Non-Coding RNA Search

Ss1.1-LyN1-MLN01D030053.5

Sequence:


               
               ATGACAGAGGTGGCAGGCAGGTCCAGCAGCCCATCTACTCTTGGTACAAAGTCTAGGGGA
AGATAATCACAGCACTGTGGCGGGGGAAGTGGGGGGAGAGAAGGGCGTGGACGGCTTCCC
TTTGTTCAGCTGGGCCACTGCCCACTTGGCAGATAGGACCTGTGGGAGCTCCCCCCCCAC
CCCGTTCCACCCTCATAAAAGAACCCCAGAGCCCTGCCCTGGGCCATTGTTGAGGCCACA
GCAGCATCATGGCAGACCGCTCCGGGCACCTGGCAGCCCTGATCCTCCTCGGAGCAGCTG
TATGTGTGGCACAGCCCCGTGGCCGGATCCTGGGTGGCCAGGAGGCCAAGTCCCACGAGA
GACCCTACATGGCATCGGTGCAGGTGAACGGCAAGCACGTGTGCGGAGGCTTCCTGGTGT
CTGAGCAGTGGGTGCTGAGTGCAGCACACTGCCTGGAGGACGTGGCCGAGGGGAAGCTGC
AGGTTCTCCTGGGTGCGCACTCCCTGTCACAGCCCGAGCCCTCGAAGCGCCTGTACGACG
TGCTCCGCGCCGTGCCCCACCCAGACAGCCAGCCTGACACCATCGACCATGATCTCCTCC
TGCTGAAGCTCTCCGAGAAGGCCGAGCTGGGCCCTGCCGTGCAGCCCCTTGCCTGGCAAC
GAGAGGACCACGAGGTTCCGGCAGGCACGCTCTGCGACGTGGCCGGCTGGGGAGTGGTCA
GTCACACTGGCCGCCGGCCCGACCGTCTGCAGCACCTGCTCCTACCGGTGCTGGACCGCA
CCACCTGCAACCTGCGCACATACCACGATGGCACCATCACCGAGCGCATGATGTGCGCGG
AGAGCAACCGTCGGGACAGCTGCAAGGGCGACTCCGGAGGCCCGCTGGTGTGCGGGGGTG
TGGCCGAGGGAGTGGTTACCTCAGGCTCCCGAGTCTGCGGCAACCGCAAGAAACCCGGCA
TCTACACGCGCTTGGCGAGCTACGTGGCCTGGATCGACGGAGTGATGGCTGACAGCGCAG
CCGCCTAAGGAGGACCTAAGGGACAGGGCGGTGGTCACCAGGCTTAGCAATAAAGTCATC
CATTCCTGCAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGACAGAGGTGGCAGGCAGGTCCAGCAGCCCATCTACTCTTGGTACAAAGTCTAGGGGA
AGATAATCACAGCACTGTGGCGGGGGAAGTGGGGGGAGAGAAGGGCGTGGACGGCTTCCC
TTTGTTCAGCTGGGCCACTGCCCACTTGGCAGATAGGACCTGTGGGAGCTCCCCCCCCAC
CCCGTTCCACCCTCATAAAAGAACCCCAGAGCCCTGCCCTGGGCCATTGTTGAGGCCACA
GCAGCATCATGGCAGACCGCTCCGGGCACCTGGCAGCCCTGATCCTCCTCGGAGCAGCTG
TATGTGTGGCACAGCCCCGTGGCCGGATCCTGGGTGGCCAGGAGGCCAAGTCCCACGAGA
GACCCTACATGGCATCGGTGCAGGTGAACGGCAAGCACGTGTGCGGAGGCTTCCTGGTGT
CTGAGCAGTGGGTGCTGAGTGCAGCACACTGCCTGGAGGACGTGGCCGAGGGGAAGCTGC
AGGTTCTCCTGGGTGCGCACTCCCTGTCACAGCCCGAGCCCTCGAAGCGCCTGTACGACG
TGCTCCGCGCCGTGCCCCACCCAGACAGCCAGCCTGACACCATCGACCATGATCTCCTCC
TGCTGAAGCTCTCCGAGAAGGCCGAGCTGGGCCCTGCCGTGCAGCCCCTTGCCTGGCAAC
GAGAGGACCACGAGGTTCCGGCAGGCACGCTCTGCGACGTGGCCGGCTGGGGAGTGGTCA
GTCACACTGGCCGCCGGCCCGACCGTCTGCAGCACCTGCTCCTACCGGTGCTGGACCGCA
CCACCTGCAACCTGCGCACATACCACGATGGCACCATCACCGAGCGCATGATGTGCGCGG
AGAGCAACCGTCGGGACAGCTGCAAGGGCGACTCCGGAGGCCCGCTGGTGTGCGGGGGTG
TGGCCGAGGGAGTGGTTACCTCAGGCTCCCGAGTCTGCGGCAACCGCAAGAAACCCGGCA
TCTACACGCGCTTGGCGAGCTACGTGGCCTGGATCGACGGAGTGATGGCTGACAGCGCAG
CCGCCTAAGGAGGACCTAAGGGACAGGGCGGTGGTCACCAGGCTTAGCAATAAAGTCATC
CATTCCTGCAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|34329339|gb|AAQ63882.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|34329339|gb|AAQ63882.1|

Aligned organism(s): 8 entry(ies)

More info

Aligned organism(s): 8 entry(ies)

Help | Less info


               
               95-252, gnl|bosTau2|chr7 (29287326-29287175)
               

               
               95-252, gnl|Hg17|chr19 (810547-810687)
               


               
               308-464, gnl|bosTau2|chr7 (29286369-29286213)
               

               
               308-464, gnl|Hg17|chr19 (811618-811774)
               

               
               308-464, gnl|Mm7|chr10 (79671473-79671629)
               


               
               607-867, gnl|bosTau2|chr7 (29285894-29285634)
               

               
               607-867, gnl|Hg17|chr19 (812697-812957)
               

               
               607-867, gnl|Mm7|chr10 (79672006-79672266)

Aligned organism(s): 8 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               95-252, gnl|bosTau2|chr7 (29287326-29287175)
               

               
               95-252, gnl|Hg17|chr19 (810547-810687)
               


               
               308-464, gnl|bosTau2|chr7 (29286369-29286213)
               

               
               308-464, gnl|Hg17|chr19 (811618-811774)
               

               
               308-464, gnl|Mm7|chr10 (79671473-79671629)
               


               
               607-867, gnl|bosTau2|chr7 (29285894-29285634)
               

               
               607-867, gnl|Hg17|chr19 (812697-812957)
               

               
               607-867, gnl|Mm7|chr10 (79672006-79672266)

Expressed library(ies): 32 entry(ies)

More info

Expressed library(ies): 32 entry(ies)

Help | Less info


               
               cly (4.34311)
               

               
               nco (2.42601)
               

               
               cag (2.11672)
               

               
               nje (1.82512)
               

               
               col (1.75507)
               

               
               lnt (1.56539)
               

               
               duo (1.20961)
               

               
               nlu (0.766724)
               

               
               jej (0.692452)
               

               
               med (0.58126)
               

               
               jca (0.569801)
               

               
               ill (0.526778)
               

               
               csp (0.483559)
               

               
               cbl (0.45919)
               

               
               cst (0.420109)
               

               
               cov (0.396458)
               

               
               fcc (0.39557)
               

               
               eje (0.395335)
               

               
               cli (0.305623)
               

               
               cga (0.279096)
               

               
               hlv (0.278513)
               

               
               nmm (0.265604)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               nep (0.183925)
               

               
               gul (0.177588)
               

               
               cje (0.165235)
               

               
               spl (0.143184)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)

Expressed library(ies): 32 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cly (4.34311)
               

               
               nco (2.42601)
               

               
               cag (2.11672)
               

               
               nje (1.82512)
               

               
               col (1.75507)
               

               
               lnt (1.56539)
               

               
               duo (1.20961)
               

               
               nlu (0.766724)
               

               
               jej (0.692452)
               

               
               med (0.58126)
               

               
               jca (0.569801)
               

               
               ill (0.526778)
               

               
               csp (0.483559)
               

               
               cbl (0.45919)
               

               
               cst (0.420109)
               

               
               cov (0.396458)
               

               
               fcc (0.39557)
               

               
               eje (0.395335)
               

               
               cli (0.305623)
               

               
               cga (0.279096)
               

               
               hlv (0.278513)
               

               
               nmm (0.265604)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               nep (0.183925)
               

               
               gul (0.177588)
               

               
               cje (0.165235)
               

               
               spl (0.143184)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)

	95-252, gnl\|bosTau2\|chr7 (29287326-29287175)
	95-252, gnl\|Hg17\|chr19 (810547-810687)

	308-464, gnl\|bosTau2\|chr7 (29286369-29286213)
	308-464, gnl\|Hg17\|chr19 (811618-811774)
	308-464, gnl\|Mm7\|chr10 (79671473-79671629)

	607-867, gnl\|bosTau2\|chr7 (29285894-29285634)
	607-867, gnl\|Hg17\|chr19 (812697-812957)
	607-867, gnl\|Mm7\|chr10 (79672006-79672266)

	cly (4.34311)
	nco (2.42601)
	cag (2.11672)
	nje (1.82512)
	col (1.75507)
	lnt (1.56539)
	duo (1.20961)
	nlu (0.766724)
	jej (0.692452)
	med (0.58126)
	jca (0.569801)
	ill (0.526778)
	csp (0.483559)
	cbl (0.45919)
	cst (0.420109)
	cov (0.396458)
	fcc (0.39557)
	eje (0.395335)
	cli (0.305623)
	cga (0.279096)
	hlv (0.278513)
	nmm (0.265604)
	mas (0.210305)
	hea (0.204499)
	nep (0.183925)
	gul (0.177588)
	cje (0.165235)
	spl (0.143184)
	bla (0.124347)
	eru (0.120048)
	pgl (0.118483)
	cty (0.10408)