Ss1.1-LyN1-MLN01D010072.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGGCGGCTGCGAACCCGGGCCGGGGGGGACGGCGCCCACCAGGAGCGAGTCGCGGCGGC TGCGAACCCGGGCCGGGGGGGACGGCGCCCACCAGGAGCGCCCCCCACTCCCAGGCCAGG CCACCCCGGCGGACCGGGTCCCCGCGCGCCCAGGCGAGGCACTGGGCTCCCTCTGCTCCC CGTGGGCCGCTCCCCGCGTGGGGCCACTGCCCCCGGCCCCCGCCATGGTGCGGATTTCAA AGCCCAAGACGTTTCAGGCCTACTTGGATGATTGTCACCGGAGGTATAGCTGTGCCCACT GCCGTGCTCACCTGGCCAACCACGACGACCTCATCTCCAAGTCCTTTCAGGGCAGCCAGG GGCGTGCCTACCTCTTCAACTCTGTGGTGAACGTGGGCTGCGGGCCAGCCGAGGAGCGGG TGCTGCTGACGGGCCTCCATGCTGTCGCTGACATCCACTGCGAAAACTGCAAGACCACTT TGGGCTGGAAATATGAACAGGCCTTCGAGAGCAGCCAGAAGTACAAAGAGGGGAAGTACA TCATTGAACTCAACCACATGATCAAAGACAATGGCTGGGACTGACCCTGGCTCCTGACGC CTGTGGCTCCAGCCCGGCCTGGCCGCCAGGGGGCGCCACGGGCTTGCCTCCATCCGAAGG GAGCTCTGGACCTCAGGGCCCCTGCCGAGGAAGGATCCTGTACATATATTTTATTGCATG CACTGTGACCTTGGTGGGAGTTCAGAAGGTGGACAAGGTGGACGACACCCCCGCACCTCC CTGCGATCTGGCTGGCTTGGATCTCGTTTTTAACCCCTTCCTGCCCTGCCTGCCCTATAG ACATGGCCTGTGTGCTGCTCTCTTGGCCCCAGTGCGCCATCTGCCCTGTGAACTTCTCCT CCCACCGGGCCCCTCTTACCCCACGCGTGTCTGCTCCCCTTGTTCTGTAGCGTTTGTACA TAATAAAACAATGAAGTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGGCGGCTGCGAACCCGGGCCGGGGGGGACGGCGCCCACCAGGAGCGAGTCGCGGCGGC TGCGAACCCGGGCCGGGGGGGACGGCGCCCACCAGGAGCGCCCCCCACTCCCAGGCCAGG CCACCCCGGCGGACCGGGTCCCCGCGCGCCCAGGCGAGGCACTGGGCTCCCTCTGCTCCC CGTGGGCCGCTCCCCGCGTGGGGCCACTGCCCCCGGCCCCCGCCATGGTGCGGATTTCAA AGCCCAAGACGTTTCAGGCCTACTTGGATGATTGTCACCGGAGGTATAGCTGTGCCCACT GCCGTGCTCACCTGGCCAACCACGACGACCTCATCTCCAAGTCCTTTCAGGGCAGCCAGG GGCGTGCCTACCTCTTCAACTCTGTGGTGAACGTGGGCTGCGGGCCAGCCGAGGAGCGGG TGCTGCTGACGGGCCTCCATGCTGTCGCTGACATCCACTGCGAAAACTGCAAGACCACTT TGGGCTGGAAATATGAACAGGCCTTCGAGAGCAGCCAGAAGTACAAAGAGGGGAAGTACA TCATTGAACTCAACCACATGATCAAAGACAATGGCTGGGACTGACCCTGGCTCCTGACGC CTGTGGCTCCAGCCCGGCCTGGCCGCCAGGGGGCGCCACGGGCTTGCCTCCATCCGAAGG GAGCTCTGGACCTCAGGGCCCCTGCCGAGGAAGGATCCTGTACATATATTTTATTGCATG CACTGTGACCTTGGTGGGAGTTCAGAAGGTGGACAAGGTGGACGACACCCCCGCACCTCC CTGCGATCTGGCTGGCTTGGATCTCGTTTTTAACCCCTTCCTGCCCTGCCTGCCCTATAG ACATGGCCTGTGTGCTGCTCTCTTGGCCCCAGTGCGCCATCTGCCCTGTGAACTTCTCCT CCCACCGGGCCCCTCTTACCCCACGCGTGTCTGCTCCCCTTGTTCTGTAGCGTTTGTACA TAATAAAACAATGAAGTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 49-159, gnl|bosTau2|chr25 (25421533-25421423) | |
| 49-159, gnl|Hg17|chr16 (30015028-30014918) | |
| 49-159, gnl|Mm7|chr7 (122873553-122873662) | |
| 371-495, gnl|bosTau2|chr17 (45462405-45462282) | |
| 371-495, gnl|canFam2|chr26 (34034306-34034438) | |
| 371-495, gnl|danRer3|chr5 (3625895-3625766) | |
| 371-495, gnl|dasNov1|scaffold_37512 (4019-3884) | |
| 371-495, gnl|echTel1|scaffold_279930 (55065-54933) | |
| 371-495, gnl|fr1|chrUn (237441332-237441201) | |
| 371-495, gnl|galGal2|chr15 (544395-544269) | |
| 371-495, gnl|hg17|chr22 (20382205-20382338) | |
| 371-495, gnl|Hg17|chr22 (20382339-20382212) | |
| 371-495, gnl|loxAfr1|scaffold_9112 (20610-20742) | |
| 371-495, gnl|mm7|chr16 (16631919-16631786) | |
| 371-495, gnl|Mm7|chr16 (16631779-16631910) | |
| 371-495, gnl|monDom2|scaffold_112 (3583711-3583839) | |
| 371-495, gnl|oryCun1|scaffold_215058 (13639-13770) | |
| 371-495, gnl|panTro1|chr23 (20409573-20409706) | |
| 371-495, gnl|rheMac2|chr15 (76057421-76057315) | |
| 371-495, gnl|rn3|chr11 (85972987-85973120) | |
| 371-495, gnl|tetNig1|chr12 (3755439-3755570) | |
| 371-495, gnl|xenTro1|scaffold_118 (276833-276705) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 49-159, gnl|bosTau2|chr25 (25421533-25421423) | |
| 49-159, gnl|Hg17|chr16 (30015028-30014918) | |
| 49-159, gnl|Mm7|chr7 (122873553-122873662) | |
| 371-495, gnl|bosTau2|chr17 (45462405-45462282) | |
| 371-495, gnl|canFam2|chr26 (34034306-34034438) | |
| 371-495, gnl|danRer3|chr5 (3625895-3625766) | |
| 371-495, gnl|dasNov1|scaffold_37512 (4019-3884) | |
| 371-495, gnl|echTel1|scaffold_279930 (55065-54933) | |
| 371-495, gnl|fr1|chrUn (237441332-237441201) | |
| 371-495, gnl|galGal2|chr15 (544395-544269) | |
| 371-495, gnl|hg17|chr22 (20382205-20382338) | |
| 371-495, gnl|Hg17|chr22 (20382339-20382212) | |
| 371-495, gnl|loxAfr1|scaffold_9112 (20610-20742) | |
| 371-495, gnl|mm7|chr16 (16631919-16631786) | |
| 371-495, gnl|Mm7|chr16 (16631779-16631910) | |
| 371-495, gnl|monDom2|scaffold_112 (3583711-3583839) | |
| 371-495, gnl|oryCun1|scaffold_215058 (13639-13770) | |
| 371-495, gnl|panTro1|chr23 (20409573-20409706) | |
| 371-495, gnl|rheMac2|chr15 (76057421-76057315) | |
| 371-495, gnl|rn3|chr11 (85972987-85973120) | |
| 371-495, gnl|tetNig1|chr12 (3755439-3755570) | |
| 371-495, gnl|xenTro1|scaffold_118 (276833-276705) |
| Expressed library(ies): 28 entry(ies) | More info |
| Expressed library(ies): 28 entry(ies) | Help | Less info |
| col (0.390016) | |
| eru (0.360144) | |
| mcp (0.341297) | |
| fhi (0.339155) | |
| hyp (0.285673) | |
| cga (0.279096) | |
| med (0.232504) | |
| ecc (0.23007) | |
| fcc (0.197785) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| eye (0.170503) | |
| nco (0.161734) | |
| csp (0.161186) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| cov (0.132153) | |
| eep (0.122564) | |
| cly (0.120642) | |
| clu (0.119646) | |
| ebs (0.118301) | |
| jca (0.11396) | |
| jej (0.0989218) | |
| eje (0.0988338) |
| Expressed library(ies): 28 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| col (0.390016) | |
| eru (0.360144) | |
| mcp (0.341297) | |
| fhi (0.339155) | |
| hyp (0.285673) | |
| cga (0.279096) | |
| med (0.232504) | |
| ecc (0.23007) | |
| fcc (0.197785) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| eye (0.170503) | |
| nco (0.161734) | |
| csp (0.161186) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| cov (0.132153) | |
| eep (0.122564) | |
| cly (0.120642) | |
| clu (0.119646) | |
| ebs (0.118301) | |
| jca (0.11396) | |
| jej (0.0989218) | |
| eje (0.0988338) |