Ss1.1-LyN1-MLN01D040051.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGTGGGTCCCGGGGCCCCGCCCCTGCCCGGCCGGCAGCCGGCTGTTCCGACTCCAACCCG AGCCGACCCTAGAGGGTCCGGCTCCTGCGTGGGTCGGATCCCAGGTCATGGCGGTCTCTG GTCCTGCGCGCAGAGCTGGCGCCAGGCCCAGGTTAGATCTGCAATTTCTCCAGCGGTTCC TGCAGATACAGAAGGTTTTGTTTCCAGCTTGGTCCTCACAGAATGCTTTGATGTTCCTGA CCCTTGTGTGTGTGGCCCTACTGGAACAACTGGTGATCTACCGGGTTGGCCTGATCCCCA GTCAGTACTTTGGGGTCCTGGGAAGCAAAGACTTAAGTGGGTTTAAGACCCTGACATTCC TGGCTGTCACGCTTATCATCCTCAACTCCATGCTGAAGAGTTTCAACCAGTTCATCAGCA GCCTGCTGTACGTGAGCTGGAGGAAGGACCTCACCGAGCACCTTCACCACCTCTACTTCC GGGGCCGCGTGTACTACACCCTCAACGTGCTGCGGGATGACGTCGACAACCCGGACCAGC GCATCAGCCAGGACGTGGAACGGTTCTGCCGGCAGCTCAGCAGCATGGTCAGCAAGCTGA TCATCTCCCCCTTCACCCTCGTCTACTACACCTATCAGTGCTTCCAGAGCACCGGCTGGC TTGGGCCCGTGAGCATCTTCGGGTATTTCATCGTGGGAACCATGGTGAACAAAATGTTGA TGGGTCCCATCGTGGTGAAGCTGGTGCAGCAGGAGAAGCTGGAGGGGGATTTCAGGTTCA AGCACATGCAGATCCGGGTGAATGCTGAGCCTGCTGCTTTTTTCAGAGCTGGGCACGTGG AGCACGTGAGGACAGACCGCAGGCTGCAGAGACTCCTTCGGACGCAGAGGGAGCTGATGT CCAAGGAGCTGTGGCTGTACATCGGCGTCAACACGTTTGACTATCTGGGCAGCATCCTGA GTTACGTCGTGATCGCCATCCCCATCTTCAGCGGTGTCTATGGAGACCTGAGCCCCACGG AGCTCAGCACCCTGGTCAGCAAGAACGCCTTCGTATGCATGTACCTCATCAGCTGCTTCA CCCGGCTCATCGACCTGTCCACCCCGCTCTCGGATGTGGCCGGTTACACACACAGGATCG GAGAGCTTCGGGAGACCCTGCTGGACTTGGCCCTGAAGTCGCAGGAGGGGGAGATCCAGG ACGAGAGCACATGGGACTTGGCCAGGGCCCCGGGATGGCCAGCAGTAGAGCCAACAGGTA CAGCTTTTCTCCTCGAGCAGGTGTGCATCTCCGCCCCCTCCTCTAACAAACCCTTAATCA AGGATCTGAGCCTGAAGATCTGCGAGGGGCAGAGCCTGCTCATCACGGGCAACACAGGCA CTGGCAAGACCTCCTTGCTCCGGATTCTGGGAGGCCTCTGGGCGAGCCCACTCGGCTCAG TGCAGATGCTAACAGACTTTGGACCCCATGGGGTGCTATTCCTGCCACAAAAGCCATTCT TCACTGACGGGACCCTTCGGGAGCAGGTGATATACCCCTTGAAGGAGATCTACCCGGACT CAGGTTCTACTGATGACGAGAGGATCATGAGGTTCTTGGAGCTGGCAGGCCTGTCCAGCT TGGTGGCAAGGACAGAGGGTCTGGACCAGCAGGTCGATTGGAACTGGTATGATGTTCTGT CCCCAGGAGAGATGCAGAGGCTCTCCTTTGCCCGGCTCTTCTACCTGCAGCCCAAGTACG CAGTGCTTGATGAAGCCACCAGTGCCCTGACCGAGGAGGTGGAGAGCGAGCTCTACCGCA TTGGCCAGCAGCTGGGCATGACGTTCATCAGCGTAGGACATCGGCGCAGCCTTGAGAAGT TTCACACCTTGGTTCTGAAGCTCTGTGGAGAAGGCAGGTGGGAGCTGACCAGAATCAAAG TGGAATGAAGTCAAGTCTGGCCACTGGATGGGGAGCGGAGCTTGGGGAGGTCAAGTCCCC AGGAGCGACCCGGAGGGCTGATGGGGTGAGGAGCGAGCTCCGGTTTGCCTCAGGTCCTGT GTGGGGAGTGCTGGCAGCAGTGGGCTCAGCCAGCGCATGGCCCCTGTGGGCCACTTGGTC CTGCCAGGGTCCCCCCACCTCCGCCACTGCCTCAGCCATAGCTTCGGACACCTGAAGTGC TGATACTTACAAATCACCTCAGAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGTGGGTCCCGGGGCCCCGCCCCTGCCCGGCCGGCAGCCGGCTGTTCCGACTCCAACCCG AGCCGACCCTAGAGGGTCCGGCTCCTGCGTGGGTCGGATCCCAGGTCATGGCGGTCTCTG GTCCTGCGCGCAGAGCTGGCGCCAGGCCCAGGTTAGATCTGCAATTTCTCCAGCGGTTCC TGCAGATACAGAAGGTTTTGTTTCCAGCTTGGTCCTCACAGAATGCTTTGATGTTCCTGA CCCTTGTGTGTGTGGCCCTACTGGAACAACTGGTGATCTACCGGGTTGGCCTGATCCCCA GTCAGTACTTTGGGGTCCTGGGAAGCAAAGACTTAAGTGGGTTTAAGACCCTGACATTCC TGGCTGTCACGCTTATCATCCTCAACTCCATGCTGAAGAGTTTCAACCAGTTCATCAGCA GCCTGCTGTACGTGAGCTGGAGGAAGGACCTCACCGAGCACCTTCACCACCTCTACTTCC GGGGCCGCGTGTACTACACCCTCAACGTGCTGCGGGATGACGTCGACAACCCGGACCAGC GCATCAGCCAGGACGTGGAACGGTTCTGCCGGCAGCTCAGCAGCATGGTCAGCAAGCTGA TCATCTCCCCCTTCACCCTCGTCTACTACACCTATCAGTGCTTCCAGAGCACCGGCTGGC TTGGGCCCGTGAGCATCTTCGGGTATTTCATCGTGGGAACCATGGTGAACAAAATGTTGA TGGGTCCCATCGTGGTGAAGCTGGTGCAGCAGGAGAAGCTGGAGGGGGATTTCAGGTTCA AGCACATGCAGATCCGGGTGAATGCTGAGCCTGCTGCTTTTTTCAGAGCTGGGCACGTGG AGCACGTGAGGACAGACCGCAGGCTGCAGAGACTCCTTCGGACGCAGAGGGAGCTGATGT CCAAGGAGCTGTGGCTGTACATCGGCGTCAACACGTTTGACTATCTGGGCAGCATCCTGA GTTACGTCGTGATCGCCATCCCCATCTTCAGCGGTGTCTATGGAGACCTGAGCCCCACGG AGCTCAGCACCCTGGTCAGCAAGAACGCCTTCGTATGCATGTACCTCATCAGCTGCTTCA CCCGGCTCATCGACCTGTCCACCCCGCTCTCGGATGTGGCCGGTTACACACACAGGATCG GAGAGCTTCGGGAGACCCTGCTGGACTTGGCCCTGAAGTCGCAGGAGGGGGAGATCCAGG ACGAGAGCACATGGGACTTGGCCAGGGCCCCGGGATGGCCAGCAGTAGAGCCAACAGGTA CAGCTTTTCTCCTCGAGCAGGTGTGCATCTCCGCCCCCTCCTCTAACAAACCCTTAATCA AGGATCTGAGCCTGAAGATCTGCGAGGGGCAGAGCCTGCTCATCACGGGCAACACAGGCA CTGGCAAGACCTCCTTGCTCCGGATTCTGGGAGGCCTCTGGGCGAGCCCACTCGGCTCAG TGCAGATGCTAACAGACTTTGGACCCCATGGGGTGCTATTCCTGCCACAAAAGCCATTCT TCACTGACGGGACCCTTCGGGAGCAGGTGATATACCCCTTGAAGGAGATCTACCCGGACT CAGGTTCTACTGATGACGAGAGGATCATGAGGTTCTTGGAGCTGGCAGGCCTGTCCAGCT TGGTGGCAAGGACAGAGGGTCTGGACCAGCAGGTCGATTGGAACTGGTATGATGTTCTGT CCCCAGGAGAGATGCAGAGGCTCTCCTTTGCCCGGCTCTTCTACCTGCAGCCCAAGTACG CAGTGCTTGATGAAGCCACCAGTGCCCTGACCGAGGAGGTGGAGAGCGAGCTCTACCGCA TTGGCCAGCAGCTGGGCATGACGTTCATCAGCGTAGGACATCGGCGCAGCCTTGAGAAGT TTCACACCTTGGTTCTGAAGCTCTGTGGAGAAGGCAGGTGGGAGCTGACCAGAATCAAAG TGGAATGAAGTCAAGTCTGGCCACTGGATGGGGAGCGGAGCTTGGGGAGGTCAAGTCCCC AGGAGCGACCCGGAGGGCTGATGGGGTGAGGAGCGAGCTCCGGTTTGCCTCAGGTCCTGT GTGGGGAGTGCTGGCAGCAGTGGGCTCAGCCAGCGCATGGCCCCTGTGGGCCACTTGGTC CTGCCAGGGTCCCCCCACCTCCGCCACTGCCTCAGCCATAGCTTCGGACACCTGAAGTGC TGATACTTACAAATCACCTCAGAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 648-767, + strand, RNAz p=0.71966 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 648-767, + strand, RNAz p=0.71966 |
| Aligned organism(s): 62 entry(ies) | More info |
| Aligned organism(s): 62 entry(ies) | Help | Less info |
| 143-264, gnl|bosTau2|chr10 (60880742-60880621) | |
| 143-264, gnl|Hg17|chr14 (73836727-73836410) | |
| 143-264, gnl|Mm7|chr12 (82615415-82615294) | |
| 372-533, gnl|bosTau2|chr10 (60879137-60878976) | |
| 372-533, gnl|canFam2|chr8 (50536759-50536914) | |
| 372-533, gnl|danRer3|chr24 (30224766-30224913) | |
| 372-533, gnl|dasNov1|scaffold_43154 (7753-7908) | |
| 372-533, gnl|echTel1|scaffold_263201 (809-652) | |
| 372-533, gnl|fr1|chrUn (142113201-142113052) | |
| 372-533, gnl|galGal2|chr5 (34731167-34731322) | |
| 372-533, gnl|hg17|chr14 (73834376-73834531) | |
| 372-533, gnl|Hg17|chr14 (73834546-73834385) | |
| 372-533, gnl|loxAfr1|scaffold_56115 (4584-4741) | |
| 372-533, gnl|mm7|chr12 (82613863-82614018) | |
| 372-533, gnl|Mm7|chr12 (82614032-82613872) | |
| 372-533, gnl|monDom2|scaffold_8 (60457194-60457039) | |
| 372-533, gnl|oryCun1|scaffold_213254 (15677-15828) | |
| 372-533, gnl|panTro1|chr15 (73869042-73869197) | |
| 372-533, gnl|rheMac2|chr7 (137405141-137405296) | |
| 372-533, gnl|rn3|chr6 (108681794-108681949) | |
| 372-533, gnl|tetNig1|chr14 (5229690-5229541) | |
| 648-777, gnl|bosTau2|chr10 (60876948-60876819) | |
| 648-777, gnl|canFam2|chr8 (50534619-50534752) | |
| 648-777, gnl|danRer3|chr24 (30220763-30220896) | |
| 648-777, gnl|dasNov1|scaffold_43154 (5950-6083) | |
| 648-777, gnl|echTel1|scaffold_263201 (2493-2360) | |
| 648-777, gnl|fr1|chrUn (142113599-142113466) | |
| 648-777, gnl|galGal2|chr5 (34727521-34727654) | |
| 648-777, gnl|hg17|chr14 (73832309-73832442) | |
| 648-777, gnl|Hg17|chr14 (73832437-73832308) | |
| 648-777, gnl|loxAfr1|scaffold_56115 (2481-2614) | |
| 648-777, gnl|mm7|chr12 (82612292-82612425) | |
| 648-777, gnl|Mm7|chr12 (82612420-82612291) | |
| 648-777, gnl|monDom2|scaffold_8 (60459467-60459334) | |
| 648-777, gnl|oryCun1|scaffold_213254 (14051-14184) | |
| 648-777, gnl|panTro1|chr15 (73866956-73867089) | |
| 648-777, gnl|rheMac2|chr7 (137403124-137403257) | |
| 648-777, gnl|rn3|chr6 (108680021-108680154) | |
| 648-777, gnl|tetNig1|chr14 (5230091-5229958) | |
| 922-1043, gnl|bosTau2|chr10 (60873567-60873446) | |
| 922-1043, gnl|canFam2|chr8 (50532074-50532206) | |
| 922-1043, gnl|danRer3|chr24 (30218003-30218135) | |
| 922-1043, gnl|dasNov1|scaffold_43154 (3164-3296) | |
| 922-1043, gnl|echTel1|scaffold_263201 (5464-5332) | |
| 922-1043, gnl|fr1|chrUn (142114370-142114238) | |
| 922-1043, gnl|galGal2|chr5 (34723667-34723799) | |
| 922-1043, gnl|hg17|chr14 (73829197-73829329) | |
| 922-1043, gnl|Hg17|chr14 (73829325-73829204) | |
| 922-1043, gnl|mm7|chr12 (82608936-82609068) | |
| 922-1043, gnl|Mm7|chr12 (82609064-82608943) | |
| 922-1043, gnl|monDom2|scaffold_8 (60464718-60464586) | |
| 922-1043, gnl|oryCun1|scaffold_213254 (10407-10539) | |
| 922-1043, gnl|panTro1|chr15 (73863840-73863972) | |
| 922-1043, gnl|rheMac2|chr7 (137400011-137400143) | |
| 922-1043, gnl|rn3|chr6 (108676381-108676516) | |
| 922-1043, gnl|tetNig1|chr14 (5230819-5230687) | |
| 1222-1431, gnl|bosTau2|chr10 (60871136-60870927) | |
| 1222-1431, gnl|Hg17|chr14 (73826958-73826750) | |
| 1222-1431, gnl|Mm7|chr12 (82606280-82606071) | |
| 1858-2183, gnl|bosTau2|chr10 (60867542-60867231) | |
| 1858-2183, gnl|Hg17|chr14 (73822987-73822636) | |
| 1858-2183, gnl|Mm7|chr12 (82603129-82602854) |
| Aligned organism(s): 62 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 143-264, gnl|bosTau2|chr10 (60880742-60880621) | |
| 143-264, gnl|Hg17|chr14 (73836727-73836410) | |
| 143-264, gnl|Mm7|chr12 (82615415-82615294) | |
| 372-533, gnl|bosTau2|chr10 (60879137-60878976) | |
| 372-533, gnl|canFam2|chr8 (50536759-50536914) | |
| 372-533, gnl|danRer3|chr24 (30224766-30224913) | |
| 372-533, gnl|dasNov1|scaffold_43154 (7753-7908) | |
| 372-533, gnl|echTel1|scaffold_263201 (809-652) | |
| 372-533, gnl|fr1|chrUn (142113201-142113052) | |
| 372-533, gnl|galGal2|chr5 (34731167-34731322) | |
| 372-533, gnl|hg17|chr14 (73834376-73834531) | |
| 372-533, gnl|Hg17|chr14 (73834546-73834385) | |
| 372-533, gnl|loxAfr1|scaffold_56115 (4584-4741) | |
| 372-533, gnl|mm7|chr12 (82613863-82614018) | |
| 372-533, gnl|Mm7|chr12 (82614032-82613872) | |
| 372-533, gnl|monDom2|scaffold_8 (60457194-60457039) | |
| 372-533, gnl|oryCun1|scaffold_213254 (15677-15828) | |
| 372-533, gnl|panTro1|chr15 (73869042-73869197) | |
| 372-533, gnl|rheMac2|chr7 (137405141-137405296) | |
| 372-533, gnl|rn3|chr6 (108681794-108681949) | |
| 372-533, gnl|tetNig1|chr14 (5229690-5229541) | |
| 648-777, gnl|bosTau2|chr10 (60876948-60876819) | |
| 648-777, gnl|canFam2|chr8 (50534619-50534752) | |
| 648-777, gnl|danRer3|chr24 (30220763-30220896) | |
| 648-777, gnl|dasNov1|scaffold_43154 (5950-6083) | |
| 648-777, gnl|echTel1|scaffold_263201 (2493-2360) | |
| 648-777, gnl|fr1|chrUn (142113599-142113466) | |
| 648-777, gnl|galGal2|chr5 (34727521-34727654) | |
| 648-777, gnl|hg17|chr14 (73832309-73832442) | |
| 648-777, gnl|Hg17|chr14 (73832437-73832308) | |
| 648-777, gnl|loxAfr1|scaffold_56115 (2481-2614) | |
| 648-777, gnl|mm7|chr12 (82612292-82612425) | |
| 648-777, gnl|Mm7|chr12 (82612420-82612291) | |
| 648-777, gnl|monDom2|scaffold_8 (60459467-60459334) | |
| 648-777, gnl|oryCun1|scaffold_213254 (14051-14184) | |
| 648-777, gnl|panTro1|chr15 (73866956-73867089) | |
| 648-777, gnl|rheMac2|chr7 (137403124-137403257) | |
| 648-777, gnl|rn3|chr6 (108680021-108680154) | |
| 648-777, gnl|tetNig1|chr14 (5230091-5229958) | |
| 922-1043, gnl|bosTau2|chr10 (60873567-60873446) | |
| 922-1043, gnl|canFam2|chr8 (50532074-50532206) | |
| 922-1043, gnl|danRer3|chr24 (30218003-30218135) | |
| 922-1043, gnl|dasNov1|scaffold_43154 (3164-3296) | |
| 922-1043, gnl|echTel1|scaffold_263201 (5464-5332) | |
| 922-1043, gnl|fr1|chrUn (142114370-142114238) | |
| 922-1043, gnl|galGal2|chr5 (34723667-34723799) | |
| 922-1043, gnl|hg17|chr14 (73829197-73829329) | |
| 922-1043, gnl|Hg17|chr14 (73829325-73829204) | |
| 922-1043, gnl|mm7|chr12 (82608936-82609068) | |
| 922-1043, gnl|Mm7|chr12 (82609064-82608943) | |
| 922-1043, gnl|monDom2|scaffold_8 (60464718-60464586) | |
| 922-1043, gnl|oryCun1|scaffold_213254 (10407-10539) | |
| 922-1043, gnl|panTro1|chr15 (73863840-73863972) | |
| 922-1043, gnl|rheMac2|chr7 (137400011-137400143) | |
| 922-1043, gnl|rn3|chr6 (108676381-108676516) | |
| 922-1043, gnl|tetNig1|chr14 (5230819-5230687) | |
| 1222-1431, gnl|bosTau2|chr10 (60871136-60870927) | |
| 1222-1431, gnl|Hg17|chr14 (73826958-73826750) | |
| 1222-1431, gnl|Mm7|chr12 (82606280-82606071) | |
| 1858-2183, gnl|bosTau2|chr10 (60867542-60867231) | |
| 1858-2183, gnl|Hg17|chr14 (73822987-73822636) | |
| 1858-2183, gnl|Mm7|chr12 (82603129-82602854) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| fce (0.271592) | |
| ece (0.229305) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| cki (0.165235) | |
| csp (0.161186) | |
| med (0.116252) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fce (0.271592) | |
| ece (0.229305) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| cki (0.165235) | |
| csp (0.161186) | |
| med (0.116252) |