Ss1.1-LyN1-MLN01C070082.5
|
TTTCCTCTCCGCTGTAGATGTAGTCCTTTTCTGCGAGTGGGCGCTTTTCTTCCTCCGCTC
CCGCAGGGTCCGCGGCCGCCATGGCGTATTAGAGGCAGCAGTGCCTGCGGCAGCATTGGC
CTTTGCAGCGGCGGCAGCAGCACCAGGCTCTGCAGCGGCACCCCCCAGCGGCTTAAGCCA
TGGCGCTTCTCACGGCATTCAGCAGCAGCGTTGCTGTAACCGACAAAGACACCTTCGAAT
TAAGCACATTCCTCGATTCCATCAAAACTCCGCAACATGGCCGAGATGAGCTTCCTGAGC
AGCGAGGTGTTGGTGGGGGACTTGATGTCCCCCTTCGACCCGTCGGGTTTGGGGGCTGAA
GAGAGCTTAGGGCTCTTAGACGAATATCTGGAGGTGGCCAAGCACTTCAAACCTCATGGG
TTCTCCGGCGACAAAGCTAAGGCGGGCTCCTCCGAATGGCTGGCTGTGGATGGGTTGGTC
AGTGCCTCAGACAACAGCAAGGAGGATGCTTTCTCCGGGACAGACTGGATGGTGGAGAAA
ATGGATCTGAAGGAGTTCGACTTCGATGCCCTGTTGGGTATAGATGACCTGGAAACCATG
CCAGATGAGCTTTTGGCCACGTTGGATGACACATGTGATCTCTTTGACCCCCCACTCCAG
GAGCCCCCGCAGATAGTGAACCCAATTGGCCATCTCCCAGAAAGTTTACCAACAACTGAC
CAGGTTGCCCCCTTTACGTTCTTGCAAACTCTTCCCCTTTCCCCAGGGGCCCTGTCTTCC
ACTCCAGATAATTCCTTTAGTTTAGAGATACAGGGTGAAGTGGAAATCTCGGAAGGAGAT
AGGAAGCCAGACTCCACTACTTACATTACCTTGATTCCTCAATGCATAAAGGAAGAGGAT
GCCCCCTCAGATAATGACAGTGGCATCTGTATGAGCCCTGACTCCTATCTGGGCTCTCCC
CAGCACAGTCCCTCCACCTCCAGGGCCTCTCCAAGTAGGAGCTTGCTCTCTCCCGGGGCC
CCTTGTGGTTCTGTCCGGCCCAAACCCTATGATCCTCCTGGAGAGAAGGTGGTAGCAGCA
AAAGTAAAGGGTGAGAAACTAGATAAGAAGCTGAAGAAGATGGAGCAGAACAAGACAGCA
GCCACTCGGTACCGCCAGAAGAAGAGGGCAGAGCAGGAGGCCCTCACTGGCGAATGTAAA
GAGCTGGAAAAGAAGAACGAAGCTCTGAAAGAGAAGGCAGATTCCTTGGCCAAGGAGATT
CAGTATCTCAAAGATCTGATAGAAGAGGTCCGCAAGGCACGGGGGAAGAAACGCGCCCCC
TAGCTGCCGGGCAGGGGTGTGCATGTGCTTGTACATAGGCTAGGGCTTTAGCTGTGTGTT
GCAATAAATTATTTTGTAGTGAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TTTCCTCTCCGCTGTAGATGTAGTCCTTTTCTGCGAGTGGGCGCTTTTCTTCCTCCGCTC
CCGCAGGGTCCGCGGCCGCCATGGCGTATTAGAGGCAGCAGTGCCTGCGGCAGCATTGGC
CTTTGCAGCGGCGGCAGCAGCACCAGGCTCTGCAGCGGCACCCCCCAGCGGCTTAAGCCA
TGGCGCTTCTCACGGCATTCAGCAGCAGCGTTGCTGTAACCGACAAAGACACCTTCGAAT
TAAGCACATTCCTCGATTCCATCAAAACTCCGCAACATGGCCGAGATGAGCTTCCTGAGC
AGCGAGGTGTTGGTGGGGGACTTGATGTCCCCCTTCGACCCGTCGGGTTTGGGGGCTGAA
GAGAGCTTAGGGCTCTTAGACGAATATCTGGAGGTGGCCAAGCACTTCAAACCTCATGGG
TTCTCCGGCGACAAAGCTAAGGCGGGCTCCTCCGAATGGCTGGCTGTGGATGGGTTGGTC
AGTGCCTCAGACAACAGCAAGGAGGATGCTTTCTCCGGGACAGACTGGATGGTGGAGAAA
ATGGATCTGAAGGAGTTCGACTTCGATGCCCTGTTGGGTATAGATGACCTGGAAACCATG
CCAGATGAGCTTTTGGCCACGTTGGATGACACATGTGATCTCTTTGACCCCCCACTCCAG
GAGCCCCCGCAGATAGTGAACCCAATTGGCCATCTCCCAGAAAGTTTACCAACAACTGAC
CAGGTTGCCCCCTTTACGTTCTTGCAAACTCTTCCCCTTTCCCCAGGGGCCCTGTCTTCC
ACTCCAGATAATTCCTTTAGTTTAGAGATACAGGGTGAAGTGGAAATCTCGGAAGGAGAT
AGGAAGCCAGACTCCACTACTTACATTACCTTGATTCCTCAATGCATAAAGGAAGAGGAT
GCCCCCTCAGATAATGACAGTGGCATCTGTATGAGCCCTGACTCCTATCTGGGCTCTCCC
CAGCACAGTCCCTCCACCTCCAGGGCCTCTCCAAGTAGGAGCTTGCTCTCTCCCGGGGCC
CCTTGTGGTTCTGTCCGGCCCAAACCCTATGATCCTCCTGGAGAGAAGGTGGTAGCAGCA
AAAGTAAAGGGTGAGAAACTAGATAAGAAGCTGAAGAAGATGGAGCAGAACAAGACAGCA
GCCACTCGGTACCGCCAGAAGAAGAGGGCAGAGCAGGAGGCCCTCACTGGCGAATGTAAA
GAGCTGGAAAAGAAGAACGAAGCTCTGAAAGAGAAGGCAGATTCCTTGGCCAAGGAGATT
CAGTATCTCAAAGATCTGATAGAAGAGGTCCGCAAGGCACGGGGGAAGAAACGCGCCCCC
TAGCTGCCGGGCAGGGGTGTGCATGTGCTTGTACATAGGCTAGGGCTTTAGCTGTGTGTT
GCAATAAATTATTTTGTAGTGAAAAAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
2-185, gnl|bosTau2|chr5 (19514-19329) |
|
2-185, gnl|canFam2|chr10 (28597621-28597747) |
|
2-185, gnl|dasNov1|scaffold_13011 (10964-11087) |
|
2-185, gnl|echTel1|scaffold_104777 (632-536) |
|
2-185, gnl|hg17|chr17 (71734575-71734702) |
|
2-185, gnl|Hg17|chr22 (38241076-38241257) |
|
2-185, gnl|loxAfr1|scaffold_17213 (60142-60015) |
|
2-185, gnl|mm7|chr15 (80340167-80340041) |
|
2-185, gnl|Mm7|chr15 (80339986-80340167) |
|
2-185, gnl|monDom2|scaffold_133 (1690357-1690481) |
|
2-185, gnl|oryCun1|scaffold_112425 (7144-7029) |
|
2-185, gnl|panTro1|chr19 (75096428-75096555) |
|
2-185, gnl|rheMac2|chr10 (83447383-83447255) |
|
2-185, gnl|rn3|chr7 (118571359-118571233) |
| |
|
502-1404, gnl|bosTau2|chr5 (18334-17431) |
|
502-1404, gnl|Hg17|chr22 (38242277-38243188) |
|
502-1404, gnl|Mm7|chr15 (80341114-80342019) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
2-185, gnl|bosTau2|chr5 (19514-19329) |
|
2-185, gnl|canFam2|chr10 (28597621-28597747) |
|
2-185, gnl|dasNov1|scaffold_13011 (10964-11087) |
|
2-185, gnl|echTel1|scaffold_104777 (632-536) |
|
2-185, gnl|hg17|chr17 (71734575-71734702) |
|
2-185, gnl|Hg17|chr22 (38241076-38241257) |
|
2-185, gnl|loxAfr1|scaffold_17213 (60142-60015) |
|
2-185, gnl|mm7|chr15 (80340167-80340041) |
|
2-185, gnl|Mm7|chr15 (80339986-80340167) |
|
2-185, gnl|monDom2|scaffold_133 (1690357-1690481) |
|
2-185, gnl|oryCun1|scaffold_112425 (7144-7029) |
|
2-185, gnl|panTro1|chr19 (75096428-75096555) |
|
2-185, gnl|rheMac2|chr10 (83447383-83447255) |
|
2-185, gnl|rn3|chr7 (118571359-118571233) |
| |
|
502-1404, gnl|bosTau2|chr5 (18334-17431) |
|
502-1404, gnl|Hg17|chr22 (38242277-38243188) |
|
502-1404, gnl|Mm7|chr15 (80341114-80342019) |
|
ldo (3.97711) |
|
ste (2.83937) |
|
ssp (2.57487) |
|
cje (1.48711) |
|
tbr (1.23343) |
|
che (1.22683) |
|
ece (1.14653) |
|
cty (1.14488) |
|
nmm (0.929615) |
|
amn (0.835422) |
|
elu (0.770713) |
|
nlu (0.766724) |
|
jca (0.683761) |
|
mas (0.630915) |
|
cag (0.604778) |
|
cly (0.603209) |
|
med (0.58126) |
|
lnt (0.569233) |
|
duo (0.518403) |
|
csp (0.483559) |
|
bfe (0.449573) |
|
nca (0.410621) |
|
col (0.390016) |
|
ese (0.379507) |
|
eru (0.360144) |
|
sto (0.359648) |
|
pgl (0.35545) |
|
ill (0.351185) |
|
eye (0.341006) |
|
cut (0.339847) |
|
nje (0.33184) |
|
nco (0.323468) |
|
cli (0.305623) |
|
sme (0.305437) |
|
eje (0.296501) |
|
hyp (0.285673) |
|
pty (0.285429) |
|
cst (0.280073) |
|
cga (0.279096) |
|
fce (0.271592) |
|
tra (0.246184) |
|
eep (0.245128) |
|
clu (0.239292) |
|
cbe (0.239234) |
|
tes (0.207814) |
|
hea (0.204499) |
|
aor (0.195274) |
|
cmu (0.186393) |
|
nep (0.183925) |
|
gul (0.177588) |
|
ton (0.1755) |
|
fbs (0.175346) |
|
sin (0.174948) |
|
rec (0.17307) |
|
mcp (0.170648) |
|
fhi (0.169578) |
|
ctl (0.153069) |
|
eli (0.151814) |
|
fat (0.147427) |
|
lin (0.145603) |
|
hlv (0.139256) |
|
lyg (0.133103) |
|
ret (0.128733) |
|
sug (0.127291) |
|
ebs (0.118301) |
|
nbm (0.0993246) |
|
jej (0.0989218) |
|
ldo (3.97711) |
|
ste (2.83937) |
|
ssp (2.57487) |
|
cje (1.48711) |
|
tbr (1.23343) |
|
che (1.22683) |
|
ece (1.14653) |
|
cty (1.14488) |
|
nmm (0.929615) |
|
amn (0.835422) |
|
elu (0.770713) |
|
nlu (0.766724) |
|
jca (0.683761) |
|
mas (0.630915) |
|
cag (0.604778) |
|
cly (0.603209) |
|
med (0.58126) |
|
lnt (0.569233) |
|
duo (0.518403) |
|
csp (0.483559) |
|
bfe (0.449573) |
|
nca (0.410621) |
|
col (0.390016) |
|
ese (0.379507) |
|
eru (0.360144) |
|
sto (0.359648) |
|
pgl (0.35545) |
|
ill (0.351185) |
|
eye (0.341006) |
|
cut (0.339847) |
|
nje (0.33184) |
|
nco (0.323468) |
|
cli (0.305623) |
|
sme (0.305437) |
|
eje (0.296501) |
|
hyp (0.285673) |
|
pty (0.285429) |
|
cst (0.280073) |
|
cga (0.279096) |
|
fce (0.271592) |
|
tra (0.246184) |
|
eep (0.245128) |
|
clu (0.239292) |
|
cbe (0.239234) |
|
tes (0.207814) |
|
hea (0.204499) |
|
aor (0.195274) |
|
cmu (0.186393) |
|
nep (0.183925) |
|
gul (0.177588) |
|
ton (0.1755) |
|
fbs (0.175346) |
|
sin (0.174948) |
|
rec (0.17307) |
|
mcp (0.170648) |
|
fhi (0.169578) |
|
ctl (0.153069) |
|
eli (0.151814) |
|
fat (0.147427) |
|
lin (0.145603) |
|
hlv (0.139256) |
|
lyg (0.133103) |
|
ret (0.128733) |
|
sug (0.127291) |
|
ebs (0.118301) |
|
nbm (0.0993246) |
|
jej (0.0989218) |
