Non-Coding RNA Search

Ss1.1-LyN1-MLN01D010067.5

Sequence:


               
               TAAGTGTAGTATTTCTGAATGTGCCTTTGTGAGCTCAGAGACCATCTGTTTTAGGAAGAA
CCTCTGCATTGGGAGAAAACAGGCGGTCAGCTTAGTCTTTAGGGAAGTCAGCTTTTCTTC
AGGAGTCCGCGGGGGCGTCTGTGGAGTTTTCATTTGCATCAGTATTGCACAGTGCGGAGT
CGCAGGGAAGAGGGTCTGGGCTTGGGGGAGGGGACGGTGCACAGATGACAGAGACCAGGT
TAGTCCAGGGGGTGCGGCTGAACGTAGCCGCCTGCATCGCCTAGTTTTCTCCGTGTCTGC
TTGTGCGCGTGCGTGGCCATGGCTGTCCTGGTTTTCGTTTTTCTATAAGCACTGGAGAAT
TGAAGTGCGGTGATGTCTGTGACACATCTGCACAAGTCCAGAAGGCGTCTTCTAGCCCCT
GCCTTTCTACCCTGCCGGGCTGTGTCCTGAAAAGGCAGTTCTTTTCCCAAATGGACATCC
CATGGGGTGGCCGTGTATGCAAACAGGGTATTATTACACACAAGGAAAGGCTTTGGAAAG
AATAAGATTGAAGTGTCTGAGAAAGAAAAGAGAAAACTCTGAAATCCTAGTTTATTTCTT
CAAAACTGTTAGGGTCAAACACAGAAATCTGCAGTGTCTCTTTGTTTTATGTCTGTTTTA
AGCGATTCCACCGCTTGTCCCCACTCCCTGTCTTCTAAAGAGATAGCAAGTGAATGCCAA
GGGCCGTTTCCGTAATTCCTCAGAACTCCTCCAAGAGGGACACAGTCCCTCCGCCAGATT
CCTTCAGCTTCGTTCAGGAAGACACAGGGAGGAGAGGGGCTGCAGCTTCTTCCCAGGGCT
TTCACGCTCGTTCCTCTCTAATGGCCTTGAAATGTATCATTATGCAAATGTGAATTTTCA
TACCGAATTTAAGAAGAGGTTGTTGGACTTTTCTTTTTTCAGGAAAAAAACAAAAAGGTC
CCACGTGCAGTCATTCATTCATGGCTTCTTTATTTTGTAACGTGAATTGTAACTATGCAT
TCTGCAACGGGGGGAGGAGACGGCAGACGGGAAGGAGGTAGCTTTGCATCTTGTTCTACG
GTTTCTGTGTCCATGGTGTCCCCACGTCCTGGCAGGGAAGGGGGTCAAGAGCAGGAAGCG
GCAGGGTGGCGAGGTCGGCACAGCGAGGTAGCAAGAGCCTGTGGCTCGTGCCCGCCAGTG
AGGGACAGGCTCCGTCCCAGCCATCAGGGTCAACCAGGTGCAGCAGGGGGGCTCCCACGC
GCCAGTCTTCTCCGGAGAAAAGTGTCATCCCTGCCTGAATTCAGAACCCTTTCAAGCTCA
GGAAACCAGCCTCACCTGTGCTGCCCTTCATCTTTATGTCAGTTTCAGAAGCTCCTCCTT
GCTCCCGTTTTCATTTTTCTTTCTTCTTCCTAACTCGCTTTTAAGTGAACTGAATGACAA
GCAAACTCTTGCTCTGTGGGGAAGAGGCCTGGTTGCTTGACAGGCAGCAAAGCAGTCTCT
TCCCCACCCACCACCCTCAGCCGGGTAACCTCTCTGCTTCCTCGGCAGTCGCTCAGCCGT
GTGGCTGGTGAGCAGTGAGGTGCCTGATGGGAGCCCACAGCCTCCCCTTTGTCGGTCTTG
CCTGTGGTGAACCGTGGCACCTGCATTGCTCTGGTCTAGGCATTATTTGCAACACTCAGT
GTCGTAAGCAAGAGGTGGCTCTGTCCGTCGCCAGTGTTCCCACGCAGCAGTTTTCGTTGT
TGACGTTCACAGTACTGTAACGAGTAACAGACTTGATCGCTGTCTCCTCGCGCCCCTGCG
ACGCTGCACGGGCACGAACTTATCAGGGTTCCCATCTGTTAGATTGCCTTTAGACAAAAA
ACAAAAAACAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAGTGTAGTATTTCTGAATGTGCCTTTGTGAGCTCAGAGACCATCTGTTTTAGGAAGAA
CCTCTGCATTGGGAGAAAACAGGCGGTCAGCTTAGTCTTTAGGGAAGTCAGCTTTTCTTC
AGGAGTCCGCGGGGGCGTCTGTGGAGTTTTCATTTGCATCAGTATTGCACAGTGCGGAGT
CGCAGGGAAGAGGGTCTGGGCTTGGGGGAGGGGACGGTGCACAGATGACAGAGACCAGGT
TAGTCCAGGGGGTGCGGCTGAACGTAGCCGCCTGCATCGCCTAGTTTTCTCCGTGTCTGC
TTGTGCGCGTGCGTGGCCATGGCTGTCCTGGTTTTCGTTTTTCTATAAGCACTGGAGAAT
TGAAGTGCGGTGATGTCTGTGACACATCTGCACAAGTCCAGAAGGCGTCTTCTAGCCCCT
GCCTTTCTACCCTGCCGGGCTGTGTCCTGAAAAGGCAGTTCTTTTCCCAAATGGACATCC
CATGGGGTGGCCGTGTATGCAAACAGGGTATTATTACACACAAGGAAAGGCTTTGGAAAG
AATAAGATTGAAGTGTCTGAGAAAGAAAAGAGAAAACTCTGAAATCCTAGTTTATTTCTT
CAAAACTGTTAGGGTCAAACACAGAAATCTGCAGTGTCTCTTTGTTTTATGTCTGTTTTA
AGCGATTCCACCGCTTGTCCCCACTCCCTGTCTTCTAAAGAGATAGCAAGTGAATGCCAA
GGGCCGTTTCCGTAATTCCTCAGAACTCCTCCAAGAGGGACACAGTCCCTCCGCCAGATT
CCTTCAGCTTCGTTCAGGAAGACACAGGGAGGAGAGGGGCTGCAGCTTCTTCCCAGGGCT
TTCACGCTCGTTCCTCTCTAATGGCCTTGAAATGTATCATTATGCAAATGTGAATTTTCA
TACCGAATTTAAGAAGAGGTTGTTGGACTTTTCTTTTTTCAGGAAAAAAACAAAAAGGTC
CCACGTGCAGTCATTCATTCATGGCTTCTTTATTTTGTAACGTGAATTGTAACTATGCAT
TCTGCAACGGGGGGAGGAGACGGCAGACGGGAAGGAGGTAGCTTTGCATCTTGTTCTACG
GTTTCTGTGTCCATGGTGTCCCCACGTCCTGGCAGGGAAGGGGGTCAAGAGCAGGAAGCG
GCAGGGTGGCGAGGTCGGCACAGCGAGGTAGCAAGAGCCTGTGGCTCGTGCCCGCCAGTG
AGGGACAGGCTCCGTCCCAGCCATCAGGGTCAACCAGGTGCAGCAGGGGGGCTCCCACGC
GCCAGTCTTCTCCGGAGAAAAGTGTCATCCCTGCCTGAATTCAGAACCCTTTCAAGCTCA
GGAAACCAGCCTCACCTGTGCTGCCCTTCATCTTTATGTCAGTTTCAGAAGCTCCTCCTT
GCTCCCGTTTTCATTTTTCTTTCTTCTTCCTAACTCGCTTTTAAGTGAACTGAATGACAA
GCAAACTCTTGCTCTGTGGGGAAGAGGCCTGGTTGCTTGACAGGCAGCAAAGCAGTCTCT
TCCCCACCCACCACCCTCAGCCGGGTAACCTCTCTGCTTCCTCGGCAGTCGCTCAGCCGT
GTGGCTGGTGAGCAGTGAGGTGCCTGATGGGAGCCCACAGCCTCCCCTTTGTCGGTCTTG
CCTGTGGTGAACCGTGGCACCTGCATTGCTCTGGTCTAGGCATTATTTGCAACACTCAGT
GTCGTAAGCAAGAGGTGGCTCTGTCCGTCGCCAGTGTTCCCACGCAGCAGTTTTCGTTGT
TGACGTTCACAGTACTGTAACGAGTAACAGACTTGATCGCTGTCTCCTCGCGCCCCTGCG
ACGCTGCACGGGCACGAACTTATCAGGGTTCCCATCTGTTAGATTGCCTTTAGACAAAAA
ACAAAAAACAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1-154, + strand, RNAz p=0.953685

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-154, + strand, RNAz p=0.953685

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-423, gnl|bosTau2|chr5 (70159650-70159221)
               

               
               1-423, gnl|Hg17|chr22 (39051203-39051634)
               

               
               1-423, gnl|Mm7|chr15 (81021200-81021581)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-423, gnl|bosTau2|chr5 (70159650-70159221)
               

               
               1-423, gnl|Hg17|chr22 (39051203-39051634)
               

               
               1-423, gnl|Mm7|chr15 (81021200-81021581)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               elu (0.385356)
               

               
               fli (0.202881)
               

               
               cje (0.165235)
               

               
               clu (0.119646)
               

               
               cbl (0.114797)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               fli (0.202881)
               

               
               cje (0.165235)
               

               
               clu (0.119646)
               

               
               cbl (0.114797)

	1-423, gnl\|bosTau2\|chr5 (70159650-70159221)
	1-423, gnl\|Hg17\|chr22 (39051203-39051634)
	1-423, gnl\|Mm7\|chr15 (81021200-81021581)

	elu (0.385356)
	fli (0.202881)
	cje (0.165235)
	clu (0.119646)
	cbl (0.114797)