Non-Coding RNA Search

Ss1.1-LyN1-MLN01D010085.5

Sequence:


               
               TCGGAAGGAGGCATGGCGGCCGCCGGGGCTGCGGCTACGGACTTAGAGGTGGTCCGCGGC
AAGCGCGCCGCACTCTTCTTCGCTGCGGTGGCCATCGTGCTGGGGCTGCCGCTCTGGTGG
AAGACCACGGAGACCTATCGGGCCTCGTTGCCTTACTCTGAGATCAGTGGGCTGAATTCC
TTGCAGCTCCGGCTCATGGTGCCCGTCACTGTCGTGTTTACCCAGGAGTCAGTGCCATTG
GACGACCAGGAGAAGCTGCCCTTCACCGTTGTGCATGAAAGAGAGATCCCTCTGAAGTAC
AAACTGAAAATCAAATGCCGTTTCCAGAAGGCCTATCGGAGGGCTTTGGACCATGAGGAG
GAGGCCCTCTCATCGGGCAGTGTACAAGAGGCTGAAACCATGTTAGCTGAGCCGCTGGAG
CAAGCCGAGGGCTCCCTGACAGTGTATGTGATCTCAGAGCACTCCCCACTTCTCCCCAAG
GACATGATGAGCTACATCGGGCCCAAGAGGACCGCGGTCGTGCGGGGGATCACGCACCGG
GAGGCCTTCAACATCATCGGCCGCCGCATCATCCAGGTCGCCCAGGCCATGTCTCTGACG
GAGGACGTGCTCGCTGCGGCTCTGGCCGACCACCTTCCAGAGGACAAGTGGAGCTCTGAT
AAGAGGCGGCCCCTCAAGTCCAGCTTGGGCTACGAAATCACCTTCAGTTTACTCAACCCT
GACCCCAAGTCCCATGACGTCCACTGGGACATTGAGGGGGCTGTCCGGCGCTTTGTGCAG
CCCTTCCTGAATGCCCTCAGTGCTGCAGGCAACTTCTCAGTGGACTCTCAGATCCTTTAC
TATGCCATGTTGGGGGTAAACCCCCGCTTCGACCCGGCTTCCTCCAGCTACTACTTGGCC
ACGCACAGCCTCCCCCATGTCATCAACCCAGTGGAGTCTCGGCTGGGTGAGCTCCCGAGG
ATGCAGGCCTTCTGTTAGGCTGGGGAGGAGCCCTGGGGACTCAGCCTGGGGTGAGAGGCA
GGCTGTTTTATAGCGGTGGTTCCCAGGTTGGCTTTGTCTGAGGAAGTACCCAGCATGTAG
GCTCCTTTTTCATGAGAGTCTGTTGACACCTCCACCTCCACGCTGTCACATCCAAAAGCA
TTTGTTAAACATTTCCAGCACTTTGTATAAACGAATGGCTGGGCTGAGTCTCCTCCCTGC
AAGCCAGCCAGCAAAGACATGGCCGCTCAAGTAGGAAAGACAGCAGCCAGAGTTGTTGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGGAAGGAGGCATGGCGGCCGCCGGGGCTGCGGCTACGGACTTAGAGGTGGTCCGCGGC
AAGCGCGCCGCACTCTTCTTCGCTGCGGTGGCCATCGTGCTGGGGCTGCCGCTCTGGTGG
AAGACCACGGAGACCTATCGGGCCTCGTTGCCTTACTCTGAGATCAGTGGGCTGAATTCC
TTGCAGCTCCGGCTCATGGTGCCCGTCACTGTCGTGTTTACCCAGGAGTCAGTGCCATTG
GACGACCAGGAGAAGCTGCCCTTCACCGTTGTGCATGAAAGAGAGATCCCTCTGAAGTAC
AAACTGAAAATCAAATGCCGTTTCCAGAAGGCCTATCGGAGGGCTTTGGACCATGAGGAG
GAGGCCCTCTCATCGGGCAGTGTACAAGAGGCTGAAACCATGTTAGCTGAGCCGCTGGAG
CAAGCCGAGGGCTCCCTGACAGTGTATGTGATCTCAGAGCACTCCCCACTTCTCCCCAAG
GACATGATGAGCTACATCGGGCCCAAGAGGACCGCGGTCGTGCGGGGGATCACGCACCGG
GAGGCCTTCAACATCATCGGCCGCCGCATCATCCAGGTCGCCCAGGCCATGTCTCTGACG
GAGGACGTGCTCGCTGCGGCTCTGGCCGACCACCTTCCAGAGGACAAGTGGAGCTCTGAT
AAGAGGCGGCCCCTCAAGTCCAGCTTGGGCTACGAAATCACCTTCAGTTTACTCAACCCT
GACCCCAAGTCCCATGACGTCCACTGGGACATTGAGGGGGCTGTCCGGCGCTTTGTGCAG
CCCTTCCTGAATGCCCTCAGTGCTGCAGGCAACTTCTCAGTGGACTCTCAGATCCTTTAC
TATGCCATGTTGGGGGTAAACCCCCGCTTCGACCCGGCTTCCTCCAGCTACTACTTGGCC
ACGCACAGCCTCCCCCATGTCATCAACCCAGTGGAGTCTCGGCTGGGTGAGCTCCCGAGG
ATGCAGGCCTTCTGTTAGGCTGGGGAGGAGCCCTGGGGACTCAGCCTGGGGTGAGAGGCA
GGCTGTTTTATAGCGGTGGTTCCCAGGTTGGCTTTGTCTGAGGAAGTACCCAGCATGTAG
GCTCCTTTTTCATGAGAGTCTGTTGACACCTCCACCTCCACGCTGTCACATCCAAAAGCA
TTTGTTAAACATTTCCAGCACTTTGTATAAACGAATGGCTGGGCTGAGTCTCCTCCCTGC
AAGCCAGCCAGCAAAGACATGGCCGCTCAAGTAGGAAAGACAGCAGCCAGAGTTGTTGAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|14456613|dbj|BAB60853.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|14456613|dbj|BAB60853.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               558-677, + strand, RNAz p=0.678714

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               558-677, + strand, RNAz p=0.678714

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               45-186, gnl|bosTau2|chr19 (13569206-13569065)
               

               
               45-186, gnl|Hg17|chr17 (23922335-23922194)
               

               
               45-186, gnl|Mm7|chr11 (78410305-78410446)
               


               
               479-689, gnl|bosTau2|chr19 (13564545-13564335)
               

               
               479-689, gnl|Hg17|chr17 (23912776-23912566)
               

               
               479-689, gnl|Mm7|chr11 (78417000-78417210)
               


               
               829-1171, gnl|bosTau2|chr19 (13562625-13562284)
               

               
               829-1171, gnl|Hg17|chr17 (23909738-23909071)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               45-186, gnl|bosTau2|chr19 (13569206-13569065)
               

               
               45-186, gnl|Hg17|chr17 (23922335-23922194)
               

               
               45-186, gnl|Mm7|chr11 (78410305-78410446)
               


               
               479-689, gnl|bosTau2|chr19 (13564545-13564335)
               

               
               479-689, gnl|Hg17|chr17 (23912776-23912566)
               

               
               479-689, gnl|Mm7|chr11 (78417000-78417210)
               


               
               829-1171, gnl|bosTau2|chr19 (13562625-13562284)
               

               
               829-1171, gnl|Hg17|chr17 (23909738-23909071)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	45-186, gnl\|bosTau2\|chr19 (13569206-13569065)
	45-186, gnl\|Hg17\|chr17 (23922335-23922194)
	45-186, gnl\|Mm7\|chr11 (78410305-78410446)

	479-689, gnl\|bosTau2\|chr19 (13564545-13564335)
	479-689, gnl\|Hg17\|chr17 (23912776-23912566)
	479-689, gnl\|Mm7\|chr11 (78417000-78417210)

	829-1171, gnl\|bosTau2\|chr19 (13562625-13562284)
	829-1171, gnl\|Hg17\|chr17 (23909738-23909071)