Non-Coding RNA Search

Ss1.1-LyN1-MLN01C100095.5

Sequence:


               
               CAGAGAGGCCGGAAGCTGCGCCGGCTTTTCTCTCCTCTTCGCGAGAGGTTCTCATCAGCC
TTGAGCTCCGGCCCGTATCCCGTTGCCTCACGTCGCTTGCGCTATGGCTCTCAGCGATGC
CGACGTGCAGAAGCAGATTAAGCACATGATGGCTTTTATTGAACAAGAAGCCAATGAGAA
AGCAGAAGAAATAGATGCGAAGGCAGAAGAGGAGTTCAACATTGAGAAAGGTCGTCTTGT
GCAAACCCAAAGACTGAAGATTATGGAATATTACGAGAAGAAGGAAAAGCAGATTGAACA
GCAGAAGAAAATTCAGATGTCTAATTTGATGAATCAAGCGAGGCTCAAAGTCCTCAGAGC
CAGAGATGACCTCATCACAGACCTGCTAAATGAAGCGAAACAGAGACTAGGCAAAGTGGT
AAAAGATACAACCAGGTACCAAGTGCTGTTGGATGGACTGGTCCTCCAGGGTTTGTACCA
GTTGTTGGAGCCCCGAATGATCGTTCGATGCAGGAAACAAGATTTCCCTCTGGTAAAGGC
TGCCGTGCAGAAAGCAATCCCTGTTTACAAAATCGCCACCAAAAGAGATGTTGATGTCCA
GATTGATCAGGAGGCCTACCTGCCTGAGGAAATAGCTGGTGGGGTTGAGATCTATAATGG
GGATCGCAAAATCAAGGTCTCCAATACCTTAGAGAGCCGGCTGGACCTCATAGCTCAACA
GATGATGCCAGAGGTGCGGGGAGCCTTGTTTGGTGCAAATGCCAACAGGAAGTTTTTGGA
CTAAGCCTGGGAGGTGGCGTTCATCCCCTGCTCTCCTCCTGGGACGTGACGTTCTGACAT
TTGAAGACACCCGCGTAGCCTCCTCTTCACTGTTTATATTCTGTGTTGATCAGTGGGTAC
CCTTCTGTAGCTAACACCCCTGGCTGATGGTAAATGATGGCAGAGAGATTTATTTAACAT
GATAGGAAACATTTTTCTAGCTTATCTGAAAGTAACCCAGCTTCCAGCTGGTTCCAAAGC
ATGAAGGTCCCCAAGTCTTCTGCCCTTCTCTGGCACAGCGTCCAGCCAAGAGGTCTGGTC
TCTGCTCTTTGGGCTTCAAGTGCATGTGGAGCCACATTCCTTCTAGCAGTAGCAGCTTAA
CTGTTAACTATTTGGGCCTAGATGAGTATACTTTATTTATTAAAACAGAATGTGTACGCG
GATGCTGTTGTAATTTATAGGCAAAGCACTGTCAATAGTGGTTTGAGAGGGTGAGTTACC
ACTGAGGGATCTGGAAAAGCAGCAGTTCCTTCCCAGTCCTGTCTGTCTGTAATCCTGTCT
GGTATGTAATTTACCTGTTGCATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGAGAGGCCGGAAGCTGCGCCGGCTTTTCTCTCCTCTTCGCGAGAGGTTCTCATCAGCC
TTGAGCTCCGGCCCGTATCCCGTTGCCTCACGTCGCTTGCGCTATGGCTCTCAGCGATGC
CGACGTGCAGAAGCAGATTAAGCACATGATGGCTTTTATTGAACAAGAAGCCAATGAGAA
AGCAGAAGAAATAGATGCGAAGGCAGAAGAGGAGTTCAACATTGAGAAAGGTCGTCTTGT
GCAAACCCAAAGACTGAAGATTATGGAATATTACGAGAAGAAGGAAAAGCAGATTGAACA
GCAGAAGAAAATTCAGATGTCTAATTTGATGAATCAAGCGAGGCTCAAAGTCCTCAGAGC
CAGAGATGACCTCATCACAGACCTGCTAAATGAAGCGAAACAGAGACTAGGCAAAGTGGT
AAAAGATACAACCAGGTACCAAGTGCTGTTGGATGGACTGGTCCTCCAGGGTTTGTACCA
GTTGTTGGAGCCCCGAATGATCGTTCGATGCAGGAAACAAGATTTCCCTCTGGTAAAGGC
TGCCGTGCAGAAAGCAATCCCTGTTTACAAAATCGCCACCAAAAGAGATGTTGATGTCCA
GATTGATCAGGAGGCCTACCTGCCTGAGGAAATAGCTGGTGGGGTTGAGATCTATAATGG
GGATCGCAAAATCAAGGTCTCCAATACCTTAGAGAGCCGGCTGGACCTCATAGCTCAACA
GATGATGCCAGAGGTGCGGGGAGCCTTGTTTGGTGCAAATGCCAACAGGAAGTTTTTGGA
CTAAGCCTGGGAGGTGGCGTTCATCCCCTGCTCTCCTCCTGGGACGTGACGTTCTGACAT
TTGAAGACACCCGCGTAGCCTCCTCTTCACTGTTTATATTCTGTGTTGATCAGTGGGTAC
CCTTCTGTAGCTAACACCCCTGGCTGATGGTAAATGATGGCAGAGAGATTTATTTAACAT
GATAGGAAACATTTTTCTAGCTTATCTGAAAGTAACCCAGCTTCCAGCTGGTTCCAAAGC
ATGAAGGTCCCCAAGTCTTCTGCCCTTCTCTGGCACAGCGTCCAGCCAAGAGGTCTGGTC
TCTGCTCTTTGGGCTTCAAGTGCATGTGGAGCCACATTCCTTCTAGCAGTAGCAGCTTAA
CTGTTAACTATTTGGGCCTAGATGAGTATACTTTATTTATTAAAACAGAATGTGTACGCG
GATGCTGTTGTAATTTATAGGCAAAGCACTGTCAATAGTGGTTTGAGAGGGTGAGTTACC
ACTGAGGGATCTGGAAAAGCAGCAGTTCCTTCCCAGTCCTGTCTGTCTGTAATCCTGTCT
GGTATGTAATTTACCTGTTGCATC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               VATE_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               VATE_BOVIN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               101-259, + strand, RNAz p=0.824038

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               101-259, + strand, RNAz p=0.824038

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_080653, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_080653, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               101-788, gnl|bosTau2|chr11 (23129761-23130448)
               

               
               101-788, gnl|Hg17|chr2 (46651504-46650817)
               

               
               101-788, gnl|Mm7|chr17 (85247413-85246726)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               101-788, gnl|bosTau2|chr11 (23129761-23130448)
               

               
               101-788, gnl|Hg17|chr2 (46651504-46650817)
               

               
               101-788, gnl|Mm7|chr17 (85247413-85246726)

Expressed library(ies): 51 entry(ies)

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Expressed library(ies): 51 entry(ies)

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               fhi (0.847889)
               

               
               cbl (0.803582)
               

               
               fcc (0.593354)
               

               
               pgl (0.592417)
               

               
               fce (0.543183)
               

               
               nco (0.485201)
               

               
               cst (0.420109)
               

               
               ssp (0.406559)
               

               
               elu (0.385356)
               

               
               eru (0.360144)
               

               
               ill (0.351185)
               

               
               fbs (0.350693)
               

               
               mcp (0.341297)
               

               
               cty (0.31224)
               

               
               fat (0.294855)
               

               
               spl (0.286369)
               

               
               hyp (0.285673)
               

               
               nmm (0.265604)
               

               
               ese (0.253004)
               

               
               clu (0.239292)
               

               
               cbe (0.239234)
               

               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               tes (0.207814)
               

               
               eje (0.197668)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               cje (0.165235)
               

               
               cag (0.151194)
               

               
               lun (0.150489)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               sug (0.127291)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

Expressed library(ies): 51 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.847889)
               

               
               cbl (0.803582)
               

               
               fcc (0.593354)
               

               
               pgl (0.592417)
               

               
               fce (0.543183)
               

               
               nco (0.485201)
               

               
               cst (0.420109)
               

               
               ssp (0.406559)
               

               
               elu (0.385356)
               

               
               eru (0.360144)
               

               
               ill (0.351185)
               

               
               fbs (0.350693)
               

               
               mcp (0.341297)
               

               
               cty (0.31224)
               

               
               fat (0.294855)
               

               
               spl (0.286369)
               

               
               hyp (0.285673)
               

               
               nmm (0.265604)
               

               
               ese (0.253004)
               

               
               clu (0.239292)
               

               
               cbe (0.239234)
               

               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               tes (0.207814)
               

               
               eje (0.197668)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               cje (0.165235)
               

               
               cag (0.151194)
               

               
               lun (0.150489)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               sug (0.127291)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

	101-788, gnl\|bosTau2\|chr11 (23129761-23130448)
	101-788, gnl\|Hg17\|chr2 (46651504-46650817)
	101-788, gnl\|Mm7\|chr17 (85247413-85246726)

	fhi (0.847889)
	cbl (0.803582)
	fcc (0.593354)
	pgl (0.592417)
	fce (0.543183)
	nco (0.485201)
	cst (0.420109)
	ssp (0.406559)
	elu (0.385356)
	eru (0.360144)
	ill (0.351185)
	fbs (0.350693)
	mcp (0.341297)
	cty (0.31224)
	fat (0.294855)
	spl (0.286369)
	hyp (0.285673)
	nmm (0.265604)
	ese (0.253004)
	clu (0.239292)
	cbe (0.239234)
	ebs (0.236602)
	ece (0.229305)
	nms (0.213858)
	tes (0.207814)
	eje (0.197668)
	col (0.195008)
	nlu (0.191681)
	sto (0.179824)
	fty (0.17584)
	sin (0.174948)
	duo (0.172801)
	eye (0.170503)
	nje (0.16592)
	cki (0.165235)
	cje (0.165235)
	cag (0.151194)
	lun (0.150489)
	lin (0.145603)
	lnt (0.142308)
	ste (0.135208)
	lyg (0.133103)
	ute (0.132784)
	cov (0.132153)
	sug (0.127291)
	eep (0.122564)
	med (0.116252)
	ecc (0.115035)
	jca (0.11396)
	spc (0.113366)
	ldo (0.0970026)