Non-Coding RNA Search

Ss1.1-LyN1-MLN01C070006.5

Sequence:


               
               GCGAAATGAAAATATCTATCAAATCTATTCAAAGCGATCTGCTGAAGATATTTATAAAAT
ACTGACATCCTACAAGGCTAATTACCTAATTGTAGAAGATGCTATCTGCAACGAGGTGGG
AACCACAAGAGGATGTAGGGTTAAAGACTTATTAGACATTGCAAATGGCCATGTCGTTTG
TGAAGAAGGTGACAAGTTAACCTACTCAAAACATGGGCGATTTTGTCATGAGGTCAAAAT
TAACTATTCTCCATATATGAATTATTTCACTAGAGTATACTGGAACAGATCCTACTTTGT
ATATAAAATCAACACTGTGATATCCTTTCAGTCTTGAAAAATAGCAGAGCCTTCATTTCA
AAGATGTAGACATCTGATGTAAAGTGCAGTTTTCTTCTACCTACATGGTGTCTTTCAGAA
ATCAGAGCTTGGACATGTGAAATGTTGCTGCTGCTTTTCCCCTCCTGCTGTTAACTGGAT
CTAGAGTTCTGTGGGGAAAAGAAGATCAAACAGTACTGTTCTTTGGTAAAATGTCAAATC
TGCCATTCTGCAGTATTCCAGCCAGGTGTTTTTCTTAGTGTTACATGTTCCTCTAGACTG
TCGTAAAATTTTCCTCTTAAATCTTCATTCCATCATAGCATTGGTCTTGAATTTGAATAT
GTTCAAGGCCAGAGTATAGTTCTCAACCATAACATTTAATAAATACTTGATGTGATATAA
TTTTAGAATAGAAGGAAAGAATTATTCTTAACCTCAAGGCAGTTTCTGAAGGTAATTTCA
TGGTGTATAATAAAACGAAACTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGAAATGAAAATATCTATCAAATCTATTCAAAGCGATCTGCTGAAGATATTTATAAAAT
ACTGACATCCTACAAGGCTAATTACCTAATTGTAGAAGATGCTATCTGCAACGAGGTGGG
AACCACAAGAGGATGTAGGGTTAAAGACTTATTAGACATTGCAAATGGCCATGTCGTTTG
TGAAGAAGGTGACAAGTTAACCTACTCAAAACATGGGCGATTTTGTCATGAGGTCAAAAT
TAACTATTCTCCATATATGAATTATTTCACTAGAGTATACTGGAACAGATCCTACTTTGT
ATATAAAATCAACACTGTGATATCCTTTCAGTCTTGAAAAATAGCAGAGCCTTCATTTCA
AAGATGTAGACATCTGATGTAAAGTGCAGTTTTCTTCTACCTACATGGTGTCTTTCAGAA
ATCAGAGCTTGGACATGTGAAATGTTGCTGCTGCTTTTCCCCTCCTGCTGTTAACTGGAT
CTAGAGTTCTGTGGGGAAAAGAAGATCAAACAGTACTGTTCTTTGGTAAAATGTCAAATC
TGCCATTCTGCAGTATTCCAGCCAGGTGTTTTTCTTAGTGTTACATGTTCCTCTAGACTG
TCGTAAAATTTTCCTCTTAAATCTTCATTCCATCATAGCATTGGTCTTGAATTTGAATAT
GTTCAAGGCCAGAGTATAGTTCTCAACCATAACATTTAATAAATACTTGATGTGATATAA
TTTTAGAATAGAAGGAAAGAATTATTCTTAACCTCAAGGCAGTTTCTGAAGGTAATTTCA
TGGTGTATAATAAAACGAAACTCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61864529|ref|XP_609930.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61864529|ref|XP_609930.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               168-792, gnl|bosTau2|chr14 (42762669-42763285)
               

               
               168-792, gnl|Hg17|chr8 (95871145-95871761)
               

               
               168-792, gnl|Mm7|chr4 (11193094-11192506)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               168-792, gnl|bosTau2|chr14 (42762669-42763285)
               

               
               168-792, gnl|Hg17|chr8 (95871145-95871761)
               

               
               168-792, gnl|Mm7|chr4 (11193094-11192506)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               pro (0.512033)
               

               
               mgp (0.230681)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               mga (0.160205)
               

               
               liv (0.146284)
               

               
               ova (0.129132)
               

               
               tra (0.123092)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               mgp (0.230681)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               mga (0.160205)
               

               
               liv (0.146284)
               

               
               ova (0.129132)
               

               
               tra (0.123092)

	168-792, gnl\|bosTau2\|chr14 (42762669-42763285)
	168-792, gnl\|Hg17\|chr8 (95871145-95871761)
	168-792, gnl\|Mm7\|chr4 (11193094-11192506)

	pro (0.512033)
	mgp (0.230681)
	aor (0.195274)
	sag (0.182715)
	mga (0.160205)
	liv (0.146284)
	ova (0.129132)
	tra (0.123092)