Non-Coding RNA Search

Ss1.1-LyN1-MLN01D050033.5.5

Sequence:


               
               TAAGAACTGGAAAAATCGTGCCAATCTCTTTGAGTTGCTGTAAGGACGATGTTCATTTGT
AAACTCACCGATAATCTTTTTTAAATAATAGACTTTTGCTTCCTACAGTTTTTTATACCC
GATTTTAAAAGTGCATTCCCAGAGCTGCTGGTCAGACTCCTTTATCGAAGAAAGCTGAAG
ATTTTTAAAAACCGTGAATGCTTGCTTCCTCTGTGCTGTTCATCTGATGTGGAAATGTTT
TCCCCTCTCATTTTCACGAGTAAAGAGACTTAAGTAGCGGGAAGGATTCTTTTGGGAGTG
TTGCTGTGTATGCGTAGACATGTCACCTGCCTGCAGACCAGGCAGAGGCTGGTCAGAGGC
TTTTGGAAACCCTGCTGTGTCATTACTGGGTCGAATCTTCTGTGATCCCAGTTAGTTGGT
TTTGCTTTTTGTCCTCACAGTTTCTTGGGAAATGGCTTGAAAGAATTGTTGGCCAGAAGT
GTTCAGAGCTCCTTTGTAGAGCAGATGGGCTGATGGCGGGTGGGGTTACTGAGGATCTGG
GGTTCGGGTGCCCATCCCCTGTGGCTAGCAGGGGCTCCCACACCCTGTTGTTTTATTTCC
AGTTGCTCAGAGGCACCTTGATGATGGATGATGAGCTCTGTGCAGTACTAATTCCCACCC
CCCATCCCCAAATTGTCACCTTCTGCCTTTTTAAGATTATGTGCTAATTTAATTTTGGCC
GAAAGTTTACTACCATTGGTGCTTCTGTTACCCTGCAAAGGGAATTCCAGAGCTGTGTGC
GTTTAAGCTGCCTAGAGCTTTTTCTCCCTTGACCGCCTTTCTAAAGAGCATCTCATTTTG
GTGTATGGTCATGTTCTATCCCTCTTGGAAATGAAAGAGGGTTTAAGCTAAAACTAAGAA
GAGTGTAGCCTTGGGACAAGACCCCACAGGTCCAGGGAACACGCTGGGCCCTCATTATTC
AAGGACAGTGCCCGATGCCCCCGGGCTCATGGCATTTTCTGCAGGGGATTTTTGTTAATT
TGCTAAATCCCCATGACCTTGTTTTTAACCATGTTTCCTGCCATTGAAGTGTATTTTTGA
AGCCTCAGACCTTCTAATCCAGTGCTGCATTCAAGGCAGTGATGCACGCTCCAATGTTAG
ACCTGCTTTGCAAGACCGGAGAGCTGTTTTCACAATGTTTTGAACCAACACTAGCCATTC
TAATACTCTTTCTCTTTCTCTTCTCTCCCTTCCTCAGTAAAACATTTGCAGAGGTGTCCA
TTTTGAATGGGGGAAAAACTATTTGGCTTTTTACCAAAGAGGTATTCTTTTTTTTGACAG
CAAAATTCTTTCAGCAAAAACTTAATTGGGGAACGATGGATTAAGAATGCATTTGTCAGG
GTTCCCTGGTAGCCTAGCAGTTAAGGATCCCATGTTGTCATTGCTGTGGTCCAGGTTTGA
TCCCTGGCCTGGGAACTTTTGCATGCCGTGGGTTCGACAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAGAATGCATTTGTCCAATCCACTTCTATAGGTGTTGAATCATATTTATGTGA
GTGAAATTTGGGGAGAATTAAGGAAATCCTTTGTGGTGAAGGATCCTGGGAAATTCTCAG
GTAAAAAAAGCTTGCAGCAGATGGGTAATATATGTCTTGAGAGCTATTTATAAGAAATTT
AAGGATTGTTTTGTTTTATTAAAGATTTAAATGTTTTTTACTTTGCAAAAAAAAAAAACT
ACAAAAGTTTTATAGTCACAACTTTGTTAATTTTTTAAAACTTTTTTGAAATAATTAGAT
GTAGCCAAATTACGTGGTTATGTTTTGCTATGTTAGAATTTAAAAACGTAATGTGTGTGG
TAAATCTACTGTTTGAAATTTATAATGGTCTCAGATAAGGTTGAATTTTTGATAACTTTT
AAAATAGTTACTTTTTTTCTTTCAGTCACAAAGGCAAATACGGATTTATATTTGTTCTTT
TTTTCTTGAATGCTAATTTTTCTACAAAGCGTCTGAAGTTGACCCGTCATTTCCTATGTA
GAAAACTTAAACTTGTTAACTCTGTACTTGAATAAAATTGAAAATGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAGAACTGGAAAAATCGTGCCAATCTCTTTGAGTTGCTGTAAGGACGATGTTCATTTGT
AAACTCACCGATAATCTTTTTTAAATAATAGACTTTTGCTTCCTACAGTTTTTTATACCC
GATTTTAAAAGTGCATTCCCAGAGCTGCTGGTCAGACTCCTTTATCGAAGAAAGCTGAAG
ATTTTTAAAAACCGTGAATGCTTGCTTCCTCTGTGCTGTTCATCTGATGTGGAAATGTTT
TCCCCTCTCATTTTCACGAGTAAAGAGACTTAAGTAGCGGGAAGGATTCTTTTGGGAGTG
TTGCTGTGTATGCGTAGACATGTCACCTGCCTGCAGACCAGGCAGAGGCTGGTCAGAGGC
TTTTGGAAACCCTGCTGTGTCATTACTGGGTCGAATCTTCTGTGATCCCAGTTAGTTGGT
TTTGCTTTTTGTCCTCACAGTTTCTTGGGAAATGGCTTGAAAGAATTGTTGGCCAGAAGT
GTTCAGAGCTCCTTTGTAGAGCAGATGGGCTGATGGCGGGTGGGGTTACTGAGGATCTGG
GGTTCGGGTGCCCATCCCCTGTGGCTAGCAGGGGCTCCCACACCCTGTTGTTTTATTTCC
AGTTGCTCAGAGGCACCTTGATGATGGATGATGAGCTCTGTGCAGTACTAATTCCCACCC
CCCATCCCCAAATTGTCACCTTCTGCCTTTTTAAGATTATGTGCTAATTTAATTTTGGCC
GAAAGTTTACTACCATTGGTGCTTCTGTTACCCTGCAAAGGGAATTCCAGAGCTGTGTGC
GTTTAAGCTGCCTAGAGCTTTTTCTCCCTTGACCGCCTTTCTAAAGAGCATCTCATTTTG
GTGTATGGTCATGTTCTATCCCTCTTGGAAATGAAAGAGGGTTTAAGCTAAAACTAAGAA
GAGTGTAGCCTTGGGACAAGACCCCACAGGTCCAGGGAACACGCTGGGCCCTCATTATTC
AAGGACAGTGCCCGATGCCCCCGGGCTCATGGCATTTTCTGCAGGGGATTTTTGTTAATT
TGCTAAATCCCCATGACCTTGTTTTTAACCATGTTTCCTGCCATTGAAGTGTATTTTTGA
AGCCTCAGACCTTCTAATCCAGTGCTGCATTCAAGGCAGTGATGCACGCTCCAATGTTAG
ACCTGCTTTGCAAGACCGGAGAGCTGTTTTCACAATGTTTTGAACCAACACTAGCCATTC
TAATACTCTTTCTCTTTCTCTTCTCTCCCTTCCTCAGTAAAACATTTGCAGAGGTGTCCA
TTTTGAATGGGGGAAAAACTATTTGGCTTTTTACCAAAGAGGTATTCTTTTTTTTGACAG
CAAAATTCTTTCAGCAAAAACTTAATTGGGGAACGATGGATTAAGAATGCATTTGTCAGG
GTTCCCTGGTAGCCTAGCAGTTAAGGATCCCATGTTGTCATTGCTGTGGTCCAGGTTTGA
TCCCTGGCCTGGGAACTTTTGCATGCCGTGGGTTCGACAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAGAATGCATTTGTCCAATCCACTTCTATAGGTGTTGAATCATATTTATGTGA
GTGAAATTTGGGGAGAATTAAGGAAATCCTTTGTGGTGAAGGATCCTGGGAAATTCTCAG
GTAAAAAAAGCTTGCAGCAGATGGGTAATATATGTCTTGAGAGCTATTTATAAGAAATTT
AAGGATTGTTTTGTTTTATTAAAGATTTAAATGTTTTTTACTTTGCAAAAAAAAAAAACT
ACAAAAGTTTTATAGTCACAACTTTGTTAATTTTTTAAAACTTTTTTGAAATAATTAGAT
GTAGCCAAATTACGTGGTTATGTTTTGCTATGTTAGAATTTAAAAACGTAATGTGTGTGG
TAAATCTACTGTTTGAAATTTATAATGGTCTCAGATAAGGTTGAATTTTTGATAACTTTT
AAAATAGTTACTTTTTTTCTTTCAGTCACAAAGGCAAATACGGATTTATATTTGTTCTTT
TTTTCTTGAATGCTAATTTTTCTACAAAGCGTCTGAAGTTGACCCGTCATTTCCTATGTA
GAAAACTTAAACTTGTTAACTCTGTACTTGAATAAAATTGAAAATGGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1546-1658, + strand, RNAz p=0.589127

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1546-1658, + strand, RNAz p=0.589127

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-1377, gnl|bosTau2|chr10 (4968021-4969382)
               

               
               1-1377, gnl|Hg17|chr5 (79472598-79471028)
               


               
               1508-2084, gnl|bosTau2|chr10 (4969368-4969949)
               

               
               1508-2084, gnl|Hg17|chr5 (79471042-79470480)
               

               
               1508-2084, gnl|Mm7|chr13 (89773646-89774216)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1377, gnl|bosTau2|chr10 (4968021-4969382)
               

               
               1-1377, gnl|Hg17|chr5 (79472598-79471028)
               


               
               1508-2084, gnl|bosTau2|chr10 (4969368-4969949)
               

               
               1508-2084, gnl|Hg17|chr5 (79471042-79470480)
               

               
               1508-2084, gnl|Mm7|chr13 (89773646-89774216)

Expressed library(ies): 17 entry(ies)

More info

Expressed library(ies): 17 entry(ies)

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               cbl (0.688784)
               

               
               fbs (0.526039)
               

               
               ova (0.387397)
               

               
               mgm (0.360685)
               

               
               fco (0.314416)
               

               
               cte (0.29274)
               

               
               clu (0.239292)
               

               
               mgp (0.230681)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               fhi (0.169578)
               

               
               fat (0.147427)
               

               
               csk (0.140746)
               

               
               che (0.136314)
               

               
               nmm (0.132802)
               

               
               thg (0.126791)
               

               
               pgl (0.118483)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.688784)
               

               
               fbs (0.526039)
               

               
               ova (0.387397)
               

               
               mgm (0.360685)
               

               
               fco (0.314416)
               

               
               cte (0.29274)
               

               
               clu (0.239292)
               

               
               mgp (0.230681)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               fhi (0.169578)
               

               
               fat (0.147427)
               

               
               csk (0.140746)
               

               
               che (0.136314)
               

               
               nmm (0.132802)
               

               
               thg (0.126791)
               

               
               pgl (0.118483)

	1-1377, gnl\|bosTau2\|chr10 (4968021-4969382)
	1-1377, gnl\|Hg17\|chr5 (79472598-79471028)

	1508-2084, gnl\|bosTau2\|chr10 (4969368-4969949)
	1508-2084, gnl\|Hg17\|chr5 (79471042-79470480)
	1508-2084, gnl\|Mm7\|chr13 (89773646-89774216)

	cbl (0.688784)
	fbs (0.526039)
	ova (0.387397)
	mgm (0.360685)
	fco (0.314416)
	cte (0.29274)
	clu (0.239292)
	mgp (0.230681)
	fcc (0.197785)
	nlu (0.191681)
	fhi (0.169578)
	fat (0.147427)
	csk (0.140746)
	che (0.136314)
	nmm (0.132802)
	thg (0.126791)
	pgl (0.118483)