Non-Coding RNA Search

Ss1.1-LyN1-MLN01D040010.5.5

Sequence:


               
               CTCTCTCCTCCCGTTGTCCAAGATGCCCAAGGGGAAGAAGGCCAAGGGCAAGAAGGTGGC
CCCGGCCCCTGCCGTCGTGAAGAAGCAGGAGGCCAAGAAGGTGGTAAACCCCCTGTTTGA
GAAAAGGCCGAAGAATTTTGGCATCGGACAGGACATCCAGCCCAAGAGGGACCTCACCCG
TTTTGTCAAATGGCCCCGCTACATCCGGCTGCAGCGGCAAAGGGCCATTCTCTATAAGCG
GCTGAAGGTGCCTCCCGCAATTAACCAGTTTACCCAGGCCTTGGACCGCCAAACAGCTAC
TCAGCTGCTTAAGCTGGCCCACAAGTACAGACCAGAGACAAAGCAAGAGAAGAAGCAGAG
GTTGCTGGCCCGAGCTGAGAAGAAGGCTGCAGGCAAAGGCGATGTCCCCACCAAGAGGCC
GCCTGTCCTTCGAGCAGGGGTGAATACTGTCACCACCTTGGTGGAGAACAAGAAGGCTCA
GCTGGTGGTGATCGCACACGACGTGGATCCCATTGAGCTGGTGGTCTTCCTGCCGGCCCT
GTGTCGGAAGATGGGGGTCCCCTACTGCATCATCAAGGGCAAGGCCAGGCTGGGGCGGCT
GGTCCACAGGAAGACCTGCACCACCGTGGCCTTCACGCAAGTCAACTCGGAAGACAAGGG
CGCTCTGGCTAAGCTGGTGGAAGCCATCCGGACCAATTACAACGACAGATACGACGAGAT
CCGGCGTCACTGGGGAGGCAACGTCCTGGGTCCCAAGTCGGTGGCTCGCATCGCCAAGCT
GGAGAAGGCGAAGGCCAAAGAGCTGGCCACCAAGCTGGGCTAAGTGTACACCGCGGAGGC
TTCTGTACATAAAAGTTATTAATAAAACTTTCAGCCAATTAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTCTCCTCCCGTTGTCCAAGATGCCCAAGGGGAAGAAGGCCAAGGGCAAGAAGGTGGC
CCCGGCCCCTGCCGTCGTGAAGAAGCAGGAGGCCAAGAAGGTGGTAAACCCCCTGTTTGA
GAAAAGGCCGAAGAATTTTGGCATCGGACAGGACATCCAGCCCAAGAGGGACCTCACCCG
TTTTGTCAAATGGCCCCGCTACATCCGGCTGCAGCGGCAAAGGGCCATTCTCTATAAGCG
GCTGAAGGTGCCTCCCGCAATTAACCAGTTTACCCAGGCCTTGGACCGCCAAACAGCTAC
TCAGCTGCTTAAGCTGGCCCACAAGTACAGACCAGAGACAAAGCAAGAGAAGAAGCAGAG
GTTGCTGGCCCGAGCTGAGAAGAAGGCTGCAGGCAAAGGCGATGTCCCCACCAAGAGGCC
GCCTGTCCTTCGAGCAGGGGTGAATACTGTCACCACCTTGGTGGAGAACAAGAAGGCTCA
GCTGGTGGTGATCGCACACGACGTGGATCCCATTGAGCTGGTGGTCTTCCTGCCGGCCCT
GTGTCGGAAGATGGGGGTCCCCTACTGCATCATCAAGGGCAAGGCCAGGCTGGGGCGGCT
GGTCCACAGGAAGACCTGCACCACCGTGGCCTTCACGCAAGTCAACTCGGAAGACAAGGG
CGCTCTGGCTAAGCTGGTGGAAGCCATCCGGACCAATTACAACGACAGATACGACGAGAT
CCGGCGTCACTGGGGAGGCAACGTCCTGGGTCCCAAGTCGGTGGCTCGCATCGCCAAGCT
GGAGAAGGCGAAGGCCAAAGAGCTGGCCACCAAGCTGGGCTAAGTGTACACCGCGGAGGC
TTCTGTACATAAAAGTTATTAATAAAACTTTCAGCCAATTAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5T8U4_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5T8U4_HUMAN

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               160-399, - strand, RNAz p=0.911492
               

               
               383-559, - strand, RNAz p=0.986107

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               160-399, - strand, RNAz p=0.911492
               

               
               383-559, - strand, RNAz p=0.986107

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               1-889, gnl|bosTau2|chr6 (31694071-31693183)
               

               
               1-889, gnl|Hg17|chr14 (69422632-69421738)
               

               
               1-889, gnl|Mm7|chrX (161628551-161629429)
               


               
               264-853, gnl|bosTau2|chr12 (39471484-39470922)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-889, gnl|bosTau2|chr6 (31694071-31693183)
               

               
               1-889, gnl|Hg17|chr14 (69422632-69421738)
               

               
               1-889, gnl|Mm7|chrX (161628551-161629429)
               


               
               264-853, gnl|bosTau2|chr12 (39471484-39470922)

Expressed library(ies): 63 entry(ies)

More info

Expressed library(ies): 63 entry(ies)

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               mcp (6.31399)
               

               
               eje (5.04052)
               

               
               eep (4.90256)
               

               
               ese (4.68058)
               

               
               fty (4.39599)
               

               
               med (4.30133)
               

               
               ece (4.12749)
               

               
               cly (4.10182)
               

               
               nca (3.96934)
               

               
               ill (3.86304)
               

               
               nmm (3.85126)
               

               
               eru (3.84154)
               

               
               fce (3.80228)
               

               
               nco (3.71988)
               

               
               nep (3.6785)
               

               
               lnt (3.55771)
               

               
               ebs (3.54904)
               

               
               nlu (3.45026)
               

               
               ecc (3.33602)
               

               
               csp (2.90135)
               

               
               pty (2.85429)
               

               
               jca (2.849)
               

               
               cov (2.77521)
               

               
               duo (2.76482)
               

               
               col (2.73011)
               

               
               nje (2.65472)
               

               
               fli (2.63745)
               

               
               ton (2.6325)
               

               
               cag (2.41911)
               

               
               elu (2.31214)
               

               
               nms (1.92472)
               

               
               mas (1.89274)
               

               
               jej (1.87951)
               

               
               eye (1.70503)
               

               
               nbm (1.68852)
               

               
               cga (1.67457)
               

               
               hlv (1.67108)
               

               
               fbs (1.57812)
               

               
               eli (1.21451)
               

               
               ute (1.19506)
               

               
               fhi (1.18704)
               

               
               hyp (1.14269)
               

               
               fcc (0.988924)
               

               
               amn (0.835422)
               

               
               cje (0.495704)
               

               
               clu (0.478583)
               

               
               cli (0.458435)
               

               
               che (0.408942)
               

               
               ssp (0.406559)
               

               
               pgl (0.35545)
               

               
               cut (0.339847)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               ldo (0.194005)
               

               
               sag (0.182715)
               

               
               ctl (0.153069)
               

               
               fat (0.147427)
               

               
               cst (0.140036)
               

               
               ste (0.135208)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)

Expressed library(ies): 63 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (6.31399)
               

               
               eje (5.04052)
               

               
               eep (4.90256)
               

               
               ese (4.68058)
               

               
               fty (4.39599)
               

               
               med (4.30133)
               

               
               ece (4.12749)
               

               
               cly (4.10182)
               

               
               nca (3.96934)
               

               
               ill (3.86304)
               

               
               nmm (3.85126)
               

               
               eru (3.84154)
               

               
               fce (3.80228)
               

               
               nco (3.71988)
               

               
               nep (3.6785)
               

               
               lnt (3.55771)
               

               
               ebs (3.54904)
               

               
               nlu (3.45026)
               

               
               ecc (3.33602)
               

               
               csp (2.90135)
               

               
               pty (2.85429)
               

               
               jca (2.849)
               

               
               cov (2.77521)
               

               
               duo (2.76482)
               

               
               col (2.73011)
               

               
               nje (2.65472)
               

               
               fli (2.63745)
               

               
               ton (2.6325)
               

               
               cag (2.41911)
               

               
               elu (2.31214)
               

               
               nms (1.92472)
               

               
               mas (1.89274)
               

               
               jej (1.87951)
               

               
               eye (1.70503)
               

               
               nbm (1.68852)
               

               
               cga (1.67457)
               

               
               hlv (1.67108)
               

               
               fbs (1.57812)
               

               
               eli (1.21451)
               

               
               ute (1.19506)
               

               
               fhi (1.18704)
               

               
               hyp (1.14269)
               

               
               fcc (0.988924)
               

               
               amn (0.835422)
               

               
               cje (0.495704)
               

               
               clu (0.478583)
               

               
               cli (0.458435)
               

               
               che (0.408942)
               

               
               ssp (0.406559)
               

               
               pgl (0.35545)
               

               
               cut (0.339847)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               ldo (0.194005)
               

               
               sag (0.182715)
               

               
               ctl (0.153069)
               

               
               fat (0.147427)
               

               
               cst (0.140036)
               

               
               ste (0.135208)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)

	160-399, - strand, RNAz p=0.911492
	383-559, - strand, RNAz p=0.986107

	1-889, gnl\|bosTau2\|chr6 (31694071-31693183)
	1-889, gnl\|Hg17\|chr14 (69422632-69421738)
	1-889, gnl\|Mm7\|chrX (161628551-161629429)

	264-853, gnl\|bosTau2\|chr12 (39471484-39470922)

	mcp (6.31399)
	eje (5.04052)
	eep (4.90256)
	ese (4.68058)
	fty (4.39599)
	med (4.30133)
	ece (4.12749)
	cly (4.10182)
	nca (3.96934)
	ill (3.86304)
	nmm (3.85126)
	eru (3.84154)
	fce (3.80228)
	nco (3.71988)
	nep (3.6785)
	lnt (3.55771)
	ebs (3.54904)
	nlu (3.45026)
	ecc (3.33602)
	csp (2.90135)
	pty (2.85429)
	jca (2.849)
	cov (2.77521)
	duo (2.76482)
	col (2.73011)
	nje (2.65472)
	fli (2.63745)
	ton (2.6325)
	cag (2.41911)
	elu (2.31214)
	nms (1.92472)
	mas (1.89274)
	jej (1.87951)
	eye (1.70503)
	nbm (1.68852)
	cga (1.67457)
	hlv (1.67108)
	fbs (1.57812)
	eli (1.21451)
	ute (1.19506)
	fhi (1.18704)
	hyp (1.14269)
	fcc (0.988924)
	amn (0.835422)
	cje (0.495704)
	clu (0.478583)
	cli (0.458435)
	che (0.408942)
	ssp (0.406559)
	pgl (0.35545)
	cut (0.339847)
	tes (0.207814)
	hea (0.204499)
	ldo (0.194005)
	sag (0.182715)
	ctl (0.153069)
	fat (0.147427)
	cst (0.140036)
	ste (0.135208)
	ova (0.129132)
	sug (0.127291)
	cbl (0.114797)
	cty (0.10408)