Ss1.1-LyN1-MLN01C110066.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGGCATGTCACCTGGGAGCCGGATGCCCATGGCTGGCTTGCAGGTGGGACCCCCTGCTG GTTCCCCATTTGGTACAGCTGCTCCACTTCGACCTGGCATGCCACCCACCATGATGGATC CATTCCGAAAACGCCTGCTTGTGCCCCAGGCCCAGCCCCCGATGCCTGCCCAGCGCCGGG GGTTAAAGAGGAGGAAGATGGCAGATAAAGTTCTACCTCAGCGAATTCGGGAGCTTGTCC CAGAGTCTCAGGCGTACATGGATCTCTTGGCTTTTGAGCGGAAGCTGGACCAGACCATTG CTCGAAAGCGGATGGAGATCCAGGAGGCCATCAAAAAGCCTCTGACGCAAAAACGAAAGC TGCGGATCTATATTTCCAATACGTTCAGTCCCAGCAAGGCAGAAGGTGACAGTGCAGGAA GCGCAGGGACTCCTGGGGGGACCCCAGCAGGGGACAAGGTGGCTTCCTGGGAACTCCGAG TAGAGGGAAAACTGCTGGATGATCCTAGCAAACAGAAGAGGAAGTTTTCTTCATTCTTTA AGAGCCTTGTCATTGAGCTGGACAAGGAACTGTACGGGCCTGACAACCACCTAGTGGAGT GGCACCGGATGCCCACCACCCAGGAGACAGATGGCTTCCAAGTGAAACGGCCTGGAGACC TCAATGTCAAGTGCACCCTCCTGCTCATGCTGGATCATCAGCCTCCCCAGTACAAGTTGG ACCCCCGACTGGCGAGGCTGCTGGGGGTGCACACACAGACGAGGGCTGCCATCATGCAGG CCCTGTGGCTCTATATCAAACACAATCAGCTGCAGGACGGCCACGAGCGCGAGTACATCA ACTGCAACCGCTACTTCCGCCAGATCTTCAGTTGTGGCCGACTCCGTTTCTCTGAGATTC CCATGAAGCTGGCTGGGCTGCTGCAGCATCCAGACCCCATTGTCATCAATCATGTCATTA GCGTGGACCCGAACGACCAGAAGAAGACCGCCTGTTATGACATTGACGTGGAGGTGGATG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGGCATGTCACCTGGGAGCCGGATGCCCATGGCTGGCTTGCAGGTGGGACCCCCTGCTG GTTCCCCATTTGGTACAGCTGCTCCACTTCGACCTGGCATGCCACCCACCATGATGGATC CATTCCGAAAACGCCTGCTTGTGCCCCAGGCCCAGCCCCCGATGCCTGCCCAGCGCCGGG GGTTAAAGAGGAGGAAGATGGCAGATAAAGTTCTACCTCAGCGAATTCGGGAGCTTGTCC CAGAGTCTCAGGCGTACATGGATCTCTTGGCTTTTGAGCGGAAGCTGGACCAGACCATTG CTCGAAAGCGGATGGAGATCCAGGAGGCCATCAAAAAGCCTCTGACGCAAAAACGAAAGC TGCGGATCTATATTTCCAATACGTTCAGTCCCAGCAAGGCAGAAGGTGACAGTGCAGGAA GCGCAGGGACTCCTGGGGGGACCCCAGCAGGGGACAAGGTGGCTTCCTGGGAACTCCGAG TAGAGGGAAAACTGCTGGATGATCCTAGCAAACAGAAGAGGAAGTTTTCTTCATTCTTTA AGAGCCTTGTCATTGAGCTGGACAAGGAACTGTACGGGCCTGACAACCACCTAGTGGAGT GGCACCGGATGCCCACCACCCAGGAGACAGATGGCTTCCAAGTGAAACGGCCTGGAGACC TCAATGTCAAGTGCACCCTCCTGCTCATGCTGGATCATCAGCCTCCCCAGTACAAGTTGG ACCCCCGACTGGCGAGGCTGCTGGGGGTGCACACACAGACGAGGGCTGCCATCATGCAGG CCCTGTGGCTCTATATCAAACACAATCAGCTGCAGGACGGCCACGAGCGCGAGTACATCA ACTGCAACCGCTACTTCCGCCAGATCTTCAGTTGTGGCCGACTCCGTTTCTCTGAGATTC CCATGAAGCTGGCTGGGCTGCTGCAGCATCCAGACCCCATTGTCATCAATCATGTCATTA GCGTGGACCCGAACGACCAGAAGAAGACCGCCTGTTATGACATTGACGTGGAGGTGGATG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 1-120, - strand, RNAz p=0.554263 | |
| 225-345, + strand, RNAz p=0.904303 | |
| 386-503, + strand, RNAz p=0.91331 | |
| 389-503, - strand, RNAz p=0.996162 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-120, - strand, RNAz p=0.554263 | |
| 225-345, + strand, RNAz p=0.904303 | |
| 386-503, + strand, RNAz p=0.91331 | |
| 389-503, - strand, RNAz p=0.996162 |
| Aligned organism(s): 60 entry(ies) | More info |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
| 1-183, gnl|bosTau2|chr19 (40510869-40510687) | |
| 1-183, gnl|Hg17|chr17 (59268713-59268531) | |
| 1-183, gnl|Mm7|chr11 (106376555-106376373) | |
| 225-345, gnl|bosTau2|chr4 (64354329-64354449) | |
| 225-345, gnl|canFam2|chr16 (18230958-18231109) | |
| 225-345, gnl|danRer3|chr7 (36065251-36065101) | |
| 225-345, gnl|dasNov1|scaffold_42660 (6445-6591) | |
| 225-345, gnl|echTel1|scaffold_267036 (10066-10216) | |
| 225-345, gnl|fr1|chrUn (3404113-3403986) | |
| 225-345, gnl|galGal2|chrUn (117236723-117236882) | |
| 225-345, gnl|hg17|chr7 (150377454-150377604) | |
| 225-345, gnl|Hg17|chr7 (150377577-150377457) | |
| 225-345, gnl|loxAfr1|scaffold_19096 (30748-30895) | |
| 225-345, gnl|mm7|chr5 (23636444-23636593) | |
| 225-345, gnl|Mm7|chr5 (23636567-23636447) | |
| 225-345, gnl|monDom2|scaffold_7 (11459174-11459318) | |
| 225-345, gnl|oryCun1|scaffold_208276 (109259-109411) | |
| 225-345, gnl|panTro1|chr6_random (16547278-16547128) | |
| 225-345, gnl|rheMac2|chr3 (188192020-188192170) | |
| 225-345, gnl|rn3|chr4 (5956307-5956158) | |
| 225-345, gnl|tetNig1|chr6 (4853287-4853151) | |
| 225-345, gnl|xenTro1|scaffold_1115 (228012-228156) | |
| 347-503, gnl|bosTau2|chr19 (40509440-40509284) | |
| 347-503, gnl|canFam2|chr9 (14916713-14916836) | |
| 347-503, gnl|danRer3|chr7 (36065695-36065611) | |
| 347-503, gnl|dasNov1|scaffold_64051 (7983-7860) | |
| 347-503, gnl|echTel1|scaffold_267036 (9830-9914) | |
| 347-503, gnl|fr1|chrUn (38979497-38979417) | |
| 347-503, gnl|galGal2|chrUn (6371951-6372041) | |
| 347-503, gnl|hg17|chr17 (59266493-59266616) | |
| 347-503, gnl|Hg17|chr17 (59266660-59266504) | |
| 347-503, gnl|loxAfr1|scaffold_19096 (30505-30589) | |
| 347-503, gnl|mm7|chr11 (106375567-106375690) | |
| 347-503, gnl|Mm7|chr11 (106375734-106375578) | |
| 347-503, gnl|monDom2|scaffold_18 (35670669-35670534) | |
| 347-503, gnl|oryCun1|scaffold_215464 (54969-55092) | |
| 347-503, gnl|panTro1|chr19 (45869387-45869264) | |
| 347-503, gnl|rheMac2|chr16 (59348960-59349083) | |
| 347-503, gnl|rn3|chr10 (95674631-95674754) | |
| 347-503, gnl|tetNig1|chr2 (5650454-5650261) | |
| 347-503, gnl|xenTro1|scaffold_58 (614470-614406) | |
| 699-863, gnl|bosTau2|chr19 (40508393-40508229) | |
| 699-863, gnl|canFam2|chr9 (14915690-14915866) | |
| 699-863, gnl|danRer3|chr7 (36071890-36071713) | |
| 699-863, gnl|dasNov1|scaffold_64051 (9045-8869) | |
| 699-863, gnl|echTel1|scaffold_313474 (47983-47807) | |
| 699-863, gnl|fr1|chrUn (38980751-38980575) | |
| 699-863, gnl|galGal2|chr27 (214052-214228) | |
| 699-863, gnl|hg17|chr17 (59265248-59265424) | |
| 699-863, gnl|Hg17|chr17 (59265423-59265259) | |
| 699-863, gnl|loxAfr1|scaffold_19096 (29469-29635) | |
| 699-863, gnl|mm7|chr11 (106374214-106374389) | |
| 699-863, gnl|Mm7|chr11 (106374389-106374224) | |
| 699-863, gnl|monDom2|scaffold_18 (35671465-35671292) | |
| 699-863, gnl|oryCun1|scaffold_215464 (54024-54200) | |
| 699-863, gnl|panTro1|chr19 (45870631-45870455) | |
| 699-863, gnl|rheMac2|chr16 (59347709-59347885) | |
| 699-863, gnl|rn3|chr10 (95673394-95673569) | |
| 699-863, gnl|tetNig1|chr2 (5651618-5651442) | |
| 699-863, gnl|xenTro1|scaffold_58 (615579-615408) |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-183, gnl|bosTau2|chr19 (40510869-40510687) | |
| 1-183, gnl|Hg17|chr17 (59268713-59268531) | |
| 1-183, gnl|Mm7|chr11 (106376555-106376373) | |
| 225-345, gnl|bosTau2|chr4 (64354329-64354449) | |
| 225-345, gnl|canFam2|chr16 (18230958-18231109) | |
| 225-345, gnl|danRer3|chr7 (36065251-36065101) | |
| 225-345, gnl|dasNov1|scaffold_42660 (6445-6591) | |
| 225-345, gnl|echTel1|scaffold_267036 (10066-10216) | |
| 225-345, gnl|fr1|chrUn (3404113-3403986) | |
| 225-345, gnl|galGal2|chrUn (117236723-117236882) | |
| 225-345, gnl|hg17|chr7 (150377454-150377604) | |
| 225-345, gnl|Hg17|chr7 (150377577-150377457) | |
| 225-345, gnl|loxAfr1|scaffold_19096 (30748-30895) | |
| 225-345, gnl|mm7|chr5 (23636444-23636593) | |
| 225-345, gnl|Mm7|chr5 (23636567-23636447) | |
| 225-345, gnl|monDom2|scaffold_7 (11459174-11459318) | |
| 225-345, gnl|oryCun1|scaffold_208276 (109259-109411) | |
| 225-345, gnl|panTro1|chr6_random (16547278-16547128) | |
| 225-345, gnl|rheMac2|chr3 (188192020-188192170) | |
| 225-345, gnl|rn3|chr4 (5956307-5956158) | |
| 225-345, gnl|tetNig1|chr6 (4853287-4853151) | |
| 225-345, gnl|xenTro1|scaffold_1115 (228012-228156) | |
| 347-503, gnl|bosTau2|chr19 (40509440-40509284) | |
| 347-503, gnl|canFam2|chr9 (14916713-14916836) | |
| 347-503, gnl|danRer3|chr7 (36065695-36065611) | |
| 347-503, gnl|dasNov1|scaffold_64051 (7983-7860) | |
| 347-503, gnl|echTel1|scaffold_267036 (9830-9914) | |
| 347-503, gnl|fr1|chrUn (38979497-38979417) | |
| 347-503, gnl|galGal2|chrUn (6371951-6372041) | |
| 347-503, gnl|hg17|chr17 (59266493-59266616) | |
| 347-503, gnl|Hg17|chr17 (59266660-59266504) | |
| 347-503, gnl|loxAfr1|scaffold_19096 (30505-30589) | |
| 347-503, gnl|mm7|chr11 (106375567-106375690) | |
| 347-503, gnl|Mm7|chr11 (106375734-106375578) | |
| 347-503, gnl|monDom2|scaffold_18 (35670669-35670534) | |
| 347-503, gnl|oryCun1|scaffold_215464 (54969-55092) | |
| 347-503, gnl|panTro1|chr19 (45869387-45869264) | |
| 347-503, gnl|rheMac2|chr16 (59348960-59349083) | |
| 347-503, gnl|rn3|chr10 (95674631-95674754) | |
| 347-503, gnl|tetNig1|chr2 (5650454-5650261) | |
| 347-503, gnl|xenTro1|scaffold_58 (614470-614406) | |
| 699-863, gnl|bosTau2|chr19 (40508393-40508229) | |
| 699-863, gnl|canFam2|chr9 (14915690-14915866) | |
| 699-863, gnl|danRer3|chr7 (36071890-36071713) | |
| 699-863, gnl|dasNov1|scaffold_64051 (9045-8869) | |
| 699-863, gnl|echTel1|scaffold_313474 (47983-47807) | |
| 699-863, gnl|fr1|chrUn (38980751-38980575) | |
| 699-863, gnl|galGal2|chr27 (214052-214228) | |
| 699-863, gnl|hg17|chr17 (59265248-59265424) | |
| 699-863, gnl|Hg17|chr17 (59265423-59265259) | |
| 699-863, gnl|loxAfr1|scaffold_19096 (29469-29635) | |
| 699-863, gnl|mm7|chr11 (106374214-106374389) | |
| 699-863, gnl|Mm7|chr11 (106374389-106374224) | |
| 699-863, gnl|monDom2|scaffold_18 (35671465-35671292) | |
| 699-863, gnl|oryCun1|scaffold_215464 (54024-54200) | |
| 699-863, gnl|panTro1|chr19 (45870631-45870455) | |
| 699-863, gnl|rheMac2|chr16 (59347709-59347885) | |
| 699-863, gnl|rn3|chr10 (95673394-95673569) | |
| 699-863, gnl|tetNig1|chr2 (5651618-5651442) | |
| 699-863, gnl|xenTro1|scaffold_58 (615579-615408) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cly (0.120642) | |
| eru (0.120048) | |
| cty (0.10408) |