Non-Coding RNA Search

Ss1.1-LyN1-MLN01C050066.5

Sequence:


               
               CGGAGTGATCGGGCGACTAAGGCCGGGTGCGCGTGCGCAGCGAACAGCTGTCACCCAGTG
CGGAACAAGTCTCCTAAATTTCCCAAATCTCCCTGGGTCACGGGCTACCGTTTTCCTTCT
CATCTTCCTCCTCGGGGTCGTGTCCTCGCCCCAGTCCGCGCGCCAGAGACTGCCCCAGCC
ATTATGGAGGTGGCCGAGGTGGAGAGTCCGCTTAACCCCAGCTGTAAGATCATGACCTTC
AGACCCTCCATGGAGGAATTCCGAGAGTTCAACAAATACCTTGCATACATGGAGTCTAAA
GGAGCCCATCGAGCGGGTCTTGCAAAGGTGATTCCTCCTAAGGAGTGGAAGCCAAGGCAG
TGCTATGATGACATTGACAATTTGCTTATTCCAGCACCGATTCAGCAGATGGTCACAGGA
CAGTCAGGACTGTTTACTCAGTACAACATCCAGAAAAAAGCCATGACAGTGAAGGAGTTC
AGGCAGCTGGCCAACAGTGGCAAATATTGTACTCCAAGATACTTGGATTATGAAGATTTG
GAGCGCAAGTACTGGAAGAACTTAACCTTTGTGGCACCCATCTATGGTGCAGACATTAAT
GGGAGCATATACGATGAGGGTGTGGATGAATGGAACATAGCTCGCCTAAACACGGTCTTG
GATGTGGTTGAGGAAGAATGTGGTATTTCTATTGAGGGTGTAAATACCCCCTATCTCTAT
TTTGGCCTGTGGAAAACCACGTTTGCATGGCACACTGAGGATATGGACCTCTACAGCATT
AATTATCTCCACTTTGGAGAGCCCAAGTCTTGGTATGCAATACCCCCAGAACACGGAAAA
CGACTGGAAAGATTAGCTCAAGGTTTTTTCCCAAGCAGTTCTCAAGGGTGTGATGCATTT
CTTCGCCACAAGATGACACTGATCTCTCCCTCAGTACTGAAGAAATACGGTATTCCCTTT
GACAAGATCACACAGGAAGCTGGAGAATTTATGATCACTTTCCCATATGGCTACCATGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGAGTGATCGGGCGACTAAGGCCGGGTGCGCGTGCGCAGCGAACAGCTGTCACCCAGTG
CGGAACAAGTCTCCTAAATTTCCCAAATCTCCCTGGGTCACGGGCTACCGTTTTCCTTCT
CATCTTCCTCCTCGGGGTCGTGTCCTCGCCCCAGTCCGCGCGCCAGAGACTGCCCCAGCC
ATTATGGAGGTGGCCGAGGTGGAGAGTCCGCTTAACCCCAGCTGTAAGATCATGACCTTC
AGACCCTCCATGGAGGAATTCCGAGAGTTCAACAAATACCTTGCATACATGGAGTCTAAA
GGAGCCCATCGAGCGGGTCTTGCAAAGGTGATTCCTCCTAAGGAGTGGAAGCCAAGGCAG
TGCTATGATGACATTGACAATTTGCTTATTCCAGCACCGATTCAGCAGATGGTCACAGGA
CAGTCAGGACTGTTTACTCAGTACAACATCCAGAAAAAAGCCATGACAGTGAAGGAGTTC
AGGCAGCTGGCCAACAGTGGCAAATATTGTACTCCAAGATACTTGGATTATGAAGATTTG
GAGCGCAAGTACTGGAAGAACTTAACCTTTGTGGCACCCATCTATGGTGCAGACATTAAT
GGGAGCATATACGATGAGGGTGTGGATGAATGGAACATAGCTCGCCTAAACACGGTCTTG
GATGTGGTTGAGGAAGAATGTGGTATTTCTATTGAGGGTGTAAATACCCCCTATCTCTAT
TTTGGCCTGTGGAAAACCACGTTTGCATGGCACACTGAGGATATGGACCTCTACAGCATT
AATTATCTCCACTTTGGAGAGCCCAAGTCTTGGTATGCAATACCCCCAGAACACGGAAAA
CGACTGGAAAGATTAGCTCAAGGTTTTTTCCCAAGCAGTTCTCAAGGGTGTGATGCATTT
CTTCGCCACAAGATGACACTGATCTCTCCCTCAGTACTGAAGAAATACGGTATTCCCTTT
GACAAGATCACACAGGAAGCTGGAGAATTTATGATCACTTTCCCATATGGCTACCATGCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q5ZMG6_CHICK

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5ZMG6_CHICK

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-166, gnl|bosTau2|chr8 (18892681-18892516)
               

               
               1-166, gnl|canFam2|chr11 (30712192-30712780)
               

               
               1-166, gnl|dasNov1|scaffold_10202 (79857-79331)
               

               
               1-166, gnl|echTel1|scaffold_234052 (468-9)
               

               
               1-166, gnl|hg17|chr9 (6747959-6748474)
               

               
               1-166, gnl|Hg17|chr9 (6748042-6748203)
               

               
               1-166, gnl|mm7|chr4 (73655567-73655988)
               

               
               1-166, gnl|Mm7|chr4 (73655654-73655810)
               

               
               1-166, gnl|oryCun1|scaffold_118403 (9129-8579)
               

               
               1-166, gnl|panTro1|chr11_random (37049884-37049366)
               

               
               1-166, gnl|rheMac2|chr15 (70388572-70388054)
               

               
               1-166, gnl|rn3|chr5 (92087167-92087585)
               


               
               214-1016, gnl|bosTau2|chr15 (174066-173264)
               

               
               214-1016, gnl|Hg17|chr11 (94398397-94399199)
               

               
               214-1016, gnl|Mm7|chr9 (14286362-14285561)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-166, gnl|bosTau2|chr8 (18892681-18892516)
               

               
               1-166, gnl|canFam2|chr11 (30712192-30712780)
               

               
               1-166, gnl|dasNov1|scaffold_10202 (79857-79331)
               

               
               1-166, gnl|echTel1|scaffold_234052 (468-9)
               

               
               1-166, gnl|hg17|chr9 (6747959-6748474)
               

               
               1-166, gnl|Hg17|chr9 (6748042-6748203)
               

               
               1-166, gnl|mm7|chr4 (73655567-73655988)
               

               
               1-166, gnl|Mm7|chr4 (73655654-73655810)
               

               
               1-166, gnl|oryCun1|scaffold_118403 (9129-8579)
               

               
               1-166, gnl|panTro1|chr11_random (37049884-37049366)
               

               
               1-166, gnl|rheMac2|chr15 (70388572-70388054)
               

               
               1-166, gnl|rn3|chr5 (92087167-92087585)
               


               
               214-1016, gnl|bosTau2|chr15 (174066-173264)
               

               
               214-1016, gnl|Hg17|chr11 (94398397-94399199)
               

               
               214-1016, gnl|Mm7|chr9 (14286362-14285561)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               tes (0.415628)
               

               
               med (0.116252)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.415628)
               

               
               med (0.116252)

	1-166, gnl\|bosTau2\|chr8 (18892681-18892516)
	1-166, gnl\|canFam2\|chr11 (30712192-30712780)
	1-166, gnl\|dasNov1\|scaffold_10202 (79857-79331)
	1-166, gnl\|echTel1\|scaffold_234052 (468-9)
	1-166, gnl\|hg17\|chr9 (6747959-6748474)
	1-166, gnl\|Hg17\|chr9 (6748042-6748203)
	1-166, gnl\|mm7\|chr4 (73655567-73655988)
	1-166, gnl\|Mm7\|chr4 (73655654-73655810)
	1-166, gnl\|oryCun1\|scaffold_118403 (9129-8579)
	1-166, gnl\|panTro1\|chr11_random (37049884-37049366)
	1-166, gnl\|rheMac2\|chr15 (70388572-70388054)
	1-166, gnl\|rn3\|chr5 (92087167-92087585)

	214-1016, gnl\|bosTau2\|chr15 (174066-173264)
	214-1016, gnl\|Hg17\|chr11 (94398397-94399199)
	214-1016, gnl\|Mm7\|chr9 (14286362-14285561)