Ss1.1-LyN1-MLN01C060030.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGGACTTCCGCCGGAAACGGGGTGGCCTGGAACCTCTCCTAGTGGAGATTCCGCTGTTT TTTTTTCCTCTTCTGGTCGTGTCTTGGCACTGTCTGGGCCTGAGTGAAGATGGCTTGCGC CGCCGCACGGTCCCCGGCCGACCAGGACAGGTTCATTTGTATCTATCCTGCATATTTAAA TAACAAGAAGACCATTGCGGAGGGGAGGCGAATTCCCATAAGTAAGGCTGTTGAAAATCC TACAGCTACAGAGATTCAAGATGTATGCTCAGCAGTTGGACTTAATGTCTTTCTTGAGAA AAATAAGATGTACTCTAGAGAGTGGAATCGTGATCTTCAGTACAGGGGCAGAGTCCGAGT CCAGCTCAAACAGGAAGATGGCAGCCTCTGTCTTGTACAGTTCCCATCACGTAAGTCAGT AATGTTGTATGCTGCGGAAATGATACCTAAACTAAAAACAAGGACACAAAAAACAGGAGG CGGTGACCAAAGTCTTCAGCAAGGAGAGGGAAGTAAAAAAGGGAAAGGAAAGAAGAAGAA GTAACCTGATATGAGAATCAAGGATGTGGTACTACTGTAAGAGTAGAATGGAGGCTTCCA ATTTGTGTCTGAAGGAAACAGAAGCTTTTTGTTTTCATCCTTTAACTGAACTATGAATAT TTGTGCCTCCCAGCTTCAGCATCCAAGTTACAGTGAAATAAATTTACATCAGAAGTTGGC ATCTAGCTCTTACGCAGTTAAAAAAAATTTTTTTTGCATTTCAATGCAGTTTTTGTGGAA GAAAGAAGCATAATTTTAGATGGACAGTGGACTCTACCATGTGTTACCTGAAATCCTGTA TTTGTTTGTCGTCTTTGTAAACATGTTTCAGTTTAGTAAGATTTGAAATACACATTTTGT TCATCTTAAGTTAATGAAATAAAATTTGAAAGCGAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGGACTTCCGCCGGAAACGGGGTGGCCTGGAACCTCTCCTAGTGGAGATTCCGCTGTTT TTTTTTCCTCTTCTGGTCGTGTCTTGGCACTGTCTGGGCCTGAGTGAAGATGGCTTGCGC CGCCGCACGGTCCCCGGCCGACCAGGACAGGTTCATTTGTATCTATCCTGCATATTTAAA TAACAAGAAGACCATTGCGGAGGGGAGGCGAATTCCCATAAGTAAGGCTGTTGAAAATCC TACAGCTACAGAGATTCAAGATGTATGCTCAGCAGTTGGACTTAATGTCTTTCTTGAGAA AAATAAGATGTACTCTAGAGAGTGGAATCGTGATCTTCAGTACAGGGGCAGAGTCCGAGT CCAGCTCAAACAGGAAGATGGCAGCCTCTGTCTTGTACAGTTCCCATCACGTAAGTCAGT AATGTTGTATGCTGCGGAAATGATACCTAAACTAAAAACAAGGACACAAAAAACAGGAGG CGGTGACCAAAGTCTTCAGCAAGGAGAGGGAAGTAAAAAAGGGAAAGGAAAGAAGAAGAA GTAACCTGATATGAGAATCAAGGATGTGGTACTACTGTAAGAGTAGAATGGAGGCTTCCA ATTTGTGTCTGAAGGAAACAGAAGCTTTTTGTTTTCATCCTTTAACTGAACTATGAATAT TTGTGCCTCCCAGCTTCAGCATCCAAGTTACAGTGAAATAAATTTACATCAGAAGTTGGC ATCTAGCTCTTACGCAGTTAAAAAAAATTTTTTTTGCATTTCAATGCAGTTTTTGTGGAA GAAAGAAGCATAATTTTAGATGGACAGTGGACTCTACCATGTGTTACCTGAAATCCTGTA TTTGTTTGTCGTCTTTGTAAACATGTTTCAGTTTAGTAAGATTTGAAATACACATTTTGT TCATCTTAAGTTAATGAAATAAAATTTGAAAGCGAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 271-948, gnl|bosTau2|chr2 (12241974-12242667) | |
| 271-948, gnl|canFam2|chr4 (86799160-86799706) | |
| 271-948, gnl|canFam2|chr4 (86799160-86799706) | |
| 271-948, gnl|dasNov1|scaffold_123463 (2227-1685) | |
| 271-948, gnl|dasNov1|scaffold_123463 (2227-1685) | |
| 271-948, gnl|echTel1|scaffold_238410 (3647-3116) | |
| 271-948, gnl|echTel1|scaffold_238410 (3647-3116) | |
| 271-948, gnl|Hg17|chr4 (132952619-132951941) | |
| 271-948, gnl|hg17|chr4_random (962835-963394) | |
| 271-948, gnl|hg17|chr9 (44224570-44225128) | |
| 271-948, gnl|mm7|chr8 (127858513-127858972) | |
| 271-948, gnl|mm7|chr8 (127858513-127858972) | |
| 271-948, gnl|monDom2|scaffold_11 (21673786-21674416) | |
| 271-948, gnl|monDom2|scaffold_202 (610000-610611) | |
| 271-948, gnl|oryCun1|scaffold_104948 (10043-9500) | |
| 271-948, gnl|oryCun1|scaffold_104948 (10042-9500) | |
| 271-948, gnl|panTro1|chr11 (43285296-43285846) | |
| 271-948, gnl|panTro1|chr3 (149919279-149919839) | |
| 271-948, gnl|rheMac2|chr5 (124010967-124011525) | |
| 271-948, gnl|rheMac2|chr5 (124010968-124011525) | |
| 271-948, gnl|rn3|chr18 (26847009-26846504) | |
| 271-948, gnl|rn3|chr18 (26847009-26846504) | |
| 411-931, gnl|bosTau2|chr10 (9493416-9493953) | |
| 411-931, gnl|Hg17|chr5 (112231000-112231499) | |
| 411-931, gnl|Mm7|chr18 (34711564-34712059) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 271-948, gnl|bosTau2|chr2 (12241974-12242667) | |
| 271-948, gnl|canFam2|chr4 (86799160-86799706) | |
| 271-948, gnl|canFam2|chr4 (86799160-86799706) | |
| 271-948, gnl|dasNov1|scaffold_123463 (2227-1685) | |
| 271-948, gnl|dasNov1|scaffold_123463 (2227-1685) | |
| 271-948, gnl|echTel1|scaffold_238410 (3647-3116) | |
| 271-948, gnl|echTel1|scaffold_238410 (3647-3116) | |
| 271-948, gnl|Hg17|chr4 (132952619-132951941) | |
| 271-948, gnl|hg17|chr4_random (962835-963394) | |
| 271-948, gnl|hg17|chr9 (44224570-44225128) | |
| 271-948, gnl|mm7|chr8 (127858513-127858972) | |
| 271-948, gnl|mm7|chr8 (127858513-127858972) | |
| 271-948, gnl|monDom2|scaffold_11 (21673786-21674416) | |
| 271-948, gnl|monDom2|scaffold_202 (610000-610611) | |
| 271-948, gnl|oryCun1|scaffold_104948 (10043-9500) | |
| 271-948, gnl|oryCun1|scaffold_104948 (10042-9500) | |
| 271-948, gnl|panTro1|chr11 (43285296-43285846) | |
| 271-948, gnl|panTro1|chr3 (149919279-149919839) | |
| 271-948, gnl|rheMac2|chr5 (124010967-124011525) | |
| 271-948, gnl|rheMac2|chr5 (124010968-124011525) | |
| 271-948, gnl|rn3|chr18 (26847009-26846504) | |
| 271-948, gnl|rn3|chr18 (26847009-26846504) | |
| 411-931, gnl|bosTau2|chr10 (9493416-9493953) | |
| 411-931, gnl|Hg17|chr5 (112231000-112231499) | |
| 411-931, gnl|Mm7|chr18 (34711564-34712059) |
| Expressed library(ies): 51 entry(ies) | More info |
| Expressed library(ies): 51 entry(ies) | Help | Less info |
| sug (0.636456) | |
| ret (0.514933) | |
| tbr (0.462535) | |
| isp (0.451128) | |
| amn (0.417711) | |
| tes (0.415628) | |
| kid (0.389206) | |
| ova (0.387397) | |
| nep (0.36785) | |
| spc (0.340097) | |
| cje (0.330469) | |
| fco (0.314416) | |
| lun (0.300978) | |
| cte (0.29274) | |
| liv (0.292569) | |
| lin (0.291206) | |
| ldo (0.291008) | |
| spl (0.286369) | |
| lnt (0.284616) | |
| ste (0.270416) | |
| pla (0.267344) | |
| lyg (0.266205) | |
| tra (0.246184) | |
| cbe (0.239234) | |
| pgl (0.236967) | |
| sag (0.182715) | |
| gul (0.177588) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| cki (0.165235) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| ski (0.146735) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| che (0.136314) | |
| thg (0.126791) | |
| ese (0.126502) | |
| bla (0.124347) | |
| eep (0.122564) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| med (0.116252) | |
| nbm (0.0993246) | |
| eje (0.0988338) |
| Expressed library(ies): 51 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sug (0.636456) | |
| ret (0.514933) | |
| tbr (0.462535) | |
| isp (0.451128) | |
| amn (0.417711) | |
| tes (0.415628) | |
| kid (0.389206) | |
| ova (0.387397) | |
| nep (0.36785) | |
| spc (0.340097) | |
| cje (0.330469) | |
| fco (0.314416) | |
| lun (0.300978) | |
| cte (0.29274) | |
| liv (0.292569) | |
| lin (0.291206) | |
| ldo (0.291008) | |
| spl (0.286369) | |
| lnt (0.284616) | |
| ste (0.270416) | |
| pla (0.267344) | |
| lyg (0.266205) | |
| tra (0.246184) | |
| cbe (0.239234) | |
| pgl (0.236967) | |
| sag (0.182715) | |
| gul (0.177588) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| cki (0.165235) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| ski (0.146735) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| che (0.136314) | |
| thg (0.126791) | |
| ese (0.126502) | |
| bla (0.124347) | |
| eep (0.122564) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| med (0.116252) | |
| nbm (0.0993246) | |
| eje (0.0988338) |