Ss1.1-LyN1-MLN01D040092.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GACGGCGATGTGGCCCGGCGGCAGCTTGGCGCGGCGGGTCGGGTCGCTTCTCTGGCGCCG GGCCCTTTACCCTGGAGCCTGGCCTGCGGTTAGCGTGGGGCCCCGGTTTCAGCAGCTGGC GGTGGGACAGCTTCCGGCGAGACCAGCGCTCGGCCATGCCTGCTCGGCCCCTGGCCGCAA GCGTGGCCTGCACGGGGTGCCGGGCCTGGAGGAGCGAATCCAGGGGACAGCCGGCGAGGG GCGCCCGGAGTCAGGCCCTGCAGATCATACTGGTCCCAAGTTTGACATCGATATGCTGGT TTCACTTCTGAGGCAAGAAAATGCAAGAGACATTTGTGTGATCAAGGTTCCTCCAGAAAT GAAATATACTGATTACTTTGTGATCTGTAGCGGAACTTCCACTCGGCACTTACATGCCAT GGCCCACTACATTGTGAAAATGTACAAATACCTGAGACGTGAAAGCGAGCCTCATGTTAA GATTGAAGGGAAGGACACTGACAACTGGCTCTGTGTGGACTTTGGCAGCATGGTGATTCA TTTGATGCTTCCAGAAACCAGAGAAATCTATGAATTAGAGAAATTATGGACCCTACGTTC TTATGATGATCAGTTAGCTCAGATAGCACCTGAGACCTTACCTGAAGACTTCATTCTTGG AATAGAAGATGATGCTTCATCCCTGACTCCTGTGGAGTTCAAATGTGAATAAAATGGTAT GAACTGCTTTAGAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GACGGCGATGTGGCCCGGCGGCAGCTTGGCGCGGCGGGTCGGGTCGCTTCTCTGGCGCCG GGCCCTTTACCCTGGAGCCTGGCCTGCGGTTAGCGTGGGGCCCCGGTTTCAGCAGCTGGC GGTGGGACAGCTTCCGGCGAGACCAGCGCTCGGCCATGCCTGCTCGGCCCCTGGCCGCAA GCGTGGCCTGCACGGGGTGCCGGGCCTGGAGGAGCGAATCCAGGGGACAGCCGGCGAGGG GCGCCCGGAGTCAGGCCCTGCAGATCATACTGGTCCCAAGTTTGACATCGATATGCTGGT TTCACTTCTGAGGCAAGAAAATGCAAGAGACATTTGTGTGATCAAGGTTCCTCCAGAAAT GAAATATACTGATTACTTTGTGATCTGTAGCGGAACTTCCACTCGGCACTTACATGCCAT GGCCCACTACATTGTGAAAATGTACAAATACCTGAGACGTGAAAGCGAGCCTCATGTTAA GATTGAAGGGAAGGACACTGACAACTGGCTCTGTGTGGACTTTGGCAGCATGGTGATTCA TTTGATGCTTCCAGAAACCAGAGAAATCTATGAATTAGAGAAATTATGGACCCTACGTTC TTATGATGATCAGTTAGCTCAGATAGCACCTGAGACCTTACCTGAAGACTTCATTCTTGG AATAGAAGATGATGCTTCATCCCTGACTCCTGTGGAGTTCAAATGTGAATAAAATGGTAT GAACTGCTTTAGAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 261-442, gnl|bosTau2|chr4 (11914448-11914629) | |
| 261-442, gnl|Hg17|chr7 (23113695-23113876) | |
| 261-442, gnl|Mm7|chr6 (49035133-49035314) | |
| 524-716, gnl|bosTau2|chr4 (11931456-11931648) | |
| 524-716, gnl|canFam2|chr12 (12941372-12941576) | |
| 524-716, gnl|canFam2|chr14 (39926688-39926868) | |
| 524-716, gnl|danRer3|chrNA (22662478-22662643) | |
| 524-716, gnl|dasNov1|scaffold_10830 (49087-49287) | |
| 524-716, gnl|dasNov1|scaffold_10830 (49324-49151) | |
| 524-716, gnl|echTel1|scaffold_197884 (7042-6866) | |
| 524-716, gnl|echTel1|scaffold_321397 (46783-46582) | |
| 524-716, gnl|fr1|chrUn (65843604-65843748) | |
| 524-716, gnl|galGal2|chr2 (30343374-30343548) | |
| 524-716, gnl|hg17|chr12 (32736690-32736889) | |
| 524-716, gnl|hg17|chr7 (23122178-23122354) | |
| 524-716, gnl|Hg17|chr7 (23122214-23122413) | |
| 524-716, gnl|loxAfr1|scaffold_40545 (2017-1816) | |
| 524-716, gnl|loxAfr1|scaffold_40545 (1777-1952) | |
| 524-716, gnl|mm7|chr6 (49044756-49044556) | |
| 524-716, gnl|mm7|chr6 (49044519-49044692) | |
| 524-716, gnl|Mm7|chr6 (49044552-49044741) | |
| 524-716, gnl|monDom2|scaffold_57 (3955877-3955707) | |
| 524-716, gnl|oryCun1|scaffold_208335 (48848-48670) | |
| 524-716, gnl|oryCun1|scaffold_85602 (60-246) | |
| 524-716, gnl|panTro1|chr6 (24194133-24194309) | |
| 524-716, gnl|panTro1|chrUn_random (34318632-34318433) | |
| 524-716, gnl|rheMac2|chr11 (32787840-32788039) | |
| 524-716, gnl|rheMac2|chr3 (102919090-102918914) | |
| 524-716, gnl|rn3|chr4 (77487159-77486959) | |
| 524-716, gnl|rn3|chr4 (77486921-77487094) | |
| 524-716, gnl|tetNig1|chr8 (6696887-6696731) | |
| 524-716, gnl|xenTro1|scaffold_29 (82212-82391) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 261-442, gnl|bosTau2|chr4 (11914448-11914629) | |
| 261-442, gnl|Hg17|chr7 (23113695-23113876) | |
| 261-442, gnl|Mm7|chr6 (49035133-49035314) | |
| 524-716, gnl|bosTau2|chr4 (11931456-11931648) | |
| 524-716, gnl|canFam2|chr12 (12941372-12941576) | |
| 524-716, gnl|canFam2|chr14 (39926688-39926868) | |
| 524-716, gnl|danRer3|chrNA (22662478-22662643) | |
| 524-716, gnl|dasNov1|scaffold_10830 (49087-49287) | |
| 524-716, gnl|dasNov1|scaffold_10830 (49324-49151) | |
| 524-716, gnl|echTel1|scaffold_197884 (7042-6866) | |
| 524-716, gnl|echTel1|scaffold_321397 (46783-46582) | |
| 524-716, gnl|fr1|chrUn (65843604-65843748) | |
| 524-716, gnl|galGal2|chr2 (30343374-30343548) | |
| 524-716, gnl|hg17|chr12 (32736690-32736889) | |
| 524-716, gnl|hg17|chr7 (23122178-23122354) | |
| 524-716, gnl|Hg17|chr7 (23122214-23122413) | |
| 524-716, gnl|loxAfr1|scaffold_40545 (2017-1816) | |
| 524-716, gnl|loxAfr1|scaffold_40545 (1777-1952) | |
| 524-716, gnl|mm7|chr6 (49044756-49044556) | |
| 524-716, gnl|mm7|chr6 (49044519-49044692) | |
| 524-716, gnl|Mm7|chr6 (49044552-49044741) | |
| 524-716, gnl|monDom2|scaffold_57 (3955877-3955707) | |
| 524-716, gnl|oryCun1|scaffold_208335 (48848-48670) | |
| 524-716, gnl|oryCun1|scaffold_85602 (60-246) | |
| 524-716, gnl|panTro1|chr6 (24194133-24194309) | |
| 524-716, gnl|panTro1|chrUn_random (34318632-34318433) | |
| 524-716, gnl|rheMac2|chr11 (32787840-32788039) | |
| 524-716, gnl|rheMac2|chr3 (102919090-102918914) | |
| 524-716, gnl|rn3|chr4 (77487159-77486959) | |
| 524-716, gnl|rn3|chr4 (77486921-77487094) | |
| 524-716, gnl|tetNig1|chr8 (6696887-6696731) | |
| 524-716, gnl|xenTro1|scaffold_29 (82212-82391) |
| Expressed library(ies): 32 entry(ies) | More info |
| Expressed library(ies): 32 entry(ies) | Help | Less info |
| sme (0.610874) | |
| bfe (0.599431) | |
| ton (0.351) | |
| vin (0.332557) | |
| eli (0.303628) | |
| isp (0.300752) | |
| cte (0.29274) | |
| che (0.272628) | |
| ssp (0.271039) | |
| cov (0.264306) | |
| thg (0.253582) | |
| cbe (0.239234) | |
| hea (0.204499) | |
| aor (0.195274) | |
| col (0.195008) | |
| nep (0.183925) | |
| rec (0.17307) | |
| cut (0.169924) | |
| nje (0.16592) | |
| cki (0.165235) | |
| nco (0.161734) | |
| csp (0.161186) | |
| fat (0.147427) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| ste (0.135208) | |
| nmm (0.132802) | |
| ebs (0.118301) | |
| jca (0.11396) | |
| spc (0.113366) | |
| ldo (0.0970026) |
| Expressed library(ies): 32 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sme (0.610874) | |
| bfe (0.599431) | |
| ton (0.351) | |
| vin (0.332557) | |
| eli (0.303628) | |
| isp (0.300752) | |
| cte (0.29274) | |
| che (0.272628) | |
| ssp (0.271039) | |
| cov (0.264306) | |
| thg (0.253582) | |
| cbe (0.239234) | |
| hea (0.204499) | |
| aor (0.195274) | |
| col (0.195008) | |
| nep (0.183925) | |
| rec (0.17307) | |
| cut (0.169924) | |
| nje (0.16592) | |
| cki (0.165235) | |
| nco (0.161734) | |
| csp (0.161186) | |
| fat (0.147427) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| ste (0.135208) | |
| nmm (0.132802) | |
| ebs (0.118301) | |
| jca (0.11396) | |
| spc (0.113366) | |
| ldo (0.0970026) |