Ss1.1-LyN1-MLN01C090068.5
|
GTTCTCCCACCGCCCCCGCCGCGGGTCCCAGCAGCTCCGGCGGCGGGAGGAGCGGCAGCG
GCCAGGCAGCCCAGATTCGCGAAGGCTCTCGGCGCGCCGCGGACCGCAGGCACCCGGCAC
GCGCCCGCGCCCTCGCCACGATGCCCAAGAGGAAGGTCAGCTCCGCCGAGGGGGCGGCAA
AGGAGGAGCCCAAGAGGAGATCGGCGAGGTTGTCAGCTAAACCTGCTCCTGCAAAAGTGG
AAGCGAAGCCAAAAAAGGCGGCAGGAAAGGATAAAGCTTCAGACAAAAAAGTACAAACTA
AAGGGAAAAGGGGAGCAAAGGGAAAACAGGCCGAAGTGACCAAGCAAGAGATGAAAGAAG
ATCTGCCTGCGGAAAACGGAGAAACTAAAAGCGAGGAGAGCCCGGCCTCCGATGAAGCAG
GAGAGAAAGAAGCCAAGTCTGATTAACAGCACACGCCCAGTCCTGCAGTGGTCCCTGTGT
CCCTTCTTGTACAATCCAGAGGAATATTTTTATCAACTATTTTGTAAATGCAAGTTTTTT
AGTAGCTCTAGAAACATTTTTAAGAAGGAGGGAATCCCACCTCATCCCATTTTTTAAGTG
TAAATGCTTTTTTTTAAGAGGTGAAATCATTTGCTGGTTGTTTATTTTTTGGTACAACCA
GAAAATAGTGGGATATTGAATGTGGGAGGCTTTGAATGTCTTGGGTGTCAGCTTAACATT
CCATAGATGGGGAGCTTTTATATCCTGTAATACAAAGCGTACTAAATGGTGATTTGGAGT
CAGTTGTGCATTTAACGTCTTGAACACTCGAAATTACTTCTCTTCCCATGTTGTTTTTGG
TAGAACTGTTTCTAAAGCAGACCAACCTTGACCTTGGCTCTCCTTGTCAGAATTGTGTGC
ACTCTGTAACACCTTTGGTCGTGGTAGTCCAGTTTTCCTAGTAATTTTGTTCATGTGCTG
TGAAAGACTGAACATTTGAGTACGTAGTATATATGATATTAAAATTGTGAATTAGTGGGA
CTTATGATATAACAGCATATCATCATTCGAAGATATTGGCACTTGATATCCTGTTAAGGA
AAATTTGCCTCCAAATTTTAAGCTGTAAAGTCACTGGAATAACTGTTGAGAAAAGAATCA
CAACTATATGATTTTTTTAGATTTTTGGTACGTATGTTAAGAATTGTGTACAAGTTGAAA
TATCTGTGTACTGATCCTCAAAACAACCAATAAAATCTCAGTTACGAAAGAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GTTCTCCCACCGCCCCCGCCGCGGGTCCCAGCAGCTCCGGCGGCGGGAGGAGCGGCAGCG
GCCAGGCAGCCCAGATTCGCGAAGGCTCTCGGCGCGCCGCGGACCGCAGGCACCCGGCAC
GCGCCCGCGCCCTCGCCACGATGCCCAAGAGGAAGGTCAGCTCCGCCGAGGGGGCGGCAA
AGGAGGAGCCCAAGAGGAGATCGGCGAGGTTGTCAGCTAAACCTGCTCCTGCAAAAGTGG
AAGCGAAGCCAAAAAAGGCGGCAGGAAAGGATAAAGCTTCAGACAAAAAAGTACAAACTA
AAGGGAAAAGGGGAGCAAAGGGAAAACAGGCCGAAGTGACCAAGCAAGAGATGAAAGAAG
ATCTGCCTGCGGAAAACGGAGAAACTAAAAGCGAGGAGAGCCCGGCCTCCGATGAAGCAG
GAGAGAAAGAAGCCAAGTCTGATTAACAGCACACGCCCAGTCCTGCAGTGGTCCCTGTGT
CCCTTCTTGTACAATCCAGAGGAATATTTTTATCAACTATTTTGTAAATGCAAGTTTTTT
AGTAGCTCTAGAAACATTTTTAAGAAGGAGGGAATCCCACCTCATCCCATTTTTTAAGTG
TAAATGCTTTTTTTTAAGAGGTGAAATCATTTGCTGGTTGTTTATTTTTTGGTACAACCA
GAAAATAGTGGGATATTGAATGTGGGAGGCTTTGAATGTCTTGGGTGTCAGCTTAACATT
CCATAGATGGGGAGCTTTTATATCCTGTAATACAAAGCGTACTAAATGGTGATTTGGAGT
CAGTTGTGCATTTAACGTCTTGAACACTCGAAATTACTTCTCTTCCCATGTTGTTTTTGG
TAGAACTGTTTCTAAAGCAGACCAACCTTGACCTTGGCTCTCCTTGTCAGAATTGTGTGC
ACTCTGTAACACCTTTGGTCGTGGTAGTCCAGTTTTCCTAGTAATTTTGTTCATGTGCTG
TGAAAGACTGAACATTTGAGTACGTAGTATATATGATATTAAAATTGTGAATTAGTGGGA
CTTATGATATAACAGCATATCATCATTCGAAGATATTGGCACTTGATATCCTGTTAAGGA
AAATTTGCCTCCAAATTTTAAGCTGTAAAGTCACTGGAATAACTGTTGAGAAAAGAATCA
CAACTATATGATTTTTTTAGATTTTTGGTACGTATGTTAAGAATTGTGTACAAGTTGAAA
TATCTGTGTACTGATCCTCAAAACAACCAATAAAATCTCAGTTACGAAAGAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
10-1273, gnl|bosTau2|chr18 (30167689-30168938) |
|
10-1273, gnl|Hg17|chr15 (60441947-60440704) |
|
10-1273, gnl|Mm7|chr12 (74111301-74110093) |
| |
|
106-361, gnl|bosTau2|chr11 (7932087-7931843) |
|
106-361, gnl|Hg17|chr2 (97902194-97902484) |
|
106-361, gnl|Mm7|chr11 (104680635-104680350) |
| |
|
394-1030, gnl|bosTau2|chr11 (7931848-7931224) |
|
394-1030, gnl|Hg17|chr2 (97902479-97903150) |
|
394-1030, gnl|Mm7|chr11 (104680355-104679736) |
| |
|
531-993, gnl|bosTau2|chr10 (21313517-21313054) |
|
531-993, gnl|Hg17|chr15 (36837098-36836592) |
|
531-993, gnl|Mm7|chr16 (96458787-96458347) |
| |
|
1053-1257, gnl|bosTau2|chr11 (7931227-7931026) |
|
1053-1257, gnl|Hg17|chr2 (97903122-97903338) |
|
1053-1257, gnl|Mm7|chr11 (104679746-104679498) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
10-1273, gnl|bosTau2|chr18 (30167689-30168938) |
|
10-1273, gnl|Hg17|chr15 (60441947-60440704) |
|
10-1273, gnl|Mm7|chr12 (74111301-74110093) |
| |
|
106-361, gnl|bosTau2|chr11 (7932087-7931843) |
|
106-361, gnl|Hg17|chr2 (97902194-97902484) |
|
106-361, gnl|Mm7|chr11 (104680635-104680350) |
| |
|
394-1030, gnl|bosTau2|chr11 (7931848-7931224) |
|
394-1030, gnl|Hg17|chr2 (97902479-97903150) |
|
394-1030, gnl|Mm7|chr11 (104680355-104679736) |
| |
|
531-993, gnl|bosTau2|chr10 (21313517-21313054) |
|
531-993, gnl|Hg17|chr15 (36837098-36836592) |
|
531-993, gnl|Mm7|chr16 (96458787-96458347) |
| |
|
1053-1257, gnl|bosTau2|chr11 (7931227-7931026) |
|
1053-1257, gnl|Hg17|chr2 (97903122-97903338) |
|
1053-1257, gnl|Mm7|chr11 (104679746-104679498) |
|
thg (4.1841) |
|
mgp (3.46021) |
|
lin (2.62085) |
|
lyg (2.12964) |
|
ova (2.06612) |
|
ret (1.80227) |
|
cbe (1.67464) |
|
tra (1.4771) |
|
gul (1.42071) |
|
aor (1.36692) |
|
ski (1.32062) |
|
kid (1.29735) |
|
spl (1.28866) |
|
sug (1.27291) |
|
liv (1.17027) |
|
mga (1.12144) |
|
tes (1.03907) |
|
rec (1.03842) |
|
spc (1.02029) |
|
bla (0.87043) |
|
amn (0.835422) |
|
eje (0.79067) |
|
elu (0.770713) |
|
bfe (0.749288) |
|
sag (0.730861) |
|
sin (0.69979) |
|
mcp (0.682594) |
|
fco (0.628832) |
|
nbm (0.595948) |
|
lnt (0.569233) |
|
sto (0.539471) |
|
fty (0.527519) |
|
cut (0.509771) |
|
cki (0.495704) |
|
med (0.465008) |
|
isp (0.451128) |
|
cty (0.41632) |
|
che (0.408942) |
|
fli (0.405762) |
|
col (0.390016) |
|
pgl (0.35545) |
|
vin (0.332557) |
|
nco (0.323468) |
|
sme (0.305437) |
|
cte (0.29274) |
|
csk (0.281492) |
|
nca (0.273748) |
|
fce (0.271592) |
|
ute (0.265569) |
|
ese (0.253004) |
|
eep (0.245128) |
|
cly (0.241284) |
|
eru (0.240096) |
|
clu (0.239292) |
|
ebs (0.236602) |
|
pan (0.23596) |
|
ecc (0.23007) |
|
ece (0.229305) |
|
fcc (0.197785) |
|
nlu (0.191681) |
|
nep (0.183925) |
|
mgm (0.180343) |
|
ill (0.175593) |
|
duo (0.172801) |
|
eye (0.170503) |
|
csp (0.161186) |
|
tbr (0.154178) |
|
cag (0.151194) |
|
pty (0.142714) |
|
cov (0.132153) |
|
jca (0.11396) |
|
jej (0.0989218) |
|
thg (4.1841) |
|
mgp (3.46021) |
|
lin (2.62085) |
|
lyg (2.12964) |
|
ova (2.06612) |
|
ret (1.80227) |
|
cbe (1.67464) |
|
tra (1.4771) |
|
gul (1.42071) |
|
aor (1.36692) |
|
ski (1.32062) |
|
kid (1.29735) |
|
spl (1.28866) |
|
sug (1.27291) |
|
liv (1.17027) |
|
mga (1.12144) |
|
tes (1.03907) |
|
rec (1.03842) |
|
spc (1.02029) |
|
bla (0.87043) |
|
amn (0.835422) |
|
eje (0.79067) |
|
elu (0.770713) |
|
bfe (0.749288) |
|
sag (0.730861) |
|
sin (0.69979) |
|
mcp (0.682594) |
|
fco (0.628832) |
|
nbm (0.595948) |
|
lnt (0.569233) |
|
sto (0.539471) |
|
fty (0.527519) |
|
cut (0.509771) |
|
cki (0.495704) |
|
med (0.465008) |
|
isp (0.451128) |
|
cty (0.41632) |
|
che (0.408942) |
|
fli (0.405762) |
|
col (0.390016) |
|
pgl (0.35545) |
|
vin (0.332557) |
|
nco (0.323468) |
|
sme (0.305437) |
|
cte (0.29274) |
|
csk (0.281492) |
|
nca (0.273748) |
|
fce (0.271592) |
|
ute (0.265569) |
|
ese (0.253004) |
|
eep (0.245128) |
|
cly (0.241284) |
|
eru (0.240096) |
|
clu (0.239292) |
|
ebs (0.236602) |
|
pan (0.23596) |
|
ecc (0.23007) |
|
ece (0.229305) |
|
fcc (0.197785) |
|
nlu (0.191681) |
|
nep (0.183925) |
|
mgm (0.180343) |
|
ill (0.175593) |
|
duo (0.172801) |
|
eye (0.170503) |
|
csp (0.161186) |
|
tbr (0.154178) |
|
cag (0.151194) |
|
pty (0.142714) |
|
cov (0.132153) |
|
jca (0.11396) |
|
jej (0.0989218) |
