Non-Coding RNA Search

Ss1.1-LyN1-MLN01C060023.5

Sequence:


               
               GGGAGGGCTCCGCGCAACCCACTCTTCCGCCTGCGGCGAGACCATGTTCGTTCCCTGCGG
GGACTCGGTCCCCGACCTCGCGGGATGCACGCTCCTGATGCCCGCAGTGTCTGTTGGAAA
TGTTGGTCAGCTTGCAATAGATCTAATTATTTCTACACTGAATATGTGTAAGATCGGTTA
CTTCTATACTGATTGTCTTGTGCCAATGGTTGGAAACAATCCATATGCAACTGCAGAAGA
AAATTCAACAGAACTCAGTATAAATGCTGAAGTGTATGCATCACCTTCAAAGAAACTAGT
GGCTCTTCAGTTAAGATCCATTTTTATTAAGTATAAATCAAAGTCATTCTGCGAGAAACT
GCTCTCCTGGGTGAAAAGCAGTGACCTTGCCAAAGTCGTCGTTCTTTCGAGCAGTCACTC
CTATCAGCGCAATGACCTCCAGCTCCGCAGTACTCCTTTCAGGTATCTGCTTACACCCTC
CATACCAAAAAGTGTTCAAAATAAAATACAGAGCCTTAATTGGGAAGAAATGGAAAAAAG
TCCATGCATCCCTGAAATAGATGATTCTGAGTTTTGTGTCCGTGTTCCTGGAGGAGGTAT
CACAAAAACGCTCTATGACGAAGGCTGTTCTAAAGGAATCCCCATGGCAGTTCTGCTGAA
ATTCGTTTCAGAAGGAGACAATATCCCAGATGCGTTAGGTCTCGTTGAGTATCTTAATGA
GTGGCTTCAGATAATCAAACCATGTTGTGAGGACACCACAGAGTCGGCCTTGCCGTGGAA
AATGCCCAGTTCTTGGAGACTGCTCTTTGGTAGTGGCCTTCCCCCTGCACTTTTTTGATC
TGTTTTTAGTTTTATACCTCATGTCCCAAGACACTTACTACCAATATAACTGTTAAACAG
CTATATAAAAAGTTGTATTGCCTGAGGATATATCAGGAAATCTTTACTTTCCAGAGGGAA
TCTCAAAGAGAAGAAGATTAATGAAAGATGGTTTCTGCCATGATTTTCATCATATACAAC
AAATGTAAATTTTGTGCAATAGAGTATTTCCTAAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAGGGCTCCGCGCAACCCACTCTTCCGCCTGCGGCGAGACCATGTTCGTTCCCTGCGG
GGACTCGGTCCCCGACCTCGCGGGATGCACGCTCCTGATGCCCGCAGTGTCTGTTGGAAA
TGTTGGTCAGCTTGCAATAGATCTAATTATTTCTACACTGAATATGTGTAAGATCGGTTA
CTTCTATACTGATTGTCTTGTGCCAATGGTTGGAAACAATCCATATGCAACTGCAGAAGA
AAATTCAACAGAACTCAGTATAAATGCTGAAGTGTATGCATCACCTTCAAAGAAACTAGT
GGCTCTTCAGTTAAGATCCATTTTTATTAAGTATAAATCAAAGTCATTCTGCGAGAAACT
GCTCTCCTGGGTGAAAAGCAGTGACCTTGCCAAAGTCGTCGTTCTTTCGAGCAGTCACTC
CTATCAGCGCAATGACCTCCAGCTCCGCAGTACTCCTTTCAGGTATCTGCTTACACCCTC
CATACCAAAAAGTGTTCAAAATAAAATACAGAGCCTTAATTGGGAAGAAATGGAAAAAAG
TCCATGCATCCCTGAAATAGATGATTCTGAGTTTTGTGTCCGTGTTCCTGGAGGAGGTAT
CACAAAAACGCTCTATGACGAAGGCTGTTCTAAAGGAATCCCCATGGCAGTTCTGCTGAA
ATTCGTTTCAGAAGGAGACAATATCCCAGATGCGTTAGGTCTCGTTGAGTATCTTAATGA
GTGGCTTCAGATAATCAAACCATGTTGTGAGGACACCACAGAGTCGGCCTTGCCGTGGAA
AATGCCCAGTTCTTGGAGACTGCTCTTTGGTAGTGGCCTTCCCCCTGCACTTTTTTGATC
TGTTTTTAGTTTTATACCTCATGTCCCAAGACACTTACTACCAATATAACTGTTAAACAG
CTATATAAAAAGTTGTATTGCCTGAGGATATATCAGGAAATCTTTACTTTCCAGAGGGAA
TCTCAAAGAGAAGAAGATTAATGAAAGATGGTTTCTGCCATGATTTTCATCATATACAAC
AAATGTAAATTTTGTGCAATAGAGTATTTCCTAAGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57089809|ref|XP_537340.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57089809|ref|XP_537340.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               139-288, + strand, RNAz p=0.919468

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               139-288, + strand, RNAz p=0.919468

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC013356, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC013356, +

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               100-288, gnl|bosTau2|chr24 (31106090-31106278)
               

               
               100-288, gnl|Hg17|chr18 (12696548-12696748)
               

               
               100-288, gnl|Mm7|chr18 (68036603-68036781)
               


               
               448-627, gnl|bosTau2|chr24 (31110771-31110950)
               

               
               448-627, gnl|Hg17|chr18 (12710507-12710685)
               

               
               448-627, gnl|Mm7|chr18 (68041065-68041244)
               


               
               746-919, gnl|bosTau2|chr24 (31113213-31113386)
               

               
               746-919, gnl|Hg17|chr18 (12715438-12715622)
               

               
               746-919, gnl|Mm7|chr18 (68046181-68046366)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               100-288, gnl|bosTau2|chr24 (31106090-31106278)
               

               
               100-288, gnl|Hg17|chr18 (12696548-12696748)
               

               
               100-288, gnl|Mm7|chr18 (68036603-68036781)
               


               
               448-627, gnl|bosTau2|chr24 (31110771-31110950)
               

               
               448-627, gnl|Hg17|chr18 (12710507-12710685)
               

               
               448-627, gnl|Mm7|chr18 (68041065-68041244)
               


               
               746-919, gnl|bosTau2|chr24 (31113213-31113386)
               

               
               746-919, gnl|Hg17|chr18 (12715438-12715622)
               

               
               746-919, gnl|Mm7|chr18 (68046181-68046366)

Expressed library(ies): 18 entry(ies)

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Expressed library(ies): 18 entry(ies)

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               pla (0.401016)
               

               
               sin (0.349895)
               

               
               vin (0.332557)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               col (0.195008)
               

               
               sag (0.182715)
               

               
               eye (0.170503)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.401016)
               

               
               sin (0.349895)
               

               
               vin (0.332557)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               col (0.195008)
               

               
               sag (0.182715)
               

               
               eye (0.170503)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

	100-288, gnl\|bosTau2\|chr24 (31106090-31106278)
	100-288, gnl\|Hg17\|chr18 (12696548-12696748)
	100-288, gnl\|Mm7\|chr18 (68036603-68036781)

	448-627, gnl\|bosTau2\|chr24 (31110771-31110950)
	448-627, gnl\|Hg17\|chr18 (12710507-12710685)
	448-627, gnl\|Mm7\|chr18 (68041065-68041244)

	746-919, gnl\|bosTau2\|chr24 (31113213-31113386)
	746-919, gnl\|Hg17\|chr18 (12715438-12715622)
	746-919, gnl\|Mm7\|chr18 (68046181-68046366)

	pla (0.401016)
	sin (0.349895)
	vin (0.332557)
	ece (0.229305)
	mas (0.210305)
	hea (0.204499)
	col (0.195008)
	sag (0.182715)
	eye (0.170503)
	fat (0.147427)
	lin (0.145603)
	spl (0.143184)
	sug (0.127291)
	bla (0.124347)
	tra (0.123092)
	ebs (0.118301)
	cty (0.10408)
	eje (0.0988338)