Non-Coding RNA Search

Ss1.1-LyN1-MLN01C070051.5

Sequence:


               
               CAGGCGGAGATTGCACCATGGCCCCGGACCCCTGGTTCTCCACGTACGATTCTACCTGCC
AAATTGCACAAGAGATTGCTGAGAAAATTCAACAACGGAATCAGTATGAAAGAAATGGTG
AAAATACAACCAAGCTTACGGTGACAATCAGAGCTTTGTTGCAGAAACTGAAGGAAAAGA
TCGCCCTTTTGAAGGACTTATTGCTAAGAGCTGTGTCAACACATCAGATAACGCAGCTCG
AAGGAGACCGAAGACAGAACCTATTGGACGATCTTGTAACTCGAGAGAGACTCCTTCTGG
CCTCCTTTAAGAAGGAGGGCGCAGAGCCGGAACCCATCAGGTCCAGCCTGATGACAGGAG
GGGCCAAGCGGGCAGTACCCAACCCTTGGCTCTTCGAGGAGCCGGAGGAGACCAGAGGCT
TGGGCTTTGACGAAATCCGGCAACAGCAGCAGAAAATCATCCAAGAACAGGATGCAGGCC
TGGATGCCCTTTCCTCGATCATAAGTCGCCAGAAACAAATGGGGCAGGAAATTGGGAATG
AACTGGATGAACAAAACGAGATAATTGATGACCTCGCCAACCTGGTGGAGAACACCAACG
AGAAGCTCCGCACCGAAACCAGGCGCGTGACCCTGGTGGACCGGAAGTCCACGTCCTGCG
GGATGATACTGGTGATCGTGTTGCTGCTCGTGGCCATCGTGGTCGTGGCAGTCTGGCCGA
CCAACTAGTGGCAGTCGGGGGCCCACCGGCCATGACACCTGCCAGTGATGGAGAAAACTC
AGCATCCTCTTGGTACACGAAAGCTGCTCTCAATAAATGCCCCCAAAGCTCTCAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGCGGAGATTGCACCATGGCCCCGGACCCCTGGTTCTCCACGTACGATTCTACCTGCC
AAATTGCACAAGAGATTGCTGAGAAAATTCAACAACGGAATCAGTATGAAAGAAATGGTG
AAAATACAACCAAGCTTACGGTGACAATCAGAGCTTTGTTGCAGAAACTGAAGGAAAAGA
TCGCCCTTTTGAAGGACTTATTGCTAAGAGCTGTGTCAACACATCAGATAACGCAGCTCG
AAGGAGACCGAAGACAGAACCTATTGGACGATCTTGTAACTCGAGAGAGACTCCTTCTGG
CCTCCTTTAAGAAGGAGGGCGCAGAGCCGGAACCCATCAGGTCCAGCCTGATGACAGGAG
GGGCCAAGCGGGCAGTACCCAACCCTTGGCTCTTCGAGGAGCCGGAGGAGACCAGAGGCT
TGGGCTTTGACGAAATCCGGCAACAGCAGCAGAAAATCATCCAAGAACAGGATGCAGGCC
TGGATGCCCTTTCCTCGATCATAAGTCGCCAGAAACAAATGGGGCAGGAAATTGGGAATG
AACTGGATGAACAAAACGAGATAATTGATGACCTCGCCAACCTGGTGGAGAACACCAACG
AGAAGCTCCGCACCGAAACCAGGCGCGTGACCCTGGTGGACCGGAAGTCCACGTCCTGCG
GGATGATACTGGTGATCGTGTTGCTGCTCGTGGCCATCGTGGTCGTGGCAGTCTGGCCGA
CCAACTAGTGGCAGTCGGGGGCCCACCGGCCATGACACCTGCCAGTGATGGAGAAAACTC
AGCATCCTCTTGGTACACGAAAGCTGCTCTCAATAAATGCCCCCAAAGCTCTCAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q53XT8_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q53XT8_HUMAN

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               558-870, gnl|bosTau2|chr22 (4077016-4076691)
               

               
               558-870, gnl|Hg17|chr12 (12815721-12815437)
               


               
               660-832, gnl|bosTau2|chr19 (21470043-21469870)
               

               
               660-832, gnl|Hg17|chr17 (9094688-9094476)
               

               
               660-832, gnl|Mm7|chr11 (68285279-68285451)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               558-870, gnl|bosTau2|chr22 (4077016-4076691)
               

               
               558-870, gnl|Hg17|chr12 (12815721-12815437)
               


               
               660-832, gnl|bosTau2|chr19 (21470043-21469870)
               

               
               660-832, gnl|Hg17|chr17 (9094688-9094476)
               

               
               660-832, gnl|Mm7|chr11 (68285279-68285451)

Expressed library(ies): 20 entry(ies)

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Expressed library(ies): 20 entry(ies)

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               elu (0.385356)
               

               
               eye (0.341006)
               

               
               hyp (0.285673)
               

               
               cga (0.279096)
               

               
               cly (0.241284)
               

               
               jca (0.22792)
               

               
               eje (0.197668)
               

               
               ldo (0.194005)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               eli (0.151814)
               

               
               fat (0.147427)
               

               
               lnt (0.142308)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               jej (0.0989218)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               eye (0.341006)
               

               
               hyp (0.285673)
               

               
               cga (0.279096)
               

               
               cly (0.241284)
               

               
               jca (0.22792)
               

               
               eje (0.197668)
               

               
               ldo (0.194005)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               eli (0.151814)
               

               
               fat (0.147427)
               

               
               lnt (0.142308)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               jej (0.0989218)

	558-870, gnl\|bosTau2\|chr22 (4077016-4076691)
	558-870, gnl\|Hg17\|chr12 (12815721-12815437)

	660-832, gnl\|bosTau2\|chr19 (21470043-21469870)
	660-832, gnl\|Hg17\|chr17 (9094688-9094476)
	660-832, gnl\|Mm7\|chr11 (68285279-68285451)

	elu (0.385356)
	eye (0.341006)
	hyp (0.285673)
	cga (0.279096)
	cly (0.241284)
	jca (0.22792)
	eje (0.197668)
	ldo (0.194005)
	nlu (0.191681)
	nep (0.183925)
	ton (0.1755)
	fbs (0.175346)
	eli (0.151814)
	fat (0.147427)
	lnt (0.142308)
	bla (0.124347)
	eru (0.120048)
	ebs (0.118301)
	med (0.116252)
	jej (0.0989218)