Ss1.1-LyN1-MLN01D010053.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAGCGACCCCCGAAAGGCAAGGCCGGCCCCGCGAGCCAGGGTGTCCGCGACGGGACGGC CGCCTGGCCCGCCCCTCCGCTCGGTGATGGTCCTTGTCCTCCAGCACAGGGATGGAGGAA CTATCGGCCCAGGAAACAGCAGGATCTCCAAGGGTCCCGTTTCAGCCTTTGGAGGCCTAC GCTGAGGGTCTGTCCCCAACACCTCAGTTCGTGCAGGACACCGACATGGAGCAGGGGCTC ACTGGGGCTCCACCTGTTCCCCAGGTGCCTGCTCTTCCCCACGAGGGAAGCCCAGGAGAC CAGGCAGCTGCGCTCTTGACAGCCATGTACCAGGAGTTTGTGACATTCGAGGATGTGGCT GTGCACCTTACTCGAGAGGAATGGGGATGCCTGGACCCCGTTCAGAGGGATCTCTACCGA GAAGTGATGTTAGAGAATTATGGGAACCTGGTCTCACTGGGCATACTTCTCCGCCTTCCC ACCACCCGGATTCATAGTGTGAATTCCTGCCCGGCCCTGAGTCATACCCAGGCAAGTGCT TTCTCTGGAGAAACACTTGCAGTTCTTTCAGCAGGAATCTCCAAGAGATGGCCCAAGTAT CGGCTCCCCATCGATAGTGCTCGTCCCTGCTCGGAAACTCCTTGTCCACGATTGTAACAT TGCAGCTCCTCAAATGACCTTTGATAAGTTTCAAAGGGCCACGGAAGCCTTCCGTTGCAA CCAGCATTTTGAGCCCTGAATTCTGAGTTCATTCAGAAGCCGTGGTTGGTGGTCCTCTCC TTGTGTTCTCAGAAACCGCCAAGTTCAACTCCAGCTCTTCAGTCGTGATCTGGTCGTGTT ATTTTAGAATGTGAACGTGCGCCGTGTGCTCCTCCCTTTCTGAACTTGACCTGGCCCCTC TATTGCCTGACTCTCCCGGGACCCCGGGCCTTGCTCAGATGTAACGTTTGGGTCTTTTCT CTCCTTTAACTCCCCATGGCCCCCTCCAGGATCTTGCCTTTGTCCCCTTTTTTCTCTGTG GTGCTGTTCAGATTGATGCATGTATGTGACCTTTCAGATCAAGTGTTCCTTAGCTCTGTC CTTGATGGAGGGGAAATGGGAGGGGCAGAAGAGTTCGTTTCCTTATTTTCAGGCCGTCAC ATTGAATGTATATTAACAGCTTGTTAAACTGTAAAGGGATACGTAATTGTAACCTACTGT ACATTTTATCTCATAATTATATGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAGCGACCCCCGAAAGGCAAGGCCGGCCCCGCGAGCCAGGGTGTCCGCGACGGGACGGC CGCCTGGCCCGCCCCTCCGCTCGGTGATGGTCCTTGTCCTCCAGCACAGGGATGGAGGAA CTATCGGCCCAGGAAACAGCAGGATCTCCAAGGGTCCCGTTTCAGCCTTTGGAGGCCTAC GCTGAGGGTCTGTCCCCAACACCTCAGTTCGTGCAGGACACCGACATGGAGCAGGGGCTC ACTGGGGCTCCACCTGTTCCCCAGGTGCCTGCTCTTCCCCACGAGGGAAGCCCAGGAGAC CAGGCAGCTGCGCTCTTGACAGCCATGTACCAGGAGTTTGTGACATTCGAGGATGTGGCT GTGCACCTTACTCGAGAGGAATGGGGATGCCTGGACCCCGTTCAGAGGGATCTCTACCGA GAAGTGATGTTAGAGAATTATGGGAACCTGGTCTCACTGGGCATACTTCTCCGCCTTCCC ACCACCCGGATTCATAGTGTGAATTCCTGCCCGGCCCTGAGTCATACCCAGGCAAGTGCT TTCTCTGGAGAAACACTTGCAGTTCTTTCAGCAGGAATCTCCAAGAGATGGCCCAAGTAT CGGCTCCCCATCGATAGTGCTCGTCCCTGCTCGGAAACTCCTTGTCCACGATTGTAACAT TGCAGCTCCTCAAATGACCTTTGATAAGTTTCAAAGGGCCACGGAAGCCTTCCGTTGCAA CCAGCATTTTGAGCCCTGAATTCTGAGTTCATTCAGAAGCCGTGGTTGGTGGTCCTCTCC TTGTGTTCTCAGAAACCGCCAAGTTCAACTCCAGCTCTTCAGTCGTGATCTGGTCGTGTT ATTTTAGAATGTGAACGTGCGCCGTGTGCTCCTCCCTTTCTGAACTTGACCTGGCCCCTC TATTGCCTGACTCTCCCGGGACCCCGGGCCTTGCTCAGATGTAACGTTTGGGTCTTTTCT CTCCTTTAACTCCCCATGGCCCCCTCCAGGATCTTGCCTTTGTCCCCTTTTTTCTCTGTG GTGCTGTTCAGATTGATGCATGTATGTGACCTTTCAGATCAAGTGTTCCTTAGCTCTGTC CTTGATGGAGGGGAAATGGGAGGGGCAGAAGAGTTCGTTTCCTTATTTTCAGGCCGTCAC ATTGAATGTATATTAACAGCTTGTTAAACTGTAAAGGGATACGTAATTGTAACCTACTGT ACATTTTATCTCATAATTATATGA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 90 entry(ies) | More info |
| Aligned organism(s): 90 entry(ies) | Help | Less info |
| 84-247, gnl|bosTau2|chr25 (34423625-34423788) | |
| 84-247, gnl|canFam2|chr6 (13004172-13004333) | |
| 84-247, gnl|canFam2|chr6 (13004334-13004173) | |
| 84-247, gnl|dasNov1|scaffold_5530 (59368-59532) | |
| 84-247, gnl|dasNov1|scaffold_5530 (59532-59369) | |
| 84-247, gnl|echTel1|scaffold_316477 (3508-3652) | |
| 84-247, gnl|echTel1|scaffold_316477 (3621-3514) | |
| 84-247, gnl|hg17|chr12 (7019073-7019238) | |
| 84-247, gnl|hg17|chr13 (113524048-113524184) | |
| 84-247, gnl|Hg17|chr7 (98802806-98802969) | |
| 84-247, gnl|loxAfr1|scaffold_110931 (5395-5560) | |
| 84-247, gnl|loxAfr1|scaffold_110931 (5557-5396) | |
| 84-247, gnl|mm7|chr5 (144262242-144262078) | |
| 84-247, gnl|mm7|chr5 (144262081-144262241) | |
| 84-247, gnl|Mm7|chr5 (144262080-144262242) | |
| 84-247, gnl|oryCun1|scaffold_211986 (41277-41439) | |
| 84-247, gnl|oryCun1|scaffold_211986 (41439-41278) | |
| 84-247, gnl|panTro1|chr14_random (3434582-3434446) | |
| 84-247, gnl|panTro1|chr6 (100511677-100511517) | |
| 84-247, gnl|rheMac2|chr11 (7233823-7233988) | |
| 84-247, gnl|rheMac2|chr17 (94019656-94019520) | |
| 84-247, gnl|rn3|chr12 (9715971-9716133) | |
| 84-247, gnl|rn3|chr12 (9716130-9715979) | |
| 332-476, gnl|bosTau2|chr18 (42073787-42073931) | |
| 332-476, gnl|canFam2|chr1 (119331356-119331176) | |
| 332-476, gnl|canFam2|chr1 (119331341-119331176) | |
| 332-476, gnl|canFam2|chr1 (119331356-119331176) | |
| 332-476, gnl|dasNov1|scaffold_71637 (2525-2707) | |
| 332-476, gnl|dasNov1|scaffold_71637 (2540-2708) | |
| 332-476, gnl|dasNov1|scaffold_71637 (2525-2711) | |
| 332-476, gnl|echTel1|scaffold_167627 (7327-7509) | |
| 332-476, gnl|echTel1|scaffold_167627 (7342-7509) | |
| 332-476, gnl|echTel1|scaffold_167627 (7326-7509) | |
| 332-476, gnl|fr1|chrUn (307423631-307423472) | |
| 332-476, gnl|fr1|chrUn (307423073-307422909) | |
| 332-476, gnl|fr1|chrUn (307423073-307422902) | |
| 332-476, gnl|hg17|chr12 (36255640-36255808) | |
| 332-476, gnl|hg17|chr17 (21782310-21782493) | |
| 332-476, gnl|Hg17|chr19 (42782367-42782506) | |
| 332-476, gnl|hg17|chr9 (43868394-43868577) | |
| 332-476, gnl|loxAfr1|scaffold_7688 (4634-4801) | |
| 332-476, gnl|loxAfr1|scaffold_7688 (4648-4801) | |
| 332-476, gnl|loxAfr1|scaffold_7688 (4633-4801) | |
| 332-476, gnl|mm7|chr7 (27118132-27118292) | |
| 332-476, gnl|mm7|chr7 (27118147-27118311) | |
| 332-476, gnl|mm7|chr7 (27118144-27118293) | |
| 332-476, gnl|Mm7|chr7 (27118161-27118292) | |
| 332-476, gnl|monDom2|scaffold_121 (874322-874485) | |
| 332-476, gnl|monDom2|scaffold_179 (599502-599326) | |
| 332-476, gnl|monDom2|scaffold_179 (599502-599346) | |
| 332-476, gnl|oryCun1|scaffold_122546 (1799-1631) | |
| 332-476, gnl|oryCun1|scaffold_80746 (4228-4047) | |
| 332-476, gnl|oryCun1|scaffold_80746 (4213-4039) | |
| 332-476, gnl|panTro1|chr11 (42925261-42925444) | |
| 332-476, gnl|panTro1|chr21 (26419022-26419192) | |
| 332-476, gnl|panTro1|chrUn_random (27316726-27316543) | |
| 332-476, gnl|rheMac2|chr19 (43298782-43298597) | |
| 332-476, gnl|rheMac2|chr19 (43298767-43298597) | |
| 332-476, gnl|rheMac2|chr19 (43298782-43298597) | |
| 332-476, gnl|rn3|chr1 (84864723-84864889) | |
| 332-476, gnl|rn3|chr1 (84864726-84864899) | |
| 332-476, gnl|rn3|chr1 (84864723-84864895) | |
| 340-461, gnl|bosTau2|chr14 (3131093-3130972) | |
| 340-461, gnl|canFam2|chr1 (102878491-102878381) | |
| 340-461, gnl|canFam2|chr13 (41121590-41121748) | |
| 340-461, gnl|dasNov1|scaffold_25209 (12713-12554) | |
| 340-461, gnl|echTel1|scaffold_179183 (3819-3977) | |
| 340-461, gnl|echTel1|scaffold_45544 (2587-2700) | |
| 340-461, gnl|galGal2|chrUn (125533100-125533258) | |
| 340-461, gnl|hg17|chr19 (63290081-63290194) | |
| 340-461, gnl|hg17|chr8 (145974217-145974375) | |
| 340-461, gnl|Hg17|chr8 (145974347-145974226) | |
| 340-461, gnl|loxAfr1|scaffold_13772 (22285-22430) | |
| 340-461, gnl|loxAfr1|scaffold_9264 (60781-60667) | |
| 340-461, gnl|Mm7|chr15 (76999681-76999560) | |
| 340-461, gnl|mm7|chr7 (123489801-123489932) | |
| 340-461, gnl|mm7|chr7 (11358241-11358351) | |
| 340-461, gnl|monDom2|scaffold_227 (288882-288998) | |
| 340-461, gnl|monDom2|scaffold_79 (4532851-4532703) | |
| 340-461, gnl|oryCun1|scaffold_156446 (5545-5704) | |
| 340-461, gnl|oryCun1|scaffold_193473 (11130-11017) | |
| 340-461, gnl|panTro1|chr20 (61028187-61028300) | |
| 340-461, gnl|panTro1|chr7 (149273589-149273747) | |
| 340-461, gnl|rheMac2|chr19 (63846800-63846913) | |
| 340-461, gnl|rheMac2|chr8 (147423608-147423766) | |
| 340-461, gnl|rn3|chr1 (186837290-186837421) | |
| 340-461, gnl|rn3|chr1 (73324708-73324818) | |
| 653-1222, gnl|bosTau2|chr25 (34426755-34427326) | |
| 653-1222, gnl|Hg17|chr7 (98806384-98806963) | |
| 653-1222, gnl|Mm7|chr5 (144265937-144266474) |
| Aligned organism(s): 90 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 84-247, gnl|bosTau2|chr25 (34423625-34423788) | |
| 84-247, gnl|canFam2|chr6 (13004172-13004333) | |
| 84-247, gnl|canFam2|chr6 (13004334-13004173) | |
| 84-247, gnl|dasNov1|scaffold_5530 (59368-59532) | |
| 84-247, gnl|dasNov1|scaffold_5530 (59532-59369) | |
| 84-247, gnl|echTel1|scaffold_316477 (3508-3652) | |
| 84-247, gnl|echTel1|scaffold_316477 (3621-3514) | |
| 84-247, gnl|hg17|chr12 (7019073-7019238) | |
| 84-247, gnl|hg17|chr13 (113524048-113524184) | |
| 84-247, gnl|Hg17|chr7 (98802806-98802969) | |
| 84-247, gnl|loxAfr1|scaffold_110931 (5395-5560) | |
| 84-247, gnl|loxAfr1|scaffold_110931 (5557-5396) | |
| 84-247, gnl|mm7|chr5 (144262242-144262078) | |
| 84-247, gnl|mm7|chr5 (144262081-144262241) | |
| 84-247, gnl|Mm7|chr5 (144262080-144262242) | |
| 84-247, gnl|oryCun1|scaffold_211986 (41277-41439) | |
| 84-247, gnl|oryCun1|scaffold_211986 (41439-41278) | |
| 84-247, gnl|panTro1|chr14_random (3434582-3434446) | |
| 84-247, gnl|panTro1|chr6 (100511677-100511517) | |
| 84-247, gnl|rheMac2|chr11 (7233823-7233988) | |
| 84-247, gnl|rheMac2|chr17 (94019656-94019520) | |
| 84-247, gnl|rn3|chr12 (9715971-9716133) | |
| 84-247, gnl|rn3|chr12 (9716130-9715979) | |
| 332-476, gnl|bosTau2|chr18 (42073787-42073931) | |
| 332-476, gnl|canFam2|chr1 (119331356-119331176) | |
| 332-476, gnl|canFam2|chr1 (119331341-119331176) | |
| 332-476, gnl|canFam2|chr1 (119331356-119331176) | |
| 332-476, gnl|dasNov1|scaffold_71637 (2525-2707) | |
| 332-476, gnl|dasNov1|scaffold_71637 (2540-2708) | |
| 332-476, gnl|dasNov1|scaffold_71637 (2525-2711) | |
| 332-476, gnl|echTel1|scaffold_167627 (7327-7509) | |
| 332-476, gnl|echTel1|scaffold_167627 (7342-7509) | |
| 332-476, gnl|echTel1|scaffold_167627 (7326-7509) | |
| 332-476, gnl|fr1|chrUn (307423631-307423472) | |
| 332-476, gnl|fr1|chrUn (307423073-307422909) | |
| 332-476, gnl|fr1|chrUn (307423073-307422902) | |
| 332-476, gnl|hg17|chr12 (36255640-36255808) | |
| 332-476, gnl|hg17|chr17 (21782310-21782493) | |
| 332-476, gnl|Hg17|chr19 (42782367-42782506) | |
| 332-476, gnl|hg17|chr9 (43868394-43868577) | |
| 332-476, gnl|loxAfr1|scaffold_7688 (4634-4801) | |
| 332-476, gnl|loxAfr1|scaffold_7688 (4648-4801) | |
| 332-476, gnl|loxAfr1|scaffold_7688 (4633-4801) | |
| 332-476, gnl|mm7|chr7 (27118132-27118292) | |
| 332-476, gnl|mm7|chr7 (27118147-27118311) | |
| 332-476, gnl|mm7|chr7 (27118144-27118293) | |
| 332-476, gnl|Mm7|chr7 (27118161-27118292) | |
| 332-476, gnl|monDom2|scaffold_121 (874322-874485) | |
| 332-476, gnl|monDom2|scaffold_179 (599502-599326) | |
| 332-476, gnl|monDom2|scaffold_179 (599502-599346) | |
| 332-476, gnl|oryCun1|scaffold_122546 (1799-1631) | |
| 332-476, gnl|oryCun1|scaffold_80746 (4228-4047) | |
| 332-476, gnl|oryCun1|scaffold_80746 (4213-4039) | |
| 332-476, gnl|panTro1|chr11 (42925261-42925444) | |
| 332-476, gnl|panTro1|chr21 (26419022-26419192) | |
| 332-476, gnl|panTro1|chrUn_random (27316726-27316543) | |
| 332-476, gnl|rheMac2|chr19 (43298782-43298597) | |
| 332-476, gnl|rheMac2|chr19 (43298767-43298597) | |
| 332-476, gnl|rheMac2|chr19 (43298782-43298597) | |
| 332-476, gnl|rn3|chr1 (84864723-84864889) | |
| 332-476, gnl|rn3|chr1 (84864726-84864899) | |
| 332-476, gnl|rn3|chr1 (84864723-84864895) | |
| 340-461, gnl|bosTau2|chr14 (3131093-3130972) | |
| 340-461, gnl|canFam2|chr1 (102878491-102878381) | |
| 340-461, gnl|canFam2|chr13 (41121590-41121748) | |
| 340-461, gnl|dasNov1|scaffold_25209 (12713-12554) | |
| 340-461, gnl|echTel1|scaffold_179183 (3819-3977) | |
| 340-461, gnl|echTel1|scaffold_45544 (2587-2700) | |
| 340-461, gnl|galGal2|chrUn (125533100-125533258) | |
| 340-461, gnl|hg17|chr19 (63290081-63290194) | |
| 340-461, gnl|hg17|chr8 (145974217-145974375) | |
| 340-461, gnl|Hg17|chr8 (145974347-145974226) | |
| 340-461, gnl|loxAfr1|scaffold_13772 (22285-22430) | |
| 340-461, gnl|loxAfr1|scaffold_9264 (60781-60667) | |
| 340-461, gnl|Mm7|chr15 (76999681-76999560) | |
| 340-461, gnl|mm7|chr7 (123489801-123489932) | |
| 340-461, gnl|mm7|chr7 (11358241-11358351) | |
| 340-461, gnl|monDom2|scaffold_227 (288882-288998) | |
| 340-461, gnl|monDom2|scaffold_79 (4532851-4532703) | |
| 340-461, gnl|oryCun1|scaffold_156446 (5545-5704) | |
| 340-461, gnl|oryCun1|scaffold_193473 (11130-11017) | |
| 340-461, gnl|panTro1|chr20 (61028187-61028300) | |
| 340-461, gnl|panTro1|chr7 (149273589-149273747) | |
| 340-461, gnl|rheMac2|chr19 (63846800-63846913) | |
| 340-461, gnl|rheMac2|chr8 (147423608-147423766) | |
| 340-461, gnl|rn3|chr1 (186837290-186837421) | |
| 340-461, gnl|rn3|chr1 (73324708-73324818) | |
| 653-1222, gnl|bosTau2|chr25 (34426755-34427326) | |
| 653-1222, gnl|Hg17|chr7 (98806384-98806963) | |
| 653-1222, gnl|Mm7|chr5 (144265937-144266474) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| pla (0.133672) | |
| sug (0.127291) | |
| jca (0.11396) | |
| jej (0.0989218) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) | |
| sug (0.127291) | |
| jca (0.11396) | |
| jej (0.0989218) |