Ss1.1-LyN1-MLN01D010060.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGTCCGGCTAGGAAGATGGCGTCCCGCAAGGAAGGCACTGGTTCTGCCGCCACCTCTTC CAGCTCCACCACCGGCGCTGCTGGGAAAGGCAAAGGCAAAGGAGGGTCTGGAGATTCGGC GGTGAAGCAAGTGCAGATAGATGGCTTGGTGGTCTTGAAGATTATCAAACATTACCAAGA AGAAGGACAAGGAACTGAGGTGGTTCAAGGAGTGCTTTTGGGCCTTGTTGTAGAAGATCG ACTTGAAATTACCAACTGCTTTCCTTTTCCCCAGCACACAGAAGATGATGCTGACTTTGA TGAAGTTCAATATCAGATGGAAATGATGCGCAGCCTTCGCCACGTAAACATTGACCATCT CCATGTGGGCTGGTACCAGTCCACATACTATGGCTCTTTTGTCACCCGGGCACTTCTGGA TTCTCAGTTTAGTTACCAGCATGCGATTGAAGAGTCTGTTGTTCTCATTTACGATCCCAT AAAAACTGCCCAAGGATCTCTCTCACTAAAGGCATACAGACTGACTCCTAAACTGATGGA AGTTTGTAAAGAGAAGGATTTTTCTCCCGAAGCATTGAAAAAGGGAAATATCACCTTTGA GCACATGTTTGAAGAAGTGCCGATTGTCATTAAAAATTCACATCTGATCAATGTCCTAAT GTGGGAGCTTGAGAAGAAGTCAGCTGTAGCAGATAAACATGAATTGCTCAGTCTTGCCAG CAGCAATCATTTGGGGAAGAACCTCCAGTTGCTGATGGACAGAGTGGATGAAATGAGCCA AGATATAGTTAAATATAACACATATCTGAGGAACACGAGTAAACAGCAGCAGCAGAAACA TCAGTATCAGCAGCGCCGCCAGCAGGAGAATATGCAGCGCCAGAGTCGAGGAGAACCGCC ACTCCCTGAGGAGGACCTGTCCAAGCTCTTCAAGCCGCACCAGCCCCCTGCCAGGATGGA TTCACTGCTCATTGCAGGCCAGATTAACACTTACTGCCAGAACATCAAGGAGTTCACTGC CCAAAACTTAGGCAAACTCTTCATGGCCCAGGCTCTTCAAGAATACAACAACTAAGAAAA GGAAGTTTCCAGAAAAGGAGTTAACATGGACTCTTGAGATCACATTGGGGCGACTTTTGG AAGAAACACACTTGCATATTGAAAAGTCTTTCTAGCACATAATAATAAAATAAAGATAAA ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGTCCGGCTAGGAAGATGGCGTCCCGCAAGGAAGGCACTGGTTCTGCCGCCACCTCTTC CAGCTCCACCACCGGCGCTGCTGGGAAAGGCAAAGGCAAAGGAGGGTCTGGAGATTCGGC GGTGAAGCAAGTGCAGATAGATGGCTTGGTGGTCTTGAAGATTATCAAACATTACCAAGA AGAAGGACAAGGAACTGAGGTGGTTCAAGGAGTGCTTTTGGGCCTTGTTGTAGAAGATCG ACTTGAAATTACCAACTGCTTTCCTTTTCCCCAGCACACAGAAGATGATGCTGACTTTGA TGAAGTTCAATATCAGATGGAAATGATGCGCAGCCTTCGCCACGTAAACATTGACCATCT CCATGTGGGCTGGTACCAGTCCACATACTATGGCTCTTTTGTCACCCGGGCACTTCTGGA TTCTCAGTTTAGTTACCAGCATGCGATTGAAGAGTCTGTTGTTCTCATTTACGATCCCAT AAAAACTGCCCAAGGATCTCTCTCACTAAAGGCATACAGACTGACTCCTAAACTGATGGA AGTTTGTAAAGAGAAGGATTTTTCTCCCGAAGCATTGAAAAAGGGAAATATCACCTTTGA GCACATGTTTGAAGAAGTGCCGATTGTCATTAAAAATTCACATCTGATCAATGTCCTAAT GTGGGAGCTTGAGAAGAAGTCAGCTGTAGCAGATAAACATGAATTGCTCAGTCTTGCCAG CAGCAATCATTTGGGGAAGAACCTCCAGTTGCTGATGGACAGAGTGGATGAAATGAGCCA AGATATAGTTAAATATAACACATATCTGAGGAACACGAGTAAACAGCAGCAGCAGAAACA TCAGTATCAGCAGCGCCGCCAGCAGGAGAATATGCAGCGCCAGAGTCGAGGAGAACCGCC ACTCCCTGAGGAGGACCTGTCCAAGCTCTTCAAGCCGCACCAGCCCCCTGCCAGGATGGA TTCACTGCTCATTGCAGGCCAGATTAACACTTACTGCCAGAACATCAAGGAGTTCACTGC CCAAAACTTAGGCAAACTCTTCATGGCCCAGGCTCTTCAAGAATACAACAACTAAGAAAA GGAAGTTTCCAGAAAAGGAGTTAACATGGACTCTTGAGATCACATTGGGGCGACTTTTGG AAGAAACACACTTGCATATTGAAAAGTCTTTCTAGCACATAATAATAAAATAAAGATAAA ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 60 entry(ies) | More info |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
| 148-305, gnl|bosTau2|chr14 (29794132-29794289) | |
| 148-305, gnl|canFam2|chr13 (19211398-19211563) | |
| 148-305, gnl|danRer3|chr19 (27879910-27880082) | |
| 148-305, gnl|dasNov1|scaffold_7144 (5307-5472) | |
| 148-305, gnl|echTel1|scaffold_320307 (35554-35389) | |
| 148-305, gnl|fr1|chrUn (55710998-55710829) | |
| 148-305, gnl|galGal2|chr2 (133777330-133777165) | |
| 148-305, gnl|hg17|chr8 (117807430-117807595) | |
| 148-305, gnl|Hg17|chr8 (117807593-117807436) | |
| 148-305, gnl|loxAfr1|scaffold_50968 (4976-5141) | |
| 148-305, gnl|mm7|chr15 (51896827-51896992) | |
| 148-305, gnl|Mm7|chr15 (51896990-51896833) | |
| 148-305, gnl|monDom2|scaffold_3 (40173491-40173325) | |
| 148-305, gnl|oryCun1|scaffold_11443 (231-396) | |
| 148-305, gnl|panTro1|chr7 (120461814-120461979) | |
| 148-305, gnl|rheMac2|chr8 (119237305-119237470) | |
| 148-305, gnl|rn3|chr7 (88150999-88151164) | |
| 148-305, gnl|tetNig1|chr8 (3505976-3505814) | |
| 148-305, gnl|xenTro1|scaffold_301 (376311-376476) | |
| 455-573, gnl|bosTau2|chr14 (29845745-29845863) | |
| 455-573, gnl|canFam2|chr13 (19152596-19152731) | |
| 455-573, gnl|danRer3|chr19 (27823401-27823525) | |
| 455-573, gnl|dasNov1|scaffold_13536 (22793-22661) | |
| 455-573, gnl|echTel1|scaffold_210592 (13675-13805) | |
| 455-573, gnl|fr1|chrUn (55722688-55722574) | |
| 455-573, gnl|galGal2|chr2 (133821671-133821535) | |
| 455-573, gnl|hg17|chr8 (117738623-117738757) | |
| 455-573, gnl|Hg17|chr8 (117738752-117738635) | |
| 455-573, gnl|loxAfr1|scaffold_16352 (12511-12646) | |
| 455-573, gnl|mm7|chr15 (51851966-51852101) | |
| 455-573, gnl|Mm7|chr15 (51852096-51851978) | |
| 455-573, gnl|monDom2|scaffold_3 (40242101-40241966) | |
| 455-573, gnl|oryCun1|scaffold_201523 (84002-83866) | |
| 455-573, gnl|panTro1|chr7 (120395438-120395572) | |
| 455-573, gnl|rheMac2|chr8 (119171796-119171930) | |
| 455-573, gnl|rn3|chr7 (88102789-88102924) | |
| 455-573, gnl|tetNig1|chr8 (3516917-3516793) | |
| 455-573, gnl|xenTro1|scaffold_301 (323076-323197) | |
| 574-723, gnl|bosTau2|chr14 (29847099-29847248) | |
| 574-723, gnl|canFam2|chr13 (19151273-19151437) | |
| 574-723, gnl|danRer3|chr19 (27820536-27820697) | |
| 574-723, gnl|dasNov1|scaffold_13536 (24277-24113) | |
| 574-723, gnl|echTel1|scaffold_210592 (12217-12381) | |
| 574-723, gnl|fr1|chrUn (55724916-55724759) | |
| 574-723, gnl|galGal2|chr2 (133823180-133823033) | |
| 574-723, gnl|hg17|chr8 (117737272-117737436) | |
| 574-723, gnl|Hg17|chr8 (117737425-117737276) | |
| 574-723, gnl|loxAfr1|scaffold_152975 (145-282) | |
| 574-723, gnl|mm7|chr15 (51850749-51850913) | |
| 574-723, gnl|Mm7|chr15 (51850902-51850753) | |
| 574-723, gnl|monDom2|scaffold_3 (40243604-40243440) | |
| 574-723, gnl|oryCun1|scaffold_34747 (887-1024) | |
| 574-723, gnl|panTro1|chr7 (120394088-120394252) | |
| 574-723, gnl|rheMac2|chr8 (119170473-119170637) | |
| 574-723, gnl|rn3|chr7 (88101589-88101753) | |
| 574-723, gnl|tetNig1|chr8 (3519321-3519161) | |
| 574-723, gnl|xenTro1|scaffold_301 (319672-319819) | |
| 975-1200, gnl|bosTau2|chr14 (29861121-29861344) | |
| 975-1200, gnl|Hg17|chr8 (117726526-117726258) | |
| 975-1200, gnl|Mm7|chr15 (51841193-51840947) |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 148-305, gnl|bosTau2|chr14 (29794132-29794289) | |
| 148-305, gnl|canFam2|chr13 (19211398-19211563) | |
| 148-305, gnl|danRer3|chr19 (27879910-27880082) | |
| 148-305, gnl|dasNov1|scaffold_7144 (5307-5472) | |
| 148-305, gnl|echTel1|scaffold_320307 (35554-35389) | |
| 148-305, gnl|fr1|chrUn (55710998-55710829) | |
| 148-305, gnl|galGal2|chr2 (133777330-133777165) | |
| 148-305, gnl|hg17|chr8 (117807430-117807595) | |
| 148-305, gnl|Hg17|chr8 (117807593-117807436) | |
| 148-305, gnl|loxAfr1|scaffold_50968 (4976-5141) | |
| 148-305, gnl|mm7|chr15 (51896827-51896992) | |
| 148-305, gnl|Mm7|chr15 (51896990-51896833) | |
| 148-305, gnl|monDom2|scaffold_3 (40173491-40173325) | |
| 148-305, gnl|oryCun1|scaffold_11443 (231-396) | |
| 148-305, gnl|panTro1|chr7 (120461814-120461979) | |
| 148-305, gnl|rheMac2|chr8 (119237305-119237470) | |
| 148-305, gnl|rn3|chr7 (88150999-88151164) | |
| 148-305, gnl|tetNig1|chr8 (3505976-3505814) | |
| 148-305, gnl|xenTro1|scaffold_301 (376311-376476) | |
| 455-573, gnl|bosTau2|chr14 (29845745-29845863) | |
| 455-573, gnl|canFam2|chr13 (19152596-19152731) | |
| 455-573, gnl|danRer3|chr19 (27823401-27823525) | |
| 455-573, gnl|dasNov1|scaffold_13536 (22793-22661) | |
| 455-573, gnl|echTel1|scaffold_210592 (13675-13805) | |
| 455-573, gnl|fr1|chrUn (55722688-55722574) | |
| 455-573, gnl|galGal2|chr2 (133821671-133821535) | |
| 455-573, gnl|hg17|chr8 (117738623-117738757) | |
| 455-573, gnl|Hg17|chr8 (117738752-117738635) | |
| 455-573, gnl|loxAfr1|scaffold_16352 (12511-12646) | |
| 455-573, gnl|mm7|chr15 (51851966-51852101) | |
| 455-573, gnl|Mm7|chr15 (51852096-51851978) | |
| 455-573, gnl|monDom2|scaffold_3 (40242101-40241966) | |
| 455-573, gnl|oryCun1|scaffold_201523 (84002-83866) | |
| 455-573, gnl|panTro1|chr7 (120395438-120395572) | |
| 455-573, gnl|rheMac2|chr8 (119171796-119171930) | |
| 455-573, gnl|rn3|chr7 (88102789-88102924) | |
| 455-573, gnl|tetNig1|chr8 (3516917-3516793) | |
| 455-573, gnl|xenTro1|scaffold_301 (323076-323197) | |
| 574-723, gnl|bosTau2|chr14 (29847099-29847248) | |
| 574-723, gnl|canFam2|chr13 (19151273-19151437) | |
| 574-723, gnl|danRer3|chr19 (27820536-27820697) | |
| 574-723, gnl|dasNov1|scaffold_13536 (24277-24113) | |
| 574-723, gnl|echTel1|scaffold_210592 (12217-12381) | |
| 574-723, gnl|fr1|chrUn (55724916-55724759) | |
| 574-723, gnl|galGal2|chr2 (133823180-133823033) | |
| 574-723, gnl|hg17|chr8 (117737272-117737436) | |
| 574-723, gnl|Hg17|chr8 (117737425-117737276) | |
| 574-723, gnl|loxAfr1|scaffold_152975 (145-282) | |
| 574-723, gnl|mm7|chr15 (51850749-51850913) | |
| 574-723, gnl|Mm7|chr15 (51850902-51850753) | |
| 574-723, gnl|monDom2|scaffold_3 (40243604-40243440) | |
| 574-723, gnl|oryCun1|scaffold_34747 (887-1024) | |
| 574-723, gnl|panTro1|chr7 (120394088-120394252) | |
| 574-723, gnl|rheMac2|chr8 (119170473-119170637) | |
| 574-723, gnl|rn3|chr7 (88101589-88101753) | |
| 574-723, gnl|tetNig1|chr8 (3519321-3519161) | |
| 574-723, gnl|xenTro1|scaffold_301 (319672-319819) | |
| 975-1200, gnl|bosTau2|chr14 (29861121-29861344) | |
| 975-1200, gnl|Hg17|chr8 (117726526-117726258) | |
| 975-1200, gnl|Mm7|chr15 (51841193-51840947) |
| Expressed library(ies): 86 entry(ies) | More info |
| Expressed library(ies): 86 entry(ies) | Help | Less info |
| isp (2.40601) | |
| gul (2.30865) | |
| cut (2.20901) | |
| tbr (2.00432) | |
| sto (1.79824) | |
| fat (1.6217) | |
| mgp (1.61476) | |
| aor (1.56219) | |
| elu (1.54143) | |
| thg (1.52149) | |
| cmu (1.49115) | |
| bfe (1.34872) | |
| bla (1.24347) | |
| clu (1.19646) | |
| ova (1.16219) | |
| ese (1.13852) | |
| che (1.09051) | |
| ssp (1.08416) | |
| cty (1.0408) | |
| rec (1.03842) | |
| cbl (1.03318) | |
| pro (1.02407) | |
| lin (1.01922) | |
| spl (1.00229) | |
| vin (0.997672) | |
| lyg (0.931718) | |
| med (0.930016) | |
| sug (0.891039) | |
| ski (0.880411) | |
| pgl (0.829384) | |
| cje (0.826173) | |
| fce (0.814775) | |
| ecc (0.805246) | |
| col (0.780031) | |
| tra (0.738552) | |
| liv (0.731422) | |
| sag (0.730861) | |
| cbe (0.717703) | |
| hyp (0.714184) | |
| pan (0.707881) | |
| csk (0.70373) | |
| ece (0.687916) | |
| jca (0.683761) | |
| mcp (0.682594) | |
| ldo (0.679018) | |
| cki (0.660939) | |
| ret (0.643666) | |
| nlu (0.575043) | |
| lnt (0.569233) | |
| ste (0.540833) | |
| fbs (0.526039) | |
| duo (0.518403) | |
| eye (0.511509) | |
| nco (0.485201) | |
| mga (0.480615) | |
| spc (0.453463) | |
| hea (0.408998) | |
| fli (0.405762) | |
| ute (0.398353) | |
| eje (0.395335) | |
| mgm (0.360685) | |
| fty (0.351679) | |
| ill (0.351185) | |
| sin (0.349895) | |
| fhi (0.339155) | |
| sme (0.305437) | |
| nbm (0.297974) | |
| cte (0.29274) | |
| cst (0.280073) | |
| cga (0.279096) | |
| nmm (0.265604) | |
| eep (0.245128) | |
| mas (0.210305) | |
| tes (0.207814) | |
| jej (0.197844) | |
| nep (0.183925) | |
| csp (0.161186) | |
| fco (0.157208) | |
| ctl (0.153069) | |
| eli (0.151814) | |
| cag (0.151194) | |
| pty (0.142714) | |
| nca (0.136874) | |
| pla (0.133672) | |
| kid (0.129735) | |
| cly (0.120642) |
| Expressed library(ies): 86 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| isp (2.40601) | |
| gul (2.30865) | |
| cut (2.20901) | |
| tbr (2.00432) | |
| sto (1.79824) | |
| fat (1.6217) | |
| mgp (1.61476) | |
| aor (1.56219) | |
| elu (1.54143) | |
| thg (1.52149) | |
| cmu (1.49115) | |
| bfe (1.34872) | |
| bla (1.24347) | |
| clu (1.19646) | |
| ova (1.16219) | |
| ese (1.13852) | |
| che (1.09051) | |
| ssp (1.08416) | |
| cty (1.0408) | |
| rec (1.03842) | |
| cbl (1.03318) | |
| pro (1.02407) | |
| lin (1.01922) | |
| spl (1.00229) | |
| vin (0.997672) | |
| lyg (0.931718) | |
| med (0.930016) | |
| sug (0.891039) | |
| ski (0.880411) | |
| pgl (0.829384) | |
| cje (0.826173) | |
| fce (0.814775) | |
| ecc (0.805246) | |
| col (0.780031) | |
| tra (0.738552) | |
| liv (0.731422) | |
| sag (0.730861) | |
| cbe (0.717703) | |
| hyp (0.714184) | |
| pan (0.707881) | |
| csk (0.70373) | |
| ece (0.687916) | |
| jca (0.683761) | |
| mcp (0.682594) | |
| ldo (0.679018) | |
| cki (0.660939) | |
| ret (0.643666) | |
| nlu (0.575043) | |
| lnt (0.569233) | |
| ste (0.540833) | |
| fbs (0.526039) | |
| duo (0.518403) | |
| eye (0.511509) | |
| nco (0.485201) | |
| mga (0.480615) | |
| spc (0.453463) | |
| hea (0.408998) | |
| fli (0.405762) | |
| ute (0.398353) | |
| eje (0.395335) | |
| mgm (0.360685) | |
| fty (0.351679) | |
| ill (0.351185) | |
| sin (0.349895) | |
| fhi (0.339155) | |
| sme (0.305437) | |
| nbm (0.297974) | |
| cte (0.29274) | |
| cst (0.280073) | |
| cga (0.279096) | |
| nmm (0.265604) | |
| eep (0.245128) | |
| mas (0.210305) | |
| tes (0.207814) | |
| jej (0.197844) | |
| nep (0.183925) | |
| csp (0.161186) | |
| fco (0.157208) | |
| ctl (0.153069) | |
| eli (0.151814) | |
| cag (0.151194) | |
| pty (0.142714) | |
| nca (0.136874) | |
| pla (0.133672) | |
| kid (0.129735) | |
| cly (0.120642) |