Non-Coding RNA Search

Ss1.1-LyN1-MLN01C070035.5

Sequence:


               
               TTCCGCCGGGGCACGGCCTCCTCCACGCCCGCCTCCTCCGGGCTGCCCTCCCCGCTGGCC
TTCTTCACGGGGCTGGACGACAGGCTCTTGGGGAGCTTGCTGGAGCCCTTCTCTGCGGCC
TCCTTCTCGTTCAGCTGGGGCAGGGACATGGCATTCTTGACGAAGAGGGCCGAGTCCCGC
AGGGAGCCCAGCATGTCCCTCTGCTCCCGGTCCCCCCTGGTCACTGACTGCGACCGCTTG
CTGCCCCGGAACTTCCGGGAGAGGAGGCTGCGTTTAGAGGACGAGGAGGAGGCCTGCTCG
TCCATGGACTCACTGTCCAGCTCCCCGGCCTTGCTGTTGAGAAAGGAAGTGTCCCCAAAG
GCGTCCCCCGCCCGGCCCACGTGCATGGTGTGGCGGAAGTCACCCAGCGGGGCACTGATC
ATCTCAGCCGTGAGGTCCACTCGGGAGCGACGCTTGGAGTGTACGGAGCTGGACACCAGC
TGCTTGAGGATCGGCATCTTGCCGGAGGGGAGGGGTCCCTCTAAGCAACAGGTGGATCTG
GGGTCAGATCTGAAGTCCGGTGGGTGGAGGGGGCGATAAGGAGGTGATCATAAGGCTGGG
TCCCCAGAGACGCGAGCGCCGAGCCGGCGCGGCTGCGCTGTCCCCTCGGTGGGCTCCGCG
AGGCGGCGGGGCTGGCGGCCCATGTCCGCGCCGGCGTCTGTTTCCTCGGGCTCCAGCTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCGCCGGGGCACGGCCTCCTCCACGCCCGCCTCCTCCGGGCTGCCCTCCCCGCTGGCC
TTCTTCACGGGGCTGGACGACAGGCTCTTGGGGAGCTTGCTGGAGCCCTTCTCTGCGGCC
TCCTTCTCGTTCAGCTGGGGCAGGGACATGGCATTCTTGACGAAGAGGGCCGAGTCCCGC
AGGGAGCCCAGCATGTCCCTCTGCTCCCGGTCCCCCCTGGTCACTGACTGCGACCGCTTG
CTGCCCCGGAACTTCCGGGAGAGGAGGCTGCGTTTAGAGGACGAGGAGGAGGCCTGCTCG
TCCATGGACTCACTGTCCAGCTCCCCGGCCTTGCTGTTGAGAAAGGAAGTGTCCCCAAAG
GCGTCCCCCGCCCGGCCCACGTGCATGGTGTGGCGGAAGTCACCCAGCGGGGCACTGATC
ATCTCAGCCGTGAGGTCCACTCGGGAGCGACGCTTGGAGTGTACGGAGCTGGACACCAGC
TGCTTGAGGATCGGCATCTTGCCGGAGGGGAGGGGTCCCTCTAAGCAACAGGTGGATCTG
GGGTCAGATCTGAAGTCCGGTGGGTGGAGGGGGCGATAAGGAGGTGATCATAAGGCTGGG
TCCCCAGAGACGCGAGCGCCGAGCCGGCGCGGCTGCGCTGTCCCCTCGGTGGGCTCCGCG
AGGCGGCGGGGCTGGCGGCCCATGTCCGCGCCGGCGTCTGTTTCCTCGGGCTCCAGCTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|5713142|gb|AAD47822.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|5713142|gb|AAD47822.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               92-251, - strand, RNAz p=0.916202
               

               
               446-573, - strand, RNAz p=0.988936

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               92-251, - strand, RNAz p=0.916202
               

               
               446-573, - strand, RNAz p=0.988936

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               31-573, gnl|bosTau2|chr19 (52602685-52602148)
               

               
               31-573, gnl|Hg17|chr17 (68793750-68794252)
               

               
               31-573, gnl|Mm7|chr11 (113838148-113838624)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               31-573, gnl|bosTau2|chr19 (52602685-52602148)
               

               
               31-573, gnl|Hg17|chr17 (68793750-68794252)
               

               
               31-573, gnl|Mm7|chr11 (113838148-113838624)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	92-251, - strand, RNAz p=0.916202
	446-573, - strand, RNAz p=0.988936

	31-573, gnl\|bosTau2\|chr19 (52602685-52602148)
	31-573, gnl\|Hg17\|chr17 (68793750-68794252)
	31-573, gnl\|Mm7\|chr11 (113838148-113838624)