AAAATAAACAAAAAATCCCCACACATAACCCCGGGAATATATGGTAAAAAACAAGTAGAA
GCTGTTCGGGTGAGTATTTTTTTCCCCTTGGGGATGGCAGAGGGTGTCTTTCCCATTTTC
AGCAAGCTGGTGATTAATCTCATGGGAAGAGACCAAAAAACTACAAGGACCTGCTTTCTG
TGGCAGAGGATTTTGTAGATTTATTCCTTTTCATCCCTCCTTTCCAGCTACTTTGTTGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTATGCGGCTGCTTTGGTCTCCCCGCCGGCAAGAGAGCCTCAGGAAGCTGTTGAGA
AGGGGATTGGATGGGTGTGTTGATTTTAGACAATGGAGAACTCGAGCCACCTTTGTAAAG
CAATAGCGTCTTTCAGCTGCACCAGGTTGGCCCAGGTCCAGAAGGCCTGACCTGTCGTGC
GGGCATGCACGTGGTCACGTGACCCAGCCAACACCGTGCGTGCATCCCATCTGCGAGGCC
ACCGGGTCCCCTTTCAACCCTCATTAGCCAGGTAAACATTATATTGTATTAGCTCCAGCT
ACAGATTGGGAAAAAAAAAAATACCGCTATTTATAATGTAGTATTTCATAGACTTAAGTG
TATTCCTAATTTAACGGTGCAAATATTAATGTACATACTGTACAGTTCAGATTTTAAAGC
TCATATTTTTATACCCCGGAAATGTAAGATGTTTGTTACATTGCAGTGCTAGGTTTGCTA
GGGAGCCAGGAACAGCATTTATGGATGAAATGATTGCTTGTATTTTAGTCAGGGTTTATA
AGTTTAGATGGTCAGATTTATATTGCCTAGTGATGGGAAGTTCAACTTTTTTGATTTTTT
TTCAATATTAAAAAGGCTCTGTATGCATGGTGGGGCTATGTAAATACTCTTTAAAACTAT
GGCCCTAGTAATCTTACAAGTGTTATTTATGGGTCAAGCAATGTAAACTGTATAAATGTA
AAAATAAACAAAAAATCCCCACACATAACCCCGGGAATATATGGTAAAAAACAAGTAGAA
GCTGTTCGGGTGAGTATTTTTTTCCCCTTGGGGATGGCAGAGGGTGTCTTTCCCATTTTC
AGCAAGCTGGTGATTAATCTCATGGGAAGAGACCAAAAAACTACAAGGACCTGCTTTCTG
TGGCAGAGGATTTTGTAGATTTATTCCTTTTCATCCCTCCTTTCCAGCTACTTTGTTGGC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               3-960, gnl|bosTau2|chr5 (26965044-26965998)
               

               
               3-960, gnl|Hg17|chr12 (41139631-41138684)
               

               
               3-960, gnl|Mm7|chr15 (93580609-93579730)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-960, gnl|bosTau2|chr5 (26965044-26965998)
               

               
               3-960, gnl|Hg17|chr12 (41139631-41138684)
               

               
               3-960, gnl|Mm7|chr15 (93580609-93579730)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               fcc (0.593354)
               

               
               eru (0.360144)
               

               
               eye (0.170503)
               

               
               mga (0.160205)
               

               
               hyp (0.142837)
               

               
               bla (0.124347)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.593354)
               

               
               eru (0.360144)
               

               
               eye (0.170503)
               

               
               mga (0.160205)
               

               
               hyp (0.142837)
               

               
               bla (0.124347)

	3-960, gnl\|bosTau2\|chr5 (26965044-26965998)
	3-960, gnl\|Hg17\|chr12 (41139631-41138684)
	3-960, gnl\|Mm7\|chr15 (93580609-93579730)

	fcc (0.593354)
	eru (0.360144)
	eye (0.170503)
	mga (0.160205)
	hyp (0.142837)
	bla (0.124347)