Non-Coding RNA Search

Ss1.1-LyN1-MLN01C090023.5

Sequence:


               
               AAGTAGGCTTACTCTTCCTGTGTCTACAGTGTTGATACTATTTTCAACAGCGAGTCTGAA
AATTTAAGAGTCTCAACCACACCGTGCACAAGAAGTTCAGCTTCCAAGCCCTAGATTTAC
TCTTTTCTAGGGTTCAGAGCCCTTCTCCTGCTGCACGTGGGCAGCCCTGGCCTGCCTGGG
AGACCAACAGATAAAAGCCTCTGAGCCAGGACTAACTGCTGCTTCTCTTCTCAGCGGGAA
CCCCAGCGTGGAGACCTGAGAAAAATGGGGCCAGATCTGAGATGCTTTCCTCTCCTCCTA
TTGCTGCTGGGACTGTGGTGGTCAGTGCGTCCACTTTGTGCCATACCCAAGAATCTCACC
AGGGCTCAATGGTTTACAATTCAGCATATTCAGCCAAGCCCTCTCCAATGCAACAAGGCA
ATGAACGGTGTCAACAATTATACTTGGCACTGTAAGCCTCAAAACACCTTTCTGCACGAC
TCCTTCCAGGATGTGGCCACTGCCTGTAATTTACCCAACATCACCTGTAAGAACGGCCAG
AACAACTGCCACCAGAGTGCAAAGCCTGTTAGCCTGACTCAGTGCAGTTTCACCGGGGGG
AACTATCCGAACTGCCGCTACAAAGATGCCGCCCAATACAAGTTCTTTATTGTTGCCTGT
GATCCCCCGCAGAAGGGCGACCCTCCTTATCCGTTTGTTCCCGTACACTTAGATAAGATC
ATTTAAAGTTTCCATCACTTTCCCTCTCACTCAGCTCGCGTTCTCTTATGATCTCTTCTG
ATTTTTCTTTTGTTGATTTTCCTGGTTCCCATGGAAGAAAAAAAAGGAGGGTGTTGGAAA
AATCAGAGCGATGAGGAGGTTGGACTGGAGTTGGGACAAAAGCTTAGGATTCTTTTCTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGTAGGCTTACTCTTCCTGTGTCTACAGTGTTGATACTATTTTCAACAGCGAGTCTGAA
AATTTAAGAGTCTCAACCACACCGTGCACAAGAAGTTCAGCTTCCAAGCCCTAGATTTAC
TCTTTTCTAGGGTTCAGAGCCCTTCTCCTGCTGCACGTGGGCAGCCCTGGCCTGCCTGGG
AGACCAACAGATAAAAGCCTCTGAGCCAGGACTAACTGCTGCTTCTCTTCTCAGCGGGAA
CCCCAGCGTGGAGACCTGAGAAAAATGGGGCCAGATCTGAGATGCTTTCCTCTCCTCCTA
TTGCTGCTGGGACTGTGGTGGTCAGTGCGTCCACTTTGTGCCATACCCAAGAATCTCACC
AGGGCTCAATGGTTTACAATTCAGCATATTCAGCCAAGCCCTCTCCAATGCAACAAGGCA
ATGAACGGTGTCAACAATTATACTTGGCACTGTAAGCCTCAAAACACCTTTCTGCACGAC
TCCTTCCAGGATGTGGCCACTGCCTGTAATTTACCCAACATCACCTGTAAGAACGGCCAG
AACAACTGCCACCAGAGTGCAAAGCCTGTTAGCCTGACTCAGTGCAGTTTCACCGGGGGG
AACTATCCGAACTGCCGCTACAAAGATGCCGCCCAATACAAGTTCTTTATTGTTGCCTGT
GATCCCCCGCAGAAGGGCGACCCTCCTTATCCGTTTGTTCCCGTACACTTAGATAAGATC
ATTTAAAGTTTCCATCACTTTCCCTCTCACTCAGCTCGCGTTCTCTTATGATCTCTTCTG
ATTTTTCTTTTGTTGATTTTCCTGGTTCCCATGGAAGAAAAAAAAGGAGGGTGTTGGAAA
AATCAGAGCGATGAGGAGGTTGGACTGGAGTTGGGACAAAAGCTTAGGATTCTTTTCTGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|545054|gb|AAB29768.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|545054|gb|AAB29768.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               102-207, - strand, RNAz p=0.833734

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               102-207, - strand, RNAz p=0.833734

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-226, gnl|bosTau2|chr10 (16319452-16319227)
               

               
               1-226, gnl|dasNov1|scaffold_28050 (41978-42456)
               

               
               1-226, gnl|echTel1|scaffold_276800 (42381-41914)
               

               
               1-226, gnl|hg17|chr14 (20318916-20319434)
               

               
               1-226, gnl|Hg17|chr14 (20319073-20319305)
               

               
               1-226, gnl|loxAfr1|scaffold_12868 (18712-19225)
               

               
               1-226, gnl|mm7|chr14 (46462441-46462938)
               

               
               1-226, gnl|Mm7|chr14 (46462598-46462813)
               

               
               1-226, gnl|oryCun1|scaffold_163828 (3021-3512)
               

               
               1-226, gnl|panTro1|chrUn_random (21660596-21661128)
               

               
               1-226, gnl|rheMac2|chr7 (83505270-83505809)
               

               
               1-226, gnl|rn3|chr15 (27131348-27131831)
               


               
               259-848, gnl|bosTau2|chr10 (16318609-16318021)
               

               
               259-848, gnl|Hg17|chr14 (20319692-20320275)
               

               
               259-848, gnl|Mm7|chr14 (46463826-46464415)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-226, gnl|bosTau2|chr10 (16319452-16319227)
               

               
               1-226, gnl|dasNov1|scaffold_28050 (41978-42456)
               

               
               1-226, gnl|echTel1|scaffold_276800 (42381-41914)
               

               
               1-226, gnl|hg17|chr14 (20318916-20319434)
               

               
               1-226, gnl|Hg17|chr14 (20319073-20319305)
               

               
               1-226, gnl|loxAfr1|scaffold_12868 (18712-19225)
               

               
               1-226, gnl|mm7|chr14 (46462441-46462938)
               

               
               1-226, gnl|Mm7|chr14 (46462598-46462813)
               

               
               1-226, gnl|oryCun1|scaffold_163828 (3021-3512)
               

               
               1-226, gnl|panTro1|chrUn_random (21660596-21661128)
               

               
               1-226, gnl|rheMac2|chr7 (83505270-83505809)
               

               
               1-226, gnl|rn3|chr15 (27131348-27131831)
               


               
               259-848, gnl|bosTau2|chr10 (16318609-16318021)
               

               
               259-848, gnl|Hg17|chr14 (20319692-20320275)
               

               
               259-848, gnl|Mm7|chr14 (46463826-46464415)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

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               tes (0.415628)
               

               
               cbl (0.344392)
               

               
               sin (0.174948)
               

               
               cje (0.165235)
               

               
               cag (0.151194)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.415628)
               

               
               cbl (0.344392)
               

               
               sin (0.174948)
               

               
               cje (0.165235)
               

               
               cag (0.151194)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)

	1-226, gnl\|bosTau2\|chr10 (16319452-16319227)
	1-226, gnl\|dasNov1\|scaffold_28050 (41978-42456)
	1-226, gnl\|echTel1\|scaffold_276800 (42381-41914)
	1-226, gnl\|hg17\|chr14 (20318916-20319434)
	1-226, gnl\|Hg17\|chr14 (20319073-20319305)
	1-226, gnl\|loxAfr1\|scaffold_12868 (18712-19225)
	1-226, gnl\|mm7\|chr14 (46462441-46462938)
	1-226, gnl\|Mm7\|chr14 (46462598-46462813)
	1-226, gnl\|oryCun1\|scaffold_163828 (3021-3512)
	1-226, gnl\|panTro1\|chrUn_random (21660596-21661128)
	1-226, gnl\|rheMac2\|chr7 (83505270-83505809)
	1-226, gnl\|rn3\|chr15 (27131348-27131831)

	259-848, gnl\|bosTau2\|chr10 (16318609-16318021)
	259-848, gnl\|Hg17\|chr14 (20319692-20320275)
	259-848, gnl\|Mm7\|chr14 (46463826-46464415)

	tes (0.415628)
	cbl (0.344392)
	sin (0.174948)
	cje (0.165235)
	cag (0.151194)
	csk (0.140746)
	ssp (0.13552)