Non-Coding RNA Search

Ss1.1-LyN1-MLN01D050049.5

Sequence:


               
               ACTGCGCCAGGGCCGCTGTCATCTTTCACCTAGCTCAGCTGATCGGTTGCCGCCGCCGCC
GCTGCCAGATTCCAGAAGCAAAGAACCACAAGCTGGTAAGATAGACATGGACGTGAATAT
CGCTCCGCTCCGCGCCTGGGACGATTTCTTCCCGGGCTCTGATCGCTTCGCCCGGCCAGA
CTTTAGGGACATTTCCAAATGGAACAACCGCGTGGTGAGCAACCTGCTCTATTATCAGAC
CAACTATCTGGTGGTGGCTGCCATGATGATTTCCGTCGTGGGGTTCCTGAGCCCCTTCAA
CATGATCCTTGGAGGCATTGTGGTGGTACTGGTATTCACGGGCTTTGTGTGGGCAGCCCA
CAATAAAGACATTCTCCGCCGGCTGAAGAAGCAGTACCCTACGGTGTTTGTCATGGTGGT
CATGCTGGCCAGCTACTTCCTCATATCCATGTTTGGGGGAGTCATGGTCTTTGTGTTCGG
CATCACTTTCCCTTTGCTGCTGATGTTTATCCACGCGTCGCTGAGACTCCGGAACCTCAA
GAACAAACTGGAGAATAAAATAGAGGGAATCGGTCTGAAGAGGACACCCATGGGCATTGT
CCTGGATGCCCTAGAACAGCAGGAAGAAAACATCAGCAAGTTCGCTGACTATATCAGTAA
AGTCAATGAGTAAATGGAGCTGACCTGGCGATAGGGTTGCTGCAGAAATCGACGTGCAGT
GTGCCCTTGTCCAGACCTATTTTCCGTTTGTGTTTCTGACGTAGGAGGTTCCTGCACCAT
CCAACCATCCGTGGCAGCGTGCACGTAGTGGCCATGCTGTTCACATCTCTGCTTTTACAG
AGAGCAGGCCTCAGAGACTGAAAAAACCACCCTCCTATTGTGTCTGAAGTTTCAGGTGTG
TTTATGGAAGCTGATAGGAAATGGAGCACACCTATTTTTTTTAAGGGGAATACAAATAAA
AGAATCATGGATTGTATAGCAACAATACAGTGATCTTGTGGGAAAAAATTCAATTGTAAA
ATATTGAGGCAGTATGAGTAAATGAAAAGACTGTTAAAGTAGATGATGTCATGCACTAGC
CTGTTTTAATCTGCCCCCCCCATCCTCCTCCTCCAAAAAATTTCCTTGTTAGAATTATAA
TGTGTAGGGTATATATTAGTTTTGTTTTTATTATTACGCTTTTAAGATCAAAGATGATCT
CCATCACTTTGCCTCCTGTTTGATGTGCAGTGGAAGTTGGATAAATCAGTTTCTAGTTTG
TTTACAAAGCTAGCTGTTTGTGAGAATATTTTGTCAACTTTTTGTCCGTTTTTGAAAGGC
TAGTAATGTGTTTGCACTAGCAGGCATTTGTTGCAGACTAAATGCCATCTTCTTTAAGGA
GGTTACAGTTCTGTAACCTGTATTATTCTCAATGGTTTGTTTAAAAAAAAAAAAAGAAAA
AATCAAAATAAAACTTGAGTTCTGTTAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTGCGCCAGGGCCGCTGTCATCTTTCACCTAGCTCAGCTGATCGGTTGCCGCCGCCGCC
GCTGCCAGATTCCAGAAGCAAAGAACCACAAGCTGGTAAGATAGACATGGACGTGAATAT
CGCTCCGCTCCGCGCCTGGGACGATTTCTTCCCGGGCTCTGATCGCTTCGCCCGGCCAGA
CTTTAGGGACATTTCCAAATGGAACAACCGCGTGGTGAGCAACCTGCTCTATTATCAGAC
CAACTATCTGGTGGTGGCTGCCATGATGATTTCCGTCGTGGGGTTCCTGAGCCCCTTCAA
CATGATCCTTGGAGGCATTGTGGTGGTACTGGTATTCACGGGCTTTGTGTGGGCAGCCCA
CAATAAAGACATTCTCCGCCGGCTGAAGAAGCAGTACCCTACGGTGTTTGTCATGGTGGT
CATGCTGGCCAGCTACTTCCTCATATCCATGTTTGGGGGAGTCATGGTCTTTGTGTTCGG
CATCACTTTCCCTTTGCTGCTGATGTTTATCCACGCGTCGCTGAGACTCCGGAACCTCAA
GAACAAACTGGAGAATAAAATAGAGGGAATCGGTCTGAAGAGGACACCCATGGGCATTGT
CCTGGATGCCCTAGAACAGCAGGAAGAAAACATCAGCAAGTTCGCTGACTATATCAGTAA
AGTCAATGAGTAAATGGAGCTGACCTGGCGATAGGGTTGCTGCAGAAATCGACGTGCAGT
GTGCCCTTGTCCAGACCTATTTTCCGTTTGTGTTTCTGACGTAGGAGGTTCCTGCACCAT
CCAACCATCCGTGGCAGCGTGCACGTAGTGGCCATGCTGTTCACATCTCTGCTTTTACAG
AGAGCAGGCCTCAGAGACTGAAAAAACCACCCTCCTATTGTGTCTGAAGTTTCAGGTGTG
TTTATGGAAGCTGATAGGAAATGGAGCACACCTATTTTTTTTAAGGGGAATACAAATAAA
AGAATCATGGATTGTATAGCAACAATACAGTGATCTTGTGGGAAAAAATTCAATTGTAAA
ATATTGAGGCAGTATGAGTAAATGAAAAGACTGTTAAAGTAGATGATGTCATGCACTAGC
CTGTTTTAATCTGCCCCCCCCATCCTCCTCCTCCAAAAAATTTCCTTGTTAGAATTATAA
TGTGTAGGGTATATATTAGTTTTGTTTTTATTATTACGCTTTTAAGATCAAAGATGATCT
CCATCACTTTGCCTCCTGTTTGATGTGCAGTGGAAGTTGGATAAATCAGTTTCTAGTTTG
TTTACAAAGCTAGCTGTTTGTGAGAATATTTTGTCAACTTTTTGTCCGTTTTTGAAAGGC
TAGTAATGTGTTTGCACTAGCAGGCATTTGTTGCAGACTAAATGCCATCTTCTTTAAGGA
GGTTACAGTTCTGTAACCTGTATTATTCTCAATGGTTTGTTTAAAAAAAAAAAAAGAAAA
AATCAAAATAAAACTTGAGTTCTGTTAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q56P28_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q56P28_PIG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               117-236, - strand, RNAz p=0.92044
               

               
               550-669, - strand, RNAz p=0.556418

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               117-236, - strand, RNAz p=0.92044
               

               
               550-669, - strand, RNAz p=0.556418

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-284, gnl|bosTau2|chr22 (23486058-23485775)
               

               
               1-284, gnl|Hg17|chr3 (69216787-69217066)
               

               
               1-284, gnl|Mm7|chr6 (97298811-97299079)
               


               
               457-1440, gnl|bosTau2|chr22 (23465481-23464512)
               

               
               457-1440, gnl|Hg17|chr3 (69236238-69237229)
               

               
               457-1440, gnl|Mm7|chr6 (97320466-97321391)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-284, gnl|bosTau2|chr22 (23486058-23485775)
               

               
               1-284, gnl|Hg17|chr3 (69216787-69217066)
               

               
               1-284, gnl|Mm7|chr6 (97298811-97299079)
               


               
               457-1440, gnl|bosTau2|chr22 (23465481-23464512)
               

               
               457-1440, gnl|Hg17|chr3 (69236238-69237229)
               

               
               457-1440, gnl|Mm7|chr6 (97320466-97321391)

Expressed library(ies): 33 entry(ies)

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Expressed library(ies): 33 entry(ies)

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               hlv (0.557025)
               

               
               ldo (0.485013)
               

               
               nms (0.427716)
               

               
               amn (0.417711)
               

               
               ret (0.3862)
               

               
               fco (0.314416)
               

               
               lin (0.291206)
               

               
               spl (0.286369)
               

               
               ste (0.270416)
               

               
               lyg (0.266205)
               

               
               thg (0.253582)
               

               
               pgl (0.236967)
               

               
               ece (0.229305)
               

               
               cty (0.20816)
               

               
               hea (0.204499)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               tbr (0.154178)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

Expressed library(ies): 33 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.557025)
               

               
               ldo (0.485013)
               

               
               nms (0.427716)
               

               
               amn (0.417711)
               

               
               ret (0.3862)
               

               
               fco (0.314416)
               

               
               lin (0.291206)
               

               
               spl (0.286369)
               

               
               ste (0.270416)
               

               
               lyg (0.266205)
               

               
               thg (0.253582)
               

               
               pgl (0.236967)
               

               
               ece (0.229305)
               

               
               cty (0.20816)
               

               
               hea (0.204499)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               tbr (0.154178)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

	117-236, - strand, RNAz p=0.92044
	550-669, - strand, RNAz p=0.556418

	1-284, gnl\|bosTau2\|chr22 (23486058-23485775)
	1-284, gnl\|Hg17\|chr3 (69216787-69217066)
	1-284, gnl\|Mm7\|chr6 (97298811-97299079)

	457-1440, gnl\|bosTau2\|chr22 (23465481-23464512)
	457-1440, gnl\|Hg17\|chr3 (69236238-69237229)
	457-1440, gnl\|Mm7\|chr6 (97320466-97321391)

	hlv (0.557025)
	ldo (0.485013)
	nms (0.427716)
	amn (0.417711)
	ret (0.3862)
	fco (0.314416)
	lin (0.291206)
	spl (0.286369)
	ste (0.270416)
	lyg (0.266205)
	thg (0.253582)
	pgl (0.236967)
	ece (0.229305)
	cty (0.20816)
	hea (0.204499)
	cut (0.169924)
	fhi (0.169578)
	tbr (0.154178)
	ski (0.146735)
	liv (0.146284)
	nca (0.136874)
	ssp (0.13552)
	nmm (0.132802)
	kid (0.129735)
	ese (0.126502)
	bla (0.124347)
	tra (0.123092)
	eru (0.120048)
	med (0.116252)
	cbl (0.114797)
	jca (0.11396)
	spc (0.113366)
	eje (0.0988338)