Non-Coding RNA Search

Ss1.1-LyN1-MLN01D030098.5

Sequence:


               
               ATTCTGCAGTATAAAGGGAGCGGGGAAGGCGGGAGACAGCGCAGTTTGAATCGCGGTGCG
ACGGAGGAGTAGGCGGCGGGATCTCGCTTGGTGACTGACTAGTCCTTTCTCTGCCTTGCT
TGTTTGAGCTTCAGCAGAATTCGAAATGGCTGGCGGTAAGGCTGGGAAGGACTCCGGAAA
GGCCAAGACAAAGGCGGTTTCCCGCTCGCAGAGAGCCGGTTTGCAGTTTCCGGTGGGCCG
TATTCATCGACACCTGAAATCTAGGACGACCAGCCATGGACGTGTGGGCGCGACTGCCGC
TGTGTACAGCGCAGCCATCCTGGAGTACCTCACCGCAGAGGTACTTGAATTGGCAGGAAA
TGCATCAAAAGACTTGAAGGTAAAGCGTATTACTCCTCGTCACTTGCAACTTGCTATTCG
TGGAGATGAAGAATTGGATTCTCTCATCAAGGCTACAATCGCTGGTGGTGGTGTCATTCC
ACACATCCACAAATCTCTCATTGGGAAGAAAGGACAACAGAAGACTGTCTAAAGGATGCC
TGGATTCCTTATTATCTCAGGACTCTAAATACTCTAACAGCTGTCCAGTGTTGGTGATTC
CAGTGGACTGTATCTCTGTGAAAAACACAATTTTGCCTTTTTGTAATTCTATTTGAGCAA
GTTGGAAGTTTAATTAGCTTTCCAACCAACCAAATTTCTGCATTCGAGTCTTAACCATAT
TTAAGTGTTACTGTGGCTTCAAAGAAGCTATTGATTCTGAAGTAGTGGGTTTTGATTGAG
TTGACTGTTTTTAAAAAACTGTTTGGATTTTAATTGTGATGCAGAAGTTATAGTAACAAA
CATTTGGTTTTGTACAGACATTATTTCCACTTCGGTGGATAAGCTCAATAAAGGTCATAT
CCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTCTGCAGTATAAAGGGAGCGGGGAAGGCGGGAGACAGCGCAGTTTGAATCGCGGTGCG
ACGGAGGAGTAGGCGGCGGGATCTCGCTTGGTGACTGACTAGTCCTTTCTCTGCCTTGCT
TGTTTGAGCTTCAGCAGAATTCGAAATGGCTGGCGGTAAGGCTGGGAAGGACTCCGGAAA
GGCCAAGACAAAGGCGGTTTCCCGCTCGCAGAGAGCCGGTTTGCAGTTTCCGGTGGGCCG
TATTCATCGACACCTGAAATCTAGGACGACCAGCCATGGACGTGTGGGCGCGACTGCCGC
TGTGTACAGCGCAGCCATCCTGGAGTACCTCACCGCAGAGGTACTTGAATTGGCAGGAAA
TGCATCAAAAGACTTGAAGGTAAAGCGTATTACTCCTCGTCACTTGCAACTTGCTATTCG
TGGAGATGAAGAATTGGATTCTCTCATCAAGGCTACAATCGCTGGTGGTGGTGTCATTCC
ACACATCCACAAATCTCTCATTGGGAAGAAAGGACAACAGAAGACTGTCTAAAGGATGCC
TGGATTCCTTATTATCTCAGGACTCTAAATACTCTAACAGCTGTCCAGTGTTGGTGATTC
CAGTGGACTGTATCTCTGTGAAAAACACAATTTTGCCTTTTTGTAATTCTATTTGAGCAA
GTTGGAAGTTTAATTAGCTTTCCAACCAACCAAATTTCTGCATTCGAGTCTTAACCATAT
TTAAGTGTTACTGTGGCTTCAAAGAAGCTATTGATTCTGAAGTAGTGGGTTTTGATTGAG
TTGACTGTTTTTAAAAAACTGTTTGGATTTTAATTGTGATGCAGAAGTTATAGTAACAAA
CATTTGGTTTTGTACAGACATTATTTCCACTTCGGTGGATAAGCTCAATAAAGGTCATAT
CCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q68FD2_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q68FD2_MOUSE

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               160-399, - strand, RNAz p=0.94085

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               160-399, - strand, RNAz p=0.94085

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               41-867, gnl|bosTau2|chr17 (36004405-36005220)
               


               
               228-744, gnl|bosTau2|chr15 (52179141-52179640)
               

               
               228-744, gnl|Hg17|chr4 (101227719-101226597)
               

               
               228-744, gnl|Mm7|chr12 (81617023-81616506)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               41-867, gnl|bosTau2|chr17 (36004405-36005220)
               


               
               228-744, gnl|bosTau2|chr15 (52179141-52179640)
               

               
               228-744, gnl|Hg17|chr4 (101227719-101226597)
               

               
               228-744, gnl|Mm7|chr12 (81617023-81616506)

Expressed library(ies): 56 entry(ies)

More info

Expressed library(ies): 56 entry(ies)

Help | Less info


               
               fty (2.28592)
               

               
               thg (2.15545)
               

               
               spl (2.14777)
               

               
               cje (1.32188)
               

               
               elu (1.15607)
               

               
               rec (1.03842)
               

               
               nbm (0.893921)
               

               
               ill (0.877963)
               

               
               med (0.813764)
               

               
               mcp (0.682594)
               

               
               tes (0.623441)
               

               
               pty (0.570858)
               

               
               fce (0.543183)
               

               
               duo (0.518403)
               

               
               ova (0.516529)
               

               
               pro (0.512033)
               

               
               eje (0.494169)
               

               
               mgp (0.461361)
               

               
               nca (0.410621)
               

               
               che (0.408942)
               

               
               nmm (0.398406)
               

               
               nep (0.36785)
               

               
               eep (0.367692)
               

               
               ebs (0.354904)
               

               
               fbs (0.350693)
               

               
               nje (0.33184)
               

               
               nco (0.323468)
               

               
               eli (0.303628)
               

               
               cag (0.302389)
               

               
               lun (0.300978)
               

               
               ski (0.29347)
               

               
               cte (0.29274)
               

               
               liv (0.292569)
               

               
               hyp (0.285673)
               

               
               sug (0.254582)
               

               
               cly (0.241284)
               

               
               ecc (0.23007)
               

               
               jca (0.22792)
               

               
               nms (0.213858)
               

               
               jej (0.197844)
               

               
               col (0.195008)
               

               
               ldo (0.194005)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               cli (0.152812)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)

Expressed library(ies): 56 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (2.28592)
               

               
               thg (2.15545)
               

               
               spl (2.14777)
               

               
               cje (1.32188)
               

               
               elu (1.15607)
               

               
               rec (1.03842)
               

               
               nbm (0.893921)
               

               
               ill (0.877963)
               

               
               med (0.813764)
               

               
               mcp (0.682594)
               

               
               tes (0.623441)
               

               
               pty (0.570858)
               

               
               fce (0.543183)
               

               
               duo (0.518403)
               

               
               ova (0.516529)
               

               
               pro (0.512033)
               

               
               eje (0.494169)
               

               
               mgp (0.461361)
               

               
               nca (0.410621)
               

               
               che (0.408942)
               

               
               nmm (0.398406)
               

               
               nep (0.36785)
               

               
               eep (0.367692)
               

               
               ebs (0.354904)
               

               
               fbs (0.350693)
               

               
               nje (0.33184)
               

               
               nco (0.323468)
               

               
               eli (0.303628)
               

               
               cag (0.302389)
               

               
               lun (0.300978)
               

               
               ski (0.29347)
               

               
               cte (0.29274)
               

               
               liv (0.292569)
               

               
               hyp (0.285673)
               

               
               sug (0.254582)
               

               
               cly (0.241284)
               

               
               ecc (0.23007)
               

               
               jca (0.22792)
               

               
               nms (0.213858)
               

               
               jej (0.197844)
               

               
               col (0.195008)
               

               
               ldo (0.194005)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               cli (0.152812)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)

	41-867, gnl\|bosTau2\|chr17 (36004405-36005220)

	228-744, gnl\|bosTau2\|chr15 (52179141-52179640)
	228-744, gnl\|Hg17\|chr4 (101227719-101226597)
	228-744, gnl\|Mm7\|chr12 (81617023-81616506)

	fty (2.28592)
	thg (2.15545)
	spl (2.14777)
	cje (1.32188)
	elu (1.15607)
	rec (1.03842)
	nbm (0.893921)
	ill (0.877963)
	med (0.813764)
	mcp (0.682594)
	tes (0.623441)
	pty (0.570858)
	fce (0.543183)
	duo (0.518403)
	ova (0.516529)
	pro (0.512033)
	eje (0.494169)
	mgp (0.461361)
	nca (0.410621)
	che (0.408942)
	nmm (0.398406)
	nep (0.36785)
	eep (0.367692)
	ebs (0.354904)
	fbs (0.350693)
	nje (0.33184)
	nco (0.323468)
	eli (0.303628)
	cag (0.302389)
	lun (0.300978)
	ski (0.29347)
	cte (0.29274)
	liv (0.292569)
	hyp (0.285673)
	sug (0.254582)
	cly (0.241284)
	ecc (0.23007)
	jca (0.22792)
	nms (0.213858)
	jej (0.197844)
	col (0.195008)
	ldo (0.194005)
	sin (0.174948)
	eye (0.170503)
	fco (0.157208)
	tbr (0.154178)
	cli (0.152812)
	lnt (0.142308)
	csk (0.140746)
	ute (0.132784)
	cov (0.132153)
	ese (0.126502)
	bla (0.124347)
	pgl (0.118483)
	cbl (0.114797)
	spc (0.113366)