Non-Coding RNA Search

Ss1.1-LyN1-MLN01D010011.5

Sequence:


               
               GGAGGGAAGGAGGCGAAGGGATCTGAAAGGGAGTGGAGCTGGCGCCTACGGTGGCTGAAG
AGGGACGCGCAGGGCCGGAGGCTGCAGGATGATGCGATTCATGCTGCTGTTCAGCCGGCA
GGGAAAGCTGCGGCTGCAAAAATGGTACCTGGCCACATCAGACAAGGAGCGAAAGAAGAT
GGTTCGGGAGCTCATGCAGGTTGTTCTGGCTCGCAAGCCCAAGATGTGCAGCTTCCTCGA
GTGGAGGGACCTCAAAGTCGTCTATAAGAGATACGCCAGCCTCTACTTCTGCTGTGCCAT
CGAGGGCCAAGACAATGAGCTCATCACACTGGAGCTGATCCATCGATACGTGGAGCTCCT
GGACAAATACTTCGGCAGTGTTTGTGAGCTGGACATCATCTTCAACTTTGAGAAGGCCTA
CTTCATCTTGGATGAGTTTCTCATGGGGGGGGATGTCCAGGACACGTCCAAGAAGAGTGT
GCTGAAGGCCATTGAGCAGGCGGACCTGCTGCAGGAGGAAGATGAGTCGCCGCGCAGCGT
GCTGGAGGAGATGGGCCTGGCATAGCCCCCCCGCCCGGCCGCCTGGAGATGTGGGGAGCT
GATGGAGAGGCGGGCGTCGGTGGCCCTTTTCTTGGTGGGACCTGCTGCCTCCCCTTCTTG
GGCCTTGAGCTGTGGGCTCAGGACCCTCAAACATTCCCTCCCTCCCATTTTCCCTTTTCC
CACTGAAGGTTTTAGGAGCTAGGAGGCAGGAAAATGTGACCAAGACGGGGGTGCTATTTG
GCTTTCACTCCCTGCCTTTGAAGAACTAACGTCACCCCAAGCTCCCTCCCTCCCCCGGCC
CATAACTGTAAATATATAAATATGTCAGGTTAAAGGGAAAAGGTTTTCAGGGCTCTTCTC
TTCTCCCTGCCCCATAAACCTACCTCCACCCCTCCCTGCAGCCAGCCAGGGCAGCCTCTC
TGCCTGGGAGGGGGACTTCTGTGTAGTGAGAGGGAAGTCCTGTTCCCTCAGCTGCCCCCT
CCCCTTCCTTCTTGGCTGCAGTAGGGCCTCTGTCCACTTCCAGGGGAGGAACAACGTAGT
TAATTTTTTTCTAACCTTTGCCACTTCGAGGGAAGGGAGGGCTGGGGGAAGGGCAGACTT
TATAGAAGCCTGGGCCCTGTCCCTCCTTCACTCGTGTTCTGGGTGAGGCAGGAGCTAAGG
GGGTGGGGTGGGGAAGGTGTCTGACTTTATTTCCTTTCCTCTGAAATAAAAGGAAAAGCG
TTTCTGGAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGGGAAGGAGGCGAAGGGATCTGAAAGGGAGTGGAGCTGGCGCCTACGGTGGCTGAAG
AGGGACGCGCAGGGCCGGAGGCTGCAGGATGATGCGATTCATGCTGCTGTTCAGCCGGCA
GGGAAAGCTGCGGCTGCAAAAATGGTACCTGGCCACATCAGACAAGGAGCGAAAGAAGAT
GGTTCGGGAGCTCATGCAGGTTGTTCTGGCTCGCAAGCCCAAGATGTGCAGCTTCCTCGA
GTGGAGGGACCTCAAAGTCGTCTATAAGAGATACGCCAGCCTCTACTTCTGCTGTGCCAT
CGAGGGCCAAGACAATGAGCTCATCACACTGGAGCTGATCCATCGATACGTGGAGCTCCT
GGACAAATACTTCGGCAGTGTTTGTGAGCTGGACATCATCTTCAACTTTGAGAAGGCCTA
CTTCATCTTGGATGAGTTTCTCATGGGGGGGGATGTCCAGGACACGTCCAAGAAGAGTGT
GCTGAAGGCCATTGAGCAGGCGGACCTGCTGCAGGAGGAAGATGAGTCGCCGCGCAGCGT
GCTGGAGGAGATGGGCCTGGCATAGCCCCCCCGCCCGGCCGCCTGGAGATGTGGGGAGCT
GATGGAGAGGCGGGCGTCGGTGGCCCTTTTCTTGGTGGGACCTGCTGCCTCCCCTTCTTG
GGCCTTGAGCTGTGGGCTCAGGACCCTCAAACATTCCCTCCCTCCCATTTTCCCTTTTCC
CACTGAAGGTTTTAGGAGCTAGGAGGCAGGAAAATGTGACCAAGACGGGGGTGCTATTTG
GCTTTCACTCCCTGCCTTTGAAGAACTAACGTCACCCCAAGCTCCCTCCCTCCCCCGGCC
CATAACTGTAAATATATAAATATGTCAGGTTAAAGGGAAAAGGTTTTCAGGGCTCTTCTC
TTCTCCCTGCCCCATAAACCTACCTCCACCCCTCCCTGCAGCCAGCCAGGGCAGCCTCTC
TGCCTGGGAGGGGGACTTCTGTGTAGTGAGAGGGAAGTCCTGTTCCCTCAGCTGCCCCCT
CCCCTTCCTTCTTGGCTGCAGTAGGGCCTCTGTCCACTTCCAGGGGAGGAACAACGTAGT
TAATTTTTTTCTAACCTTTGCCACTTCGAGGGAAGGGAGGGCTGGGGGAAGGGCAGACTT
TATAGAAGCCTGGGCCCTGTCCCTCCTTCACTCGTGTTCTGGGTGAGGCAGGAGCTAAGG
GGGTGGGGTGGGGAAGGTGTCTGACTTTATTTCCTTTCCTCTGAAATAAAAGGAAAAGCG
TTTCTGGAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|4557471|ref|NP_001274.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|4557471|ref|NP_001274.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               661-757, - strand, RNAz p=0.982198
               

               
               836-1067, - strand, RNAz p=0.995879
               

               
               1107-1212, - strand, RNAz p=0.820007

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               661-757, - strand, RNAz p=0.982198
               

               
               836-1067, - strand, RNAz p=0.995879
               

               
               1107-1212, - strand, RNAz p=0.820007

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               91-288, gnl|bosTau2|chr25 (32783819-32784016)
               

               
               91-288, gnl|Hg17|chr7 (100393309-100393506)
               

               
               91-288, gnl|Mm7|chr5 (136014153-136013952)
               


               
               509-1268, gnl|bosTau2|chr25 (32787747-32788540)
               

               
               509-1268, gnl|Hg17|chr7 (100397226-100397992)
               

               
               509-1268, gnl|Mm7|chr5 (136006704-136005908)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               91-288, gnl|bosTau2|chr25 (32783819-32784016)
               

               
               91-288, gnl|Hg17|chr7 (100393309-100393506)
               

               
               91-288, gnl|Mm7|chr5 (136014153-136013952)
               


               
               509-1268, gnl|bosTau2|chr25 (32787747-32788540)
               

               
               509-1268, gnl|Hg17|chr7 (100397226-100397992)
               

               
               509-1268, gnl|Mm7|chr5 (136006704-136005908)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               nlu (0.575043)
               

               
               amn (0.417711)
               

               
               hyp (0.285673)
               

               
               jca (0.22792)
               

               
               col (0.195008)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.575043)
               

               
               amn (0.417711)
               

               
               hyp (0.285673)
               

               
               jca (0.22792)
               

               
               col (0.195008)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

	661-757, - strand, RNAz p=0.982198
	836-1067, - strand, RNAz p=0.995879
	1107-1212, - strand, RNAz p=0.820007

	91-288, gnl\|bosTau2\|chr25 (32783819-32784016)
	91-288, gnl\|Hg17\|chr7 (100393309-100393506)
	91-288, gnl\|Mm7\|chr5 (136014153-136013952)

	509-1268, gnl\|bosTau2\|chr25 (32787747-32788540)
	509-1268, gnl\|Hg17\|chr7 (100397226-100397992)
	509-1268, gnl\|Mm7\|chr5 (136006704-136005908)

	nlu (0.575043)
	amn (0.417711)
	hyp (0.285673)
	jca (0.22792)
	col (0.195008)
	csp (0.161186)
	cag (0.151194)
	lnt (0.142308)
	nmm (0.132802)
	ese (0.126502)
	ebs (0.118301)
	ecc (0.115035)
	eje (0.0988338)