Non-Coding RNA Search

Ss1.1-LyN1-MLN01C080093.5

Sequence:


               
               TTTCCAGGGCTGGAGGGGTTTTATTTCAGACGGATGCCAGTGCCCCTGGGGACGGATGGC
CTTCCTGGGCGGGGGGCAGGGATACACACACTTGGGCACAGAACTAGTGGGGGGAGTGGC
AGTCTGAGGCTCTCCAAGCAGGGGTGTGGGAGATGATGAGTCCGGGGTAGGCTGTCCAGC
CGTGGCAGCTTGGGAAGCGGAGGCACAGTGGCCGGGCTGTGGCACCAGGGCCGGCTCCTA
CAGGGCGGTGACGTGGAGGCCCTGGCCCCCAGCCGCCCGCGTGCTGTCGTCCCAGGCCGC
GCTGCCAGCAAAGGCGTGTAGGTCGCTCAGCAGGGCCTCGGCACTGCCGCCTGAGCCCCC
CGCCAGCCTCTGGGAGCCCAGGCCCAGGCCCCCTTCGGTGTCGTCGTCGTCGTCGTGTGC
TTCCTCGGCCAGCTCTGGGGCCTGCCGTGCGCTGGGCCCCTCTCCGCATGGCTGCCCCTC
TTCCTGGGATGCGGGTTCCACCCGGCCACCACCCAGGTCGTAGTCATCCTCCATGTCCTG
CTCATCCTGCCGCTCTAGGTCCTCGTCGGGCGACCCCAGCTCCACCCGGGTGCGCAGCCA
GCGGCCTGGTGGGCTGGCCCAGAGCAGGCGGCGCGTGCGGCCCCACAGCTGGGCACCCAG
GCGCGCTGGGTGGTAGTAGCCCCCGGAGTCCTGGCTGAGGCGGCGCCAGGCCAGTGCCAG
GCCAGTGGCCAGCAGTAGGAGCAGCAGCAGCAGCAGGATGACCGTGACCAAGCTGGAGCC
CTCGCTGTCCTTGGTGCCACCTGAGCCCAGGACCCCCGGCAGGGCCAGCAGTGTCCAGAG
CCCGAGGGCGCAGGGCAGGTCCATTGGTCCGCTGGCCTCTCAGTGCTGGGCGCCCACCTC
CAGCTCCGGCTGTGTCGAGTGAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTCCAGGGCTGGAGGGGTTTTATTTCAGACGGATGCCAGTGCCCCTGGGGACGGATGGC
CTTCCTGGGCGGGGGGCAGGGATACACACACTTGGGCACAGAACTAGTGGGGGGAGTGGC
AGTCTGAGGCTCTCCAAGCAGGGGTGTGGGAGATGATGAGTCCGGGGTAGGCTGTCCAGC
CGTGGCAGCTTGGGAAGCGGAGGCACAGTGGCCGGGCTGTGGCACCAGGGCCGGCTCCTA
CAGGGCGGTGACGTGGAGGCCCTGGCCCCCAGCCGCCCGCGTGCTGTCGTCCCAGGCCGC
GCTGCCAGCAAAGGCGTGTAGGTCGCTCAGCAGGGCCTCGGCACTGCCGCCTGAGCCCCC
CGCCAGCCTCTGGGAGCCCAGGCCCAGGCCCCCTTCGGTGTCGTCGTCGTCGTCGTGTGC
TTCCTCGGCCAGCTCTGGGGCCTGCCGTGCGCTGGGCCCCTCTCCGCATGGCTGCCCCTC
TTCCTGGGATGCGGGTTCCACCCGGCCACCACCCAGGTCGTAGTCATCCTCCATGTCCTG
CTCATCCTGCCGCTCTAGGTCCTCGTCGGGCGACCCCAGCTCCACCCGGGTGCGCAGCCA
GCGGCCTGGTGGGCTGGCCCAGAGCAGGCGGCGCGTGCGGCCCCACAGCTGGGCACCCAG
GCGCGCTGGGTGGTAGTAGCCCCCGGAGTCCTGGCTGAGGCGGCGCCAGGCCAGTGCCAG
GCCAGTGGCCAGCAGTAGGAGCAGCAGCAGCAGCAGGATGACCGTGACCAAGCTGGAGCC
CTCGCTGTCCTTGGTGCCACCTGAGCCCAGGACCCCCGGCAGGGCCAGCAGTGTCCAGAG
CCCGAGGGCGCAGGGCAGGTCCATTGGTCCGCTGGCCTCTCAGTGCTGGGCGCCCACCTC
CAGCTCCGGCTGTGTCGAGTGAGA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q6I9S6_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6I9S6_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               709-825, - strand, RNAz p=0.629552

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               709-825, - strand, RNAz p=0.629552

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               9-862, gnl|bosTau2|chr29 (39734954-39734116)
               

               
               9-862, gnl|Hg17|chr11 (66959562-66960398)
               

               
               9-862, gnl|Mm7|chr19 (4051515-4050728)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-862, gnl|bosTau2|chr29 (39734954-39734116)
               

               
               9-862, gnl|Hg17|chr11 (66959562-66960398)
               

               
               9-862, gnl|Mm7|chr19 (4051515-4050728)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               cag (0.755972)
               

               
               csp (0.483559)
               

               
               med (0.348756)
               

               
               lnt (0.284616)
               

               
               cly (0.241284)
               

               
               col (0.195008)
               

               
               fty (0.17584)
               

               
               jej (0.0989218)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.755972)
               

               
               csp (0.483559)
               

               
               med (0.348756)
               

               
               lnt (0.284616)
               

               
               cly (0.241284)
               

               
               col (0.195008)
               

               
               fty (0.17584)
               

               
               jej (0.0989218)

	9-862, gnl\|bosTau2\|chr29 (39734954-39734116)
	9-862, gnl\|Hg17\|chr11 (66959562-66960398)
	9-862, gnl\|Mm7\|chr19 (4051515-4050728)

	cag (0.755972)
	csp (0.483559)
	med (0.348756)
	lnt (0.284616)
	cly (0.241284)
	col (0.195008)
	fty (0.17584)
	jej (0.0989218)