Ss1.1-LyN1-MLN01C060005.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGTTGGGGCTTCCAGGCTCCGCAGGCTGTTGGTGCGGCTGCGCCTTCTACGCAGCCCGG CAGGTTTGGTGGGCTCCCGGGCGACTGCCGTTGAGTGTGCAGCAGTGGCAGCGGCGGGAG CCGAGGGTGCCTGGAAGGAGACCTCGAGTGGACGCTTGGCAGGGTCCGAGATTTGAGAAG CGCGGTGTAGCCATGGCCCCGATCAAGGTGGGAGATGCCATCCCATCGGTGGTGGTGTTT GAAGGGGAGCCTGAGAAAAAGGTGAACCTGGCAGAGCTGTTCAAGGGCAAGAAGGGGGTG CTGTTTGGAGTCCCTGGGGCCTTTACTCCTGGCTGTTCCAAGACCCACCTTCCAGGGTTT GTGGAGCAGGCCGAAGCACTGAAGGCCAAGGGGATCCAAGTGGTGGCATGTCTGAGTGTT AATGACGTCTTTGTCACTGAAATGTGGGGACGAGCCCACAACACGGAAGGCAAGGTTCGG CTCCTGGCTGACCCCACTGGGGCCTTTGGGAAGGAGACAGATTTATTACTAGATGATTCC TTGGTGTCTCTCTTTGGGAATCGACGGCTCAAGAGGTTCTCCATGGTGATCGAGGATGGC ATAGTGAAGTCCCTGAATGTGGAGCCAGATGGCACAGGCCTCACCTGCAGCCTGGCCCCC AACATCATCTCACAGCTCTGAGGCCTTGAGCCCAGATATATTTCTTCTCCCCTTTTCACG TGCCCAGCTGTGGGGAGCGGGCCCCGGGCTCACCTCAGTCGGAACCTTGGCCAGATTTCT GCAATAAACTCTTCTGGTTCGTGTCTGTCAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGTTGGGGCTTCCAGGCTCCGCAGGCTGTTGGTGCGGCTGCGCCTTCTACGCAGCCCGG CAGGTTTGGTGGGCTCCCGGGCGACTGCCGTTGAGTGTGCAGCAGTGGCAGCGGCGGGAG CCGAGGGTGCCTGGAAGGAGACCTCGAGTGGACGCTTGGCAGGGTCCGAGATTTGAGAAG CGCGGTGTAGCCATGGCCCCGATCAAGGTGGGAGATGCCATCCCATCGGTGGTGGTGTTT GAAGGGGAGCCTGAGAAAAAGGTGAACCTGGCAGAGCTGTTCAAGGGCAAGAAGGGGGTG CTGTTTGGAGTCCCTGGGGCCTTTACTCCTGGCTGTTCCAAGACCCACCTTCCAGGGTTT GTGGAGCAGGCCGAAGCACTGAAGGCCAAGGGGATCCAAGTGGTGGCATGTCTGAGTGTT AATGACGTCTTTGTCACTGAAATGTGGGGACGAGCCCACAACACGGAAGGCAAGGTTCGG CTCCTGGCTGACCCCACTGGGGCCTTTGGGAAGGAGACAGATTTATTACTAGATGATTCC TTGGTGTCTCTCTTTGGGAATCGACGGCTCAAGAGGTTCTCCATGGTGATCGAGGATGGC ATAGTGAAGTCCCTGAATGTGGAGCCAGATGGCACAGGCCTCACCTGCAGCCTGGCCCCC AACATCATCTCACAGCTCTGAGGCCTTGAGCCCAGATATATTTCTTCTCCCCTTTTCACG TGCCCAGCTGTGGGGAGCGGGCCCCGGGCTCACCTCAGTCGGAACCTTGGCCAGATTTCT GCAATAAACTCTTCTGGTTCGTGTCTGTCAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 63 entry(ies) | More info |
| Aligned organism(s): 63 entry(ies) | Help | Less info |
| 3-210, gnl|bosTau2|chr29 (33426476-33426685) | |
| 3-210, gnl|Hg17|chr11 (63842244-63842437) | |
| 338-476, gnl|bosTau2|chr29 (33428747-33428885) | |
| 338-476, gnl|canFam2|chr18 (55778027-55777876) | |
| 338-476, gnl|canFam2|chr2 (43364820-43364686) | |
| 338-476, gnl|canFam2|chr4 (28718972-28719148) | |
| 338-476, gnl|danRer3|chrUn (73960980-73960835) | |
| 338-476, gnl|dasNov1|scaffold_149813 (4512-4382) | |
| 338-476, gnl|dasNov1|scaffold_149813 (4371-4523) | |
| 338-476, gnl|dasNov1|scaffold_64219 (7699-7885) | |
| 338-476, gnl|echTel1|scaffold_102421 (1284-1435) | |
| 338-476, gnl|echTel1|scaffold_303207 (4124-3994) | |
| 338-476, gnl|echTel1|scaffold_303207 (4167-3968) | |
| 338-476, gnl|fr1|chrUn (5723692-5723902) | |
| 338-476, gnl|fr1|chrUn (5723833-5723688) | |
| 338-476, gnl|hg17|chr10 (76718256-76718470) | |
| 338-476, gnl|hg17|chr11 (63844702-63844854) | |
| 338-476, gnl|Hg17|chr11 (63844704-63844842) | |
| 338-476, gnl|hg17|chr3 (73780297-73780428) | |
| 338-476, gnl|loxAfr1|scaffold_4537 (61858-61729) | |
| 338-476, gnl|loxAfr1|scaffold_4537 (61719-61854) | |
| 338-476, gnl|loxAfr1|scaffold_89921 (7023-6818) | |
| 338-476, gnl|mm7|chr14 (19555071-19555303) | |
| 338-476, gnl|mm7|chr19 (6727405-6727535) | |
| 338-476, gnl|mm7|chr19 (6727544-6727394) | |
| 338-476, gnl|Mm7|chr19 (6727542-6727404) | |
| 338-476, gnl|monDom2|scaffold_1504 (11407-11254) | |
| 338-476, gnl|oryCun1|scaffold_198951 (92483-92610) | |
| 338-476, gnl|oryCun1|scaffold_198951 (92440-92619) | |
| 338-476, gnl|panTro1|chr2 (75809726-75809856) | |
| 338-476, gnl|panTro1|chr8 (77979975-77980189) | |
| 338-476, gnl|panTro1|chr9 (64833734-64833886) | |
| 338-476, gnl|rheMac2|chr2 (62560819-62560684) | |
| 338-476, gnl|rheMac2|chr2 (62560683-62560815) | |
| 338-476, gnl|rheMac2|chr9 (61710332-61710118) | |
| 338-476, gnl|rn3|chr1 (209742661-209742791) | |
| 338-476, gnl|rn3|chr1 (209742800-209742650) | |
| 338-476, gnl|rn3|chr15 (2466579-2466472) | |
| 338-476, gnl|tetNig1|chrUn_random (165748431-165748225) | |
| 338-476, gnl|tetNig1|chrUn_random (165748288-165748435) | |
| 338-476, gnl|xenTro1|scaffold_4492 (2969-2839) | |
| 574-809, gnl|bosTau2|chr29 (33429289-33429539) | |
| 574-809, gnl|canFam2|chr2 (43364912-43365171) | |
| 574-809, gnl|canFam2|chr34 (33473390-33473659) | |
| 574-809, gnl|dasNov1|scaffold_149813 (4921-5179) | |
| 574-809, gnl|dasNov1|scaffold_149813 (4931-5185) | |
| 574-809, gnl|echTel1|scaffold_269764 (2507-2774) | |
| 574-809, gnl|echTel1|scaffold_269764 (2507-2774) | |
| 574-809, gnl|Hg17|chr11 (63845632-63845861) | |
| 574-809, gnl|hg17|chr2 (178795870-178796098) | |
| 574-809, gnl|hg17|chr3 (73780678-73780933) | |
| 574-809, gnl|loxAfr1|scaffold_4537 (61944-62151) | |
| 574-809, gnl|loxAfr1|scaffold_89921 (7058-7320) | |
| 574-809, gnl|mm7|chr19 (6726823-6726586) | |
| 574-809, gnl|mm7|chr19 (6726825-6726575) | |
| 574-809, gnl|Mm7|chr19 (6726817-6726570) | |
| 574-809, gnl|oryCun1|scaffold_198951 (92420-92179) | |
| 574-809, gnl|panTro1|chr13 (68578863-68579090) | |
| 574-809, gnl|panTro1|chr2 (75810106-75810361) | |
| 574-809, gnl|rheMac2|chr12 (41742851-41743072) | |
| 574-809, gnl|rheMac2|chr2 (62560424-62560169) | |
| 574-809, gnl|rn3|chr1 (209742087-209741854) | |
| 574-809, gnl|rn3|chr1 (209742094-209741843) |
| Aligned organism(s): 63 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-210, gnl|bosTau2|chr29 (33426476-33426685) | |
| 3-210, gnl|Hg17|chr11 (63842244-63842437) | |
| 338-476, gnl|bosTau2|chr29 (33428747-33428885) | |
| 338-476, gnl|canFam2|chr18 (55778027-55777876) | |
| 338-476, gnl|canFam2|chr2 (43364820-43364686) | |
| 338-476, gnl|canFam2|chr4 (28718972-28719148) | |
| 338-476, gnl|danRer3|chrUn (73960980-73960835) | |
| 338-476, gnl|dasNov1|scaffold_149813 (4512-4382) | |
| 338-476, gnl|dasNov1|scaffold_149813 (4371-4523) | |
| 338-476, gnl|dasNov1|scaffold_64219 (7699-7885) | |
| 338-476, gnl|echTel1|scaffold_102421 (1284-1435) | |
| 338-476, gnl|echTel1|scaffold_303207 (4124-3994) | |
| 338-476, gnl|echTel1|scaffold_303207 (4167-3968) | |
| 338-476, gnl|fr1|chrUn (5723692-5723902) | |
| 338-476, gnl|fr1|chrUn (5723833-5723688) | |
| 338-476, gnl|hg17|chr10 (76718256-76718470) | |
| 338-476, gnl|hg17|chr11 (63844702-63844854) | |
| 338-476, gnl|Hg17|chr11 (63844704-63844842) | |
| 338-476, gnl|hg17|chr3 (73780297-73780428) | |
| 338-476, gnl|loxAfr1|scaffold_4537 (61858-61729) | |
| 338-476, gnl|loxAfr1|scaffold_4537 (61719-61854) | |
| 338-476, gnl|loxAfr1|scaffold_89921 (7023-6818) | |
| 338-476, gnl|mm7|chr14 (19555071-19555303) | |
| 338-476, gnl|mm7|chr19 (6727405-6727535) | |
| 338-476, gnl|mm7|chr19 (6727544-6727394) | |
| 338-476, gnl|Mm7|chr19 (6727542-6727404) | |
| 338-476, gnl|monDom2|scaffold_1504 (11407-11254) | |
| 338-476, gnl|oryCun1|scaffold_198951 (92483-92610) | |
| 338-476, gnl|oryCun1|scaffold_198951 (92440-92619) | |
| 338-476, gnl|panTro1|chr2 (75809726-75809856) | |
| 338-476, gnl|panTro1|chr8 (77979975-77980189) | |
| 338-476, gnl|panTro1|chr9 (64833734-64833886) | |
| 338-476, gnl|rheMac2|chr2 (62560819-62560684) | |
| 338-476, gnl|rheMac2|chr2 (62560683-62560815) | |
| 338-476, gnl|rheMac2|chr9 (61710332-61710118) | |
| 338-476, gnl|rn3|chr1 (209742661-209742791) | |
| 338-476, gnl|rn3|chr1 (209742800-209742650) | |
| 338-476, gnl|rn3|chr15 (2466579-2466472) | |
| 338-476, gnl|tetNig1|chrUn_random (165748431-165748225) | |
| 338-476, gnl|tetNig1|chrUn_random (165748288-165748435) | |
| 338-476, gnl|xenTro1|scaffold_4492 (2969-2839) | |
| 574-809, gnl|bosTau2|chr29 (33429289-33429539) | |
| 574-809, gnl|canFam2|chr2 (43364912-43365171) | |
| 574-809, gnl|canFam2|chr34 (33473390-33473659) | |
| 574-809, gnl|dasNov1|scaffold_149813 (4921-5179) | |
| 574-809, gnl|dasNov1|scaffold_149813 (4931-5185) | |
| 574-809, gnl|echTel1|scaffold_269764 (2507-2774) | |
| 574-809, gnl|echTel1|scaffold_269764 (2507-2774) | |
| 574-809, gnl|Hg17|chr11 (63845632-63845861) | |
| 574-809, gnl|hg17|chr2 (178795870-178796098) | |
| 574-809, gnl|hg17|chr3 (73780678-73780933) | |
| 574-809, gnl|loxAfr1|scaffold_4537 (61944-62151) | |
| 574-809, gnl|loxAfr1|scaffold_89921 (7058-7320) | |
| 574-809, gnl|mm7|chr19 (6726823-6726586) | |
| 574-809, gnl|mm7|chr19 (6726825-6726575) | |
| 574-809, gnl|Mm7|chr19 (6726817-6726570) | |
| 574-809, gnl|oryCun1|scaffold_198951 (92420-92179) | |
| 574-809, gnl|panTro1|chr13 (68578863-68579090) | |
| 574-809, gnl|panTro1|chr2 (75810106-75810361) | |
| 574-809, gnl|rheMac2|chr12 (41742851-41743072) | |
| 574-809, gnl|rheMac2|chr2 (62560424-62560169) | |
| 574-809, gnl|rn3|chr1 (209742087-209741854) | |
| 574-809, gnl|rn3|chr1 (209742094-209741843) |
| Expressed library(ies): 35 entry(ies) | More info |
| Expressed library(ies): 35 entry(ies) | Help | Less info |
| pty (1.14172) | |
| col (0.585023) | |
| hyp (0.571347) | |
| fce (0.543183) | |
| duo (0.518403) | |
| eje (0.494169) | |
| cli (0.458435) | |
| ute (0.398353) | |
| clu (0.358938) | |
| ebs (0.354904) | |
| fty (0.351679) | |
| fhi (0.339155) | |
| cga (0.279096) | |
| ese (0.253004) | |
| eep (0.245128) | |
| pgl (0.236967) | |
| med (0.232504) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| cmu (0.186393) | |
| nep (0.183925) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| cki (0.165235) | |
| nco (0.161734) | |
| eli (0.151814) | |
| cag (0.151194) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| ssp (0.13552) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| cly (0.120642) | |
| nbm (0.0993246) |
| Expressed library(ies): 35 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pty (1.14172) | |
| col (0.585023) | |
| hyp (0.571347) | |
| fce (0.543183) | |
| duo (0.518403) | |
| eje (0.494169) | |
| cli (0.458435) | |
| ute (0.398353) | |
| clu (0.358938) | |
| ebs (0.354904) | |
| fty (0.351679) | |
| fhi (0.339155) | |
| cga (0.279096) | |
| ese (0.253004) | |
| eep (0.245128) | |
| pgl (0.236967) | |
| med (0.232504) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| cmu (0.186393) | |
| nep (0.183925) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| cki (0.165235) | |
| nco (0.161734) | |
| eli (0.151814) | |
| cag (0.151194) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| ssp (0.13552) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| cly (0.120642) | |
| nbm (0.0993246) |