Non-Coding RNA Search

Ss1.1-LyN1-MLN01D010002.5.5

Sequence:


               
               CATCAACTACTACCTAATCATGTGCTTCAGAAAAAGAAAAAGCATTCAACAGATGGTGTC
AGGTTGACACCTCTGAATGACAGCAGCCTCGACTTGTCTATGGACAGTGATAACAGCATG
TCTGTGCCTTCACCTACTAGTGCTATGAAGACCAGTCCATTGAACAGTTCTGGCAGCTCT
CAGGGCAGAAACAGTCCTGCTCCAGCTGTAACAGCAGCATCTGTGACCAACATACAGGCT
ACTGAAGTTTCTGTGCCACAAGTAAATTCCAGTGAAAGCTCAGGGGGTACATCGAGCGAA
AGCATTCCTCAAACTGCCACACAACCAGCCATTTCACCACCACCAAAGCCTACTGTTTCC
AGAGTTGTTTCTTCAACACGTTTGGTAAACCCGCCACCAAGACCTTCAGGAAATGCAGCA
ACAAAGATACCTAATCCTATAGTCGGAGTCAAGAGAACATCCTCTCCTCATAAAGAGGAG
AGTCCCAAGAAAACCAGAACAGAAGAGGATGAAACAAGTGAAGATGCTAACTGTCTTGCT
TTGAGTGGACATGATAAAACAGAAGCAAAGGAACAACTTGATACAGAGACAAGTACAACT
CAATCAGAAACCATTCAGACAGCGGCTTCTCTGTTGGCTTCTCAGAAAACATCCAGTACA
GACCTTTCTGATATCCCTGCTCTCCCTGCAAATCCTATTCCTGTTATCAAGAATTCAATA
AAACTGAGATTGAATCGGTAAAAACAACCTCAGGGGTCCATAAACAATATCTGCCAACTC
AACCTGTTGTCTTCAAATGCTGAAAAAGGAGGATGGAGGGTACAAGACTAGACATGACTG
AAATGGATTAGGTTTTTTGGTGACCTCCCTTACTGGGCTAATCAGCACTTGATCGGAAGT
CCAGGTTAGTATGTGAAGCCAGGAGTACTATTATTATTGTGTTAGCAACAGTTGCATTAA
CTATTTCAAAAAATTACTGCCTTTAAAAAAAACAAAAAAACAAAAAAAAAAACCTCAAGC
TATATTTGTATCCGTAATTGACATCTGGACTGGATTTATGTTTGATGCATTGTTTGGAAA
ATTTGCAATACAAACTGGCATAAGAATTCCTTATTCTGATGATGCACTTTTATGTATTTT
TTTATTAGAAAGTAGAACTAATTTTAGATTTTCAGCTTGATGGATTTTCATTTTTTTCCT
GAAGAATTTCCTTTACCATTAGTCTTCAAATTGGATGCCATTGTGTGGCGGTGTACTGTT
ACACTTCAGAGGAGGGGTAGGAGTACATCTAGTTCAGTCCCTGCCAGGTAGCTGTAACCT
TCACAAATGAAATGTCAACTCTAGGGTATATATTTGACATTGAAAGAATAATTAGGAAAT
ACTTTGTTTTGATGGGGTCATGATTAAGAAATGATATATTGGTTTTATTTATAGAATTGT
TTAGAGTGCATACAGATCAGCGATCAGCCAGCAAATATTTTTCTTTGAGCTTGTTTAAGC
TCCATATTCTTTTGCCTTCAATCTGTTGTCTTTTAAACAAACGAAGCTTTTTGCTCCCTC
CCCCTTCTTGTTCTTTTCCCCTCTGCTTATGTGCATACGGTAGGACTTATTTCATCAAAG
ACAAAATGCCAGTATTTTCTTAAGCCATGATGTGAAACCAGTGACCCTGTGGCCACATGG
CACAGAACACTAAATTTTGGTCCCATGGCTGTAACTTTAGGGTGACTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATCAACTACTACCTAATCATGTGCTTCAGAAAAAGAAAAAGCATTCAACAGATGGTGTC
AGGTTGACACCTCTGAATGACAGCAGCCTCGACTTGTCTATGGACAGTGATAACAGCATG
TCTGTGCCTTCACCTACTAGTGCTATGAAGACCAGTCCATTGAACAGTTCTGGCAGCTCT
CAGGGCAGAAACAGTCCTGCTCCAGCTGTAACAGCAGCATCTGTGACCAACATACAGGCT
ACTGAAGTTTCTGTGCCACAAGTAAATTCCAGTGAAAGCTCAGGGGGTACATCGAGCGAA
AGCATTCCTCAAACTGCCACACAACCAGCCATTTCACCACCACCAAAGCCTACTGTTTCC
AGAGTTGTTTCTTCAACACGTTTGGTAAACCCGCCACCAAGACCTTCAGGAAATGCAGCA
ACAAAGATACCTAATCCTATAGTCGGAGTCAAGAGAACATCCTCTCCTCATAAAGAGGAG
AGTCCCAAGAAAACCAGAACAGAAGAGGATGAAACAAGTGAAGATGCTAACTGTCTTGCT
TTGAGTGGACATGATAAAACAGAAGCAAAGGAACAACTTGATACAGAGACAAGTACAACT
CAATCAGAAACCATTCAGACAGCGGCTTCTCTGTTGGCTTCTCAGAAAACATCCAGTACA
GACCTTTCTGATATCCCTGCTCTCCCTGCAAATCCTATTCCTGTTATCAAGAATTCAATA
AAACTGAGATTGAATCGGTAAAAACAACCTCAGGGGTCCATAAACAATATCTGCCAACTC
AACCTGTTGTCTTCAAATGCTGAAAAAGGAGGATGGAGGGTACAAGACTAGACATGACTG
AAATGGATTAGGTTTTTTGGTGACCTCCCTTACTGGGCTAATCAGCACTTGATCGGAAGT
CCAGGTTAGTATGTGAAGCCAGGAGTACTATTATTATTGTGTTAGCAACAGTTGCATTAA
CTATTTCAAAAAATTACTGCCTTTAAAAAAAACAAAAAAACAAAAAAAAAAACCTCAAGC
TATATTTGTATCCGTAATTGACATCTGGACTGGATTTATGTTTGATGCATTGTTTGGAAA
ATTTGCAATACAAACTGGCATAAGAATTCCTTATTCTGATGATGCACTTTTATGTATTTT
TTTATTAGAAAGTAGAACTAATTTTAGATTTTCAGCTTGATGGATTTTCATTTTTTTCCT
GAAGAATTTCCTTTACCATTAGTCTTCAAATTGGATGCCATTGTGTGGCGGTGTACTGTT
ACACTTCAGAGGAGGGGTAGGAGTACATCTAGTTCAGTCCCTGCCAGGTAGCTGTAACCT
TCACAAATGAAATGTCAACTCTAGGGTATATATTTGACATTGAAAGAATAATTAGGAAAT
ACTTTGTTTTGATGGGGTCATGATTAAGAAATGATATATTGGTTTTATTTATAGAATTGT
TTAGAGTGCATACAGATCAGCGATCAGCCAGCAAATATTTTTCTTTGAGCTTGTTTAAGC
TCCATATTCTTTTGCCTTCAATCTGTTGTCTTTTAAACAAACGAAGCTTTTTGCTCCCTC
CCCCTTCTTGTTCTTTTCCCCTCTGCTTATGTGCATACGGTAGGACTTATTTCATCAAAG
ACAAAATGCCAGTATTTTCTTAAGCCATGATGTGAAACCAGTGACCCTGTGGCCACATGG
CACAGAACACTAAATTTTGGTCCCATGGCTGTAACTTTAGGGTGACTA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|55641345|ref|XP_510156.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55641345|ref|XP_510156.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-509, gnl|bosTau2|chr25 (37413375-37413877)
               

               
               1-509, gnl|Hg17|chr7 (4673200-4672702)
               

               
               1-509, gnl|Mm7|chr5 (141506100-141505599)
               


               
               556-1681, gnl|bosTau2|chr25 (37413864-37414968)
               

               
               556-1681, gnl|Hg17|chr7 (4672715-4671642)
               

               
               556-1681, gnl|Mm7|chr5 (141505612-141504578)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-509, gnl|bosTau2|chr25 (37413375-37413877)
               

               
               1-509, gnl|Hg17|chr7 (4673200-4672702)
               

               
               1-509, gnl|Mm7|chr5 (141506100-141505599)
               


               
               556-1681, gnl|bosTau2|chr25 (37413864-37414968)
               

               
               556-1681, gnl|Hg17|chr7 (4672715-4671642)
               

               
               556-1681, gnl|Mm7|chr5 (141505612-141504578)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               rec (0.692281)
               

               
               cbl (0.573987)
               

               
               sug (0.381874)
               

               
               cty (0.31224)
               

               
               csk (0.281492)
               

               
               tes (0.207814)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               ute (0.132784)
               

               
               thg (0.126791)
               

               
               clu (0.119646)
               

               
               spc (0.113366)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.692281)
               

               
               cbl (0.573987)
               

               
               sug (0.381874)
               

               
               cty (0.31224)
               

               
               csk (0.281492)
               

               
               tes (0.207814)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               ute (0.132784)
               

               
               thg (0.126791)
               

               
               clu (0.119646)
               

               
               spc (0.113366)

	1-509, gnl\|bosTau2\|chr25 (37413375-37413877)
	1-509, gnl\|Hg17\|chr7 (4673200-4672702)
	1-509, gnl\|Mm7\|chr5 (141506100-141505599)

	556-1681, gnl\|bosTau2\|chr25 (37413864-37414968)
	556-1681, gnl\|Hg17\|chr7 (4672715-4671642)
	556-1681, gnl\|Mm7\|chr5 (141505612-141504578)

	rec (0.692281)
	cbl (0.573987)
	sug (0.381874)
	cty (0.31224)
	csk (0.281492)
	tes (0.207814)
	liv (0.146284)
	spl (0.143184)
	ute (0.132784)
	thg (0.126791)
	clu (0.119646)
	spc (0.113366)