Non-Coding RNA Search

Ss1.1-LyN1-MLN01D040090.5

Sequence:


               
               GGATGGGCTGCTCCTCCCAGGGTTCAAAGGCTGCTGGGTCTCCTCAGGGTCTCACCTCTC
CCAGGCCAAGCTCAAGGCAGCAGCCCATTGTGAGGAGCTCCAGGCTTGTGAGGGAGAACT
TTAAGCTTGTTTGCTTATAGGGACATGGTGTGGGCACTGGATGCAAGTGTCCAGATTCTG
CTAATGAGAATTTTGTCTTATCAGTACTGGGGTCCATCAGTCTGTCCATTTGTCCATCTG
TCAGCCCCTGTCTCTTGGGATCTTTCCCTGGGGGTATAGCCTTGTTCATTAGTAAATATT
GATTTCCTTCACACTTCCCCTCAGCAAGATATTCTCATTACCATTTCTGAGGTGAGCTTT
TGCCCCTGTGCCCTTCCTCAGCAGGTGCTACCTTTTTATAAAAAACTGGTAGCAGAATGA
ATTGGAGGAGGTATTTCCCTGCTGGCCCAGTACCCTCTCTGTGAGCATTGAGTGTGGTCC
CCTCAGCACTCAACAGTGACAGTGGCACAGTGAAGGCCCAAGGGGTGACCCCTTCCTTTC
CCACGGTTTTAGTAATTTTTGCTGCCAGCCCTGAATGGCACAGAGGCTTGCTACCTCTAA
AACATGCGGTCAGGAGGTGGCACTGCTTGCACTTAGCCATTGCCAAGGTTAGTGCCCTAA
CCTCCAAGCCTAGGGCCACTGTCATTGTCACTTGTGGCATGTCCCTATTTGGGCATTAGA
GGTAAGCCTGCCAGCCTGTGTCTGTAAGAAGCTTTGGTAAGTAATGGACTAATTTCATGG
TCCATAGATATGCAGCCTCACTCATCTTAAATGGGCTCCTAGATGGGATCCCATCTCTCT
CGGCCTTCTGATTCTGGTGCCATTGGTGGGCAGGTTCCCATTTCTTGGGGCTAGGAGGGG
GCAGCTTGCCTGTTTCTGATTAGTAATGACCGTCTTTTCTCTTGTACTATTTTGTGGCTT
CAGCCATAGGGGCAGTAGCTCTTCATTAGTGTGGATAGTCATTTCTTGGCAGGGCAGAGG
CCAAGACAAAGGTTTGGGGGCCAGCTGGGACCCCCTTGTTGGAACCTCTCCAGCCTGGGG
ATGTGCTGTACCTCCTGAGTTCCTATATTTTGGGAGCAGATGCTGCCCCCATTCTGCTCT
TCATCACGAGAGGCTGTACCCACTTATAGTCAGCGTTTTCCTGGCATTGAGAAGAGCAGG
GCTGGGATCTGCTGCTTCTCCCGCAGGGCAGGGTCCCTCCTTCTTTCAGCACTTTTAAAC
ACTTGGGAGACCCAGCCTTGTTATCTGTTGAGTGGTGGGCATGCGCATCTGCACATGCTG
TTTGCCACTATTTTGCCCTGCTCCATGCCAGAGAGCCCTGTCCCTGCCAGGCCCTGTTTC
CCCAGCCCCAACTTGGGACCAAAGTGCAAGACGGGATCACTGGTTGGGGCGCTCAAGCGA
CCCCTCTGTGTAGTGCTTCCCTGGGCCAAGTCGACACCAGCCCCCTAGCGGGGTGGGATG
GGCGGTGCTTAAAAGAAAGGGGACCAGTGTAGCAACATGCTGGGGACCCCACCCCTCTCA
TGTCCGGTCCTGTGCAGTGGGCGTGGGGTTTCTCCTAAGGGGCCAAAGGCCTGAGCTAGT
TATGTAGCTGCTGCTCACTTGCTCACGGCTGGCCATGTGCACACTCCTAGATGCAGAATG
CTTTGAACTTTAGAGCTGTTCAATTTGGTCTTTGTGCAGATTTAATGTTTTAGTGGAAAA
AATTTGGGAGAATCCTGGGAAGGTCCTGGTTCCTTTGCTTCTCCGGGAACTGTAAGGCCT
GGCCTCGAGGACCACTCTCTGCTCCACTTTGCTGGAAGCTGCCTAAGCCTGTCCACGCTG
CCCGAGCCCTGCACCCGGATACTACACTTGGCTCCGGCCGTGTCCGGGCGCGGTTGCTTT
TTCTTGGGACCTTGAGCGCGGGAGAGGGGGTGCTCGAGCCTTGGGCCGAACCTGCCCCTT
TCCGTACACCTAGCGCTGCCCGCCCCGCTTGTGTCTGAGGTCGTGTATGTCAAAATAAAG
CCGCTAGAAACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGATGGGCTGCTCCTCCCAGGGTTCAAAGGCTGCTGGGTCTCCTCAGGGTCTCACCTCTC
CCAGGCCAAGCTCAAGGCAGCAGCCCATTGTGAGGAGCTCCAGGCTTGTGAGGGAGAACT
TTAAGCTTGTTTGCTTATAGGGACATGGTGTGGGCACTGGATGCAAGTGTCCAGATTCTG
CTAATGAGAATTTTGTCTTATCAGTACTGGGGTCCATCAGTCTGTCCATTTGTCCATCTG
TCAGCCCCTGTCTCTTGGGATCTTTCCCTGGGGGTATAGCCTTGTTCATTAGTAAATATT
GATTTCCTTCACACTTCCCCTCAGCAAGATATTCTCATTACCATTTCTGAGGTGAGCTTT
TGCCCCTGTGCCCTTCCTCAGCAGGTGCTACCTTTTTATAAAAAACTGGTAGCAGAATGA
ATTGGAGGAGGTATTTCCCTGCTGGCCCAGTACCCTCTCTGTGAGCATTGAGTGTGGTCC
CCTCAGCACTCAACAGTGACAGTGGCACAGTGAAGGCCCAAGGGGTGACCCCTTCCTTTC
CCACGGTTTTAGTAATTTTTGCTGCCAGCCCTGAATGGCACAGAGGCTTGCTACCTCTAA
AACATGCGGTCAGGAGGTGGCACTGCTTGCACTTAGCCATTGCCAAGGTTAGTGCCCTAA
CCTCCAAGCCTAGGGCCACTGTCATTGTCACTTGTGGCATGTCCCTATTTGGGCATTAGA
GGTAAGCCTGCCAGCCTGTGTCTGTAAGAAGCTTTGGTAAGTAATGGACTAATTTCATGG
TCCATAGATATGCAGCCTCACTCATCTTAAATGGGCTCCTAGATGGGATCCCATCTCTCT
CGGCCTTCTGATTCTGGTGCCATTGGTGGGCAGGTTCCCATTTCTTGGGGCTAGGAGGGG
GCAGCTTGCCTGTTTCTGATTAGTAATGACCGTCTTTTCTCTTGTACTATTTTGTGGCTT
CAGCCATAGGGGCAGTAGCTCTTCATTAGTGTGGATAGTCATTTCTTGGCAGGGCAGAGG
CCAAGACAAAGGTTTGGGGGCCAGCTGGGACCCCCTTGTTGGAACCTCTCCAGCCTGGGG
ATGTGCTGTACCTCCTGAGTTCCTATATTTTGGGAGCAGATGCTGCCCCCATTCTGCTCT
TCATCACGAGAGGCTGTACCCACTTATAGTCAGCGTTTTCCTGGCATTGAGAAGAGCAGG
GCTGGGATCTGCTGCTTCTCCCGCAGGGCAGGGTCCCTCCTTCTTTCAGCACTTTTAAAC
ACTTGGGAGACCCAGCCTTGTTATCTGTTGAGTGGTGGGCATGCGCATCTGCACATGCTG
TTTGCCACTATTTTGCCCTGCTCCATGCCAGAGAGCCCTGTCCCTGCCAGGCCCTGTTTC
CCCAGCCCCAACTTGGGACCAAAGTGCAAGACGGGATCACTGGTTGGGGCGCTCAAGCGA
CCCCTCTGTGTAGTGCTTCCCTGGGCCAAGTCGACACCAGCCCCCTAGCGGGGTGGGATG
GGCGGTGCTTAAAAGAAAGGGGACCAGTGTAGCAACATGCTGGGGACCCCACCCCTCTCA
TGTCCGGTCCTGTGCAGTGGGCGTGGGGTTTCTCCTAAGGGGCCAAAGGCCTGAGCTAGT
TATGTAGCTGCTGCTCACTTGCTCACGGCTGGCCATGTGCACACTCCTAGATGCAGAATG
CTTTGAACTTTAGAGCTGTTCAATTTGGTCTTTGTGCAGATTTAATGTTTTAGTGGAAAA
AATTTGGGAGAATCCTGGGAAGGTCCTGGTTCCTTTGCTTCTCCGGGAACTGTAAGGCCT
GGCCTCGAGGACCACTCTCTGCTCCACTTTGCTGGAAGCTGCCTAAGCCTGTCCACGCTG
CCCGAGCCCTGCACCCGGATACTACACTTGGCTCCGGCCGTGTCCGGGCGCGGTTGCTTT
TTCTTGGGACCTTGAGCGCGGGAGAGGGGGTGCTCGAGCCTTGGGCCGAACCTGCCCCTT
TCCGTACACCTAGCGCTGCCCGCCCCGCTTGTGTCTGAGGTCGTGTATGTCAAAATAAAG
CCGCTAGAAACT

Predicted RNA structure(s): 4 entry(ies)

More info

Predicted RNA structure(s): 4 entry(ies)

Help | Less info


               
               79-192, - strand, RNAz p=0.947556
               

               
               433-550, - strand, RNAz p=0.718413
               

               
               1021-1138, - strand, RNAz p=0.907692
               

               
               1212-1331, + strand, RNAz p=0.838489

Predicted RNA structure(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               79-192, - strand, RNAz p=0.947556
               

               
               433-550, - strand, RNAz p=0.718413
               

               
               1021-1138, - strand, RNAz p=0.907692
               

               
               1212-1331, + strand, RNAz p=0.838489

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of NM_153273, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_153273, +

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-2052, gnl|bosTau2|chr22 (38098994-38096962)
               

               
               1-2052, gnl|Hg17|chr3 (49738700-49736733)
               

               
               1-2052, gnl|Mm7|chr9 (107778487-107780437)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-2052, gnl|bosTau2|chr22 (38098994-38096962)
               

               
               1-2052, gnl|Hg17|chr3 (49738700-49736733)
               

               
               1-2052, gnl|Mm7|chr9 (107778487-107780437)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

Help | Less info


               
               cov (0.264306)
               

               
               ebs (0.236602)
               

               
               tes (0.207814)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               eru (0.120048)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.264306)
               

               
               ebs (0.236602)
               

               
               tes (0.207814)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               eru (0.120048)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

	79-192, - strand, RNAz p=0.947556
	433-550, - strand, RNAz p=0.718413
	1021-1138, - strand, RNAz p=0.907692
	1212-1331, + strand, RNAz p=0.838489

	1-2052, gnl\|bosTau2\|chr22 (38098994-38096962)
	1-2052, gnl\|Hg17\|chr3 (49738700-49736733)
	1-2052, gnl\|Mm7\|chr9 (107778487-107780437)

	cov (0.264306)
	ebs (0.236602)
	tes (0.207814)
	fbs (0.175346)
	fhi (0.169578)
	nje (0.16592)
	hyp (0.142837)
	lnt (0.142308)
	pla (0.133672)
	eru (0.120048)
	jca (0.11396)
	jej (0.0989218)