Ss1.1-LyN1-MLN01D020101.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AATTGTGAAGGGCGGAGCGGTAACATGGCGGCGCCGGGAGCTGGCAATCCTGTGGATTCT AAGAGTGGAAAGGCCCCCGTGGCTCAGCGCATCGACCCGACTCGGGAGAAACTGACTCCT GAGCAGCTGCAATTCATGCGGCAGGTGCAGCTCGCCCAGTGGCAGAAGACGCTGCCACAG CGGCGGACCCGGAACATCGTGACCGGCCTGGGCATCGGGGCGCTGGTGTTGGCAATTTAT GGTTACACCTTCTACTCGGTGTCCCAGGAGCGTTTCTTGGATGAGCTGGAGGATGAGGCC AAAGCTGCTCGAGCCCGAGCTCTGGAAAGGGCATCAGGACACTGATCCACATGGGCATGG TGCATCTCCAACCTGCTGGAGCCCCTTCACACGATGACTGATGCCCCGTGACTCGGTAGA AGTTGAAGCCTGCTCACAGCGTTGCTGGCCTTCTTACCAGTTTTGAACGATGGTAGAGCC CAAGTAGCCAGGGATTGTGCATTTGGCCATTGTCAAGGGAACGTGCCCACCTCCCAGTGT GTGTGGACACTGACTCCTAATTTGTTTCCTTGTTTGAGGTGTCCGACCTTGACTTTGACT TTTCCCAGTCTTTCTCACTTTGTTGTTTAACCCCTTCTCCTCCCAGGTGCTGGCAGGGAG GTCAGAGTAGAAGAGGTGGGCTCTTATGGGGGTGGGTGTGGCAGCTCTGCAATGTTGGAG CCTAAGGTGGAAGATGGGGTCAGGTTGAGAATAATAAACTGAGTCATCTCTCTGAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AATTGTGAAGGGCGGAGCGGTAACATGGCGGCGCCGGGAGCTGGCAATCCTGTGGATTCT AAGAGTGGAAAGGCCCCCGTGGCTCAGCGCATCGACCCGACTCGGGAGAAACTGACTCCT GAGCAGCTGCAATTCATGCGGCAGGTGCAGCTCGCCCAGTGGCAGAAGACGCTGCCACAG CGGCGGACCCGGAACATCGTGACCGGCCTGGGCATCGGGGCGCTGGTGTTGGCAATTTAT GGTTACACCTTCTACTCGGTGTCCCAGGAGCGTTTCTTGGATGAGCTGGAGGATGAGGCC AAAGCTGCTCGAGCCCGAGCTCTGGAAAGGGCATCAGGACACTGATCCACATGGGCATGG TGCATCTCCAACCTGCTGGAGCCCCTTCACACGATGACTGATGCCCCGTGACTCGGTAGA AGTTGAAGCCTGCTCACAGCGTTGCTGGCCTTCTTACCAGTTTTGAACGATGGTAGAGCC CAAGTAGCCAGGGATTGTGCATTTGGCCATTGTCAAGGGAACGTGCCCACCTCCCAGTGT GTGTGGACACTGACTCCTAATTTGTTTCCTTGTTTGAGGTGTCCGACCTTGACTTTGACT TTTCCCAGTCTTTCTCACTTTGTTGTTTAACCCCTTCTCCTCCCAGGTGCTGGCAGGGAG GTCAGAGTAGAAGAGGTGGGCTCTTATGGGGGTGGGTGTGGCAGCTCTGCAATGTTGGAG CCTAAGGTGGAAGATGGGGTCAGGTTGAGAATAATAAACTGAGTCATCTCTCTGAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 7-238, gnl|bosTau2|chr19 (38939964-38940195) | |
| 7-238, gnl|canFam2|chr20 (41044341-41044165) | |
| 7-238, gnl|canFam2|chr9 (23541186-23540988) | |
| 7-238, gnl|echTel1|scaffold_233395 (5840-6038) | |
| 7-238, gnl|echTel1|scaffold_233395 (5851-6027) | |
| 7-238, gnl|fr1|chrUn (50000881-50000682) | |
| 7-238, gnl|galGal2|chr27_random (146974-146787) | |
| 7-238, gnl|hg17|chr12 (32706050-32706201) | |
| 7-238, gnl|hg17|chr17 (38203999-38204197) | |
| 7-238, gnl|Hg17|chr17 (38204243-38204012) | |
| 7-238, gnl|loxAfr1|scaffold_5870 (36839-37037) | |
| 7-238, gnl|loxAfr1|scaffold_5870 (36850-37026) | |
| 7-238, gnl|mm7|chr11 (101387740-101387938) | |
| 7-238, gnl|mm7|chr11 (101387751-101387927) | |
| 7-238, gnl|Mm7|chr11 (101387984-101387753) | |
| 7-238, gnl|monDom2|scaffold_18 (53347520-53347712) | |
| 7-238, gnl|oryCun1|scaffold_104315 (4172-4370) | |
| 7-238, gnl|oryCun1|scaffold_117754 (3756-3582) | |
| 7-238, gnl|panTro1|chr19 (41391575-41391773) | |
| 7-238, gnl|panTro1|chrUn_random (34349361-34349210) | |
| 7-238, gnl|rheMac2|chr11 (32752622-32752773) | |
| 7-238, gnl|rheMac2|chr16 (52919972-52920170) | |
| 7-238, gnl|rn3|chr10 (90321867-90322065) | |
| 7-238, gnl|rn3|chr12 (9760282-9760092) | |
| 7-238, gnl|tetNig1|chr2 (834899-834707) | |
| 239-773, gnl|bosTau2|chr19 (38940532-38941066) | |
| 239-773, gnl|Hg17|chr17 (38203711-38203182) | |
| 239-773, gnl|Mm7|chr11 (101387491-101387011) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 7-238, gnl|bosTau2|chr19 (38939964-38940195) | |
| 7-238, gnl|canFam2|chr20 (41044341-41044165) | |
| 7-238, gnl|canFam2|chr9 (23541186-23540988) | |
| 7-238, gnl|echTel1|scaffold_233395 (5840-6038) | |
| 7-238, gnl|echTel1|scaffold_233395 (5851-6027) | |
| 7-238, gnl|fr1|chrUn (50000881-50000682) | |
| 7-238, gnl|galGal2|chr27_random (146974-146787) | |
| 7-238, gnl|hg17|chr12 (32706050-32706201) | |
| 7-238, gnl|hg17|chr17 (38203999-38204197) | |
| 7-238, gnl|Hg17|chr17 (38204243-38204012) | |
| 7-238, gnl|loxAfr1|scaffold_5870 (36839-37037) | |
| 7-238, gnl|loxAfr1|scaffold_5870 (36850-37026) | |
| 7-238, gnl|mm7|chr11 (101387740-101387938) | |
| 7-238, gnl|mm7|chr11 (101387751-101387927) | |
| 7-238, gnl|Mm7|chr11 (101387984-101387753) | |
| 7-238, gnl|monDom2|scaffold_18 (53347520-53347712) | |
| 7-238, gnl|oryCun1|scaffold_104315 (4172-4370) | |
| 7-238, gnl|oryCun1|scaffold_117754 (3756-3582) | |
| 7-238, gnl|panTro1|chr19 (41391575-41391773) | |
| 7-238, gnl|panTro1|chrUn_random (34349361-34349210) | |
| 7-238, gnl|rheMac2|chr11 (32752622-32752773) | |
| 7-238, gnl|rheMac2|chr16 (52919972-52920170) | |
| 7-238, gnl|rn3|chr10 (90321867-90322065) | |
| 7-238, gnl|rn3|chr12 (9760282-9760092) | |
| 7-238, gnl|tetNig1|chr2 (834899-834707) | |
| 239-773, gnl|bosTau2|chr19 (38940532-38941066) | |
| 239-773, gnl|Hg17|chr17 (38203711-38203182) | |
| 239-773, gnl|Mm7|chr11 (101387491-101387011) |
| Expressed library(ies): 40 entry(ies) | More info |
| Expressed library(ies): 40 entry(ies) | Help | Less info |
| cki (0.991408) | |
| nje (0.49776) | |
| nco (0.485201) | |
| ece (0.45861) | |
| nca (0.410621) | |
| ssp (0.406559) | |
| fty (0.351679) | |
| fbs (0.350693) | |
| cje (0.330469) | |
| cst (0.280073) | |
| fce (0.271592) | |
| ste (0.270416) | |
| cly (0.241284) | |
| col (0.195008) | |
| nlu (0.191681) | |
| cmu (0.186393) | |
| nep (0.183925) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| csp (0.161186) | |
| cag (0.151194) | |
| lun (0.150489) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| csk (0.140746) | |
| che (0.136314) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| cov (0.132153) | |
| kid (0.129735) | |
| eep (0.122564) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| med (0.116252) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| spc (0.113366) | |
| nbm (0.0993246) | |
| eje (0.0988338) | |
| ldo (0.0970026) |
| Expressed library(ies): 40 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cki (0.991408) | |
| nje (0.49776) | |
| nco (0.485201) | |
| ece (0.45861) | |
| nca (0.410621) | |
| ssp (0.406559) | |
| fty (0.351679) | |
| fbs (0.350693) | |
| cje (0.330469) | |
| cst (0.280073) | |
| fce (0.271592) | |
| ste (0.270416) | |
| cly (0.241284) | |
| col (0.195008) | |
| nlu (0.191681) | |
| cmu (0.186393) | |
| nep (0.183925) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| csp (0.161186) | |
| cag (0.151194) | |
| lun (0.150489) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| csk (0.140746) | |
| che (0.136314) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| cov (0.132153) | |
| kid (0.129735) | |
| eep (0.122564) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| med (0.116252) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| spc (0.113366) | |
| nbm (0.0993246) | |
| eje (0.0988338) | |
| ldo (0.0970026) |