Non-Coding RNA Search

Ss1.1-LyN1-MLN01D050070.5

Sequence:


               
               AGTTGATGGCAGTTTCAATAACAGGTCAGCACTGAGAAAAGGATAACACTGTAATATGCA
GAAATCAACAAATTCTGATACCTCTGTGGAAACACTGAATCCCACTCGACAAGCCACCGG
AGCTGTGCAAATGAGAATCAAAAATGCCAACAGCCACCACGACAGGCTGAGCCAAAGTAA
ATCCATGATCCTCACCGATGTTGGGAAGGTCACTGAACCTATATCCAGGCACAGAAGGAA
TCATTCACAGCATATCTTAAAAGATGTCATTCCTCCATTGGAACAATTGATGGTTGAAAA
AGAAGGTTATCTTCAAAAAGCTAAAATTGCAGATGGAGGAAAGAAACTAAGGAAAAACTG
GTCTACTTCCTGGGTTGTTCTTTCTAGTCGAAAAATTGAATTTTACAAAGAATCCAAACA
GCAGGCTCTGTCTAACATGAAAACTGGGCACAAACCAGAAAATATAGATTTGTGTGGAGC
ACAAATTGAATGGGCCAAGGAAAAATCAAGCAGAAAGAATGTCTTTCAGATCACAACAGT
ATCAGGAAATGAGTTTCTTCTTCAGTCAGATATTGACTTCATCATATTGGATTGGTTCCA
CGCTATCAAAAATGCAATTGACAGATTGCCAAAGGATCCAAGTACTCCTTCAAGAAACCT
GGAATTATTTAAAATTCAGAGATCCTCCAGTACTGAATTACTAAGTCACTATGACAGTGA
TATAAAAGAACAGAAACCAGAGCACAGAAAGTCTTTAATGTTCAGACTTCATCATAGTGC
TTCTGATACAAGCGACAAAAACCGAGTTAAAAGCAGATTAAAGAAGTTTATTACTCGAAG
ACCTTCTCTGAAAACTCTGCAAGAAAAAGGACTTATTAAAGATCAAATTTTTGGCTCTCA
TCTGCACACAGTGTGTGAACGTGAAAATTCCACAGTTCCGCGGTTTGTAAAGCAGTGCAT
TGAAGCTGTTGAAAAAAGAGGTCTGAATGTTGATGGAATATATCGAGTTAGTGGCAATCT
GGCAACAATACAGAAGTTAAGATTTATTGTCAACCAAGAAGAGAAGCTGAATTTGGACGA
CAGCCAGTGGGAGGACATCCACGTTGTCACCGGAGCACTGAAGATGTTTTTCCGGGAGCT
GCCTGAGCCGCTCTTCCCTTACAGCTTCTTTGAGCGGTTTGTGGAAGCGATCAAAAAGCA
AGACAATAACACAAGAATTGAAACCGTAAAGTCTCTTGTACAAAAACTCCCTCCACCAAA
TCGTGACACCATGAAAGTCCTCTTTAGACACCTAACAAAGATAGTGGCCAAAGCATCCAA
GAACCTCATGTCCACACAAAGCTTAGGGATTGTATTTGGACCCACCCTCCTGCGAGCTGA
AAATGAGGCAGGAAATATGGCAGTACACATGGTCTACCAGAACCAGATCGTGGAGCTCAT
GCTGAGTGAGTACAGTAAGATCTTCGGCTTGGAGGAAGACTGACAGACAAGACAAGTTAC
AGAGTATATTCACATCTGTCTCAATGCCTAATATTTTTACATTTCTGTAAACATATTTCT
GAAATATTTTTTTCCTTTCAAGCGACAGATGCCTCATTTTGTGAAAACTTAATGATGATT
TGGTGTTTAAGTTCCAAACATTTGAATAAAATAGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTTGATGGCAGTTTCAATAACAGGTCAGCACTGAGAAAAGGATAACACTGTAATATGCA
GAAATCAACAAATTCTGATACCTCTGTGGAAACACTGAATCCCACTCGACAAGCCACCGG
AGCTGTGCAAATGAGAATCAAAAATGCCAACAGCCACCACGACAGGCTGAGCCAAAGTAA
ATCCATGATCCTCACCGATGTTGGGAAGGTCACTGAACCTATATCCAGGCACAGAAGGAA
TCATTCACAGCATATCTTAAAAGATGTCATTCCTCCATTGGAACAATTGATGGTTGAAAA
AGAAGGTTATCTTCAAAAAGCTAAAATTGCAGATGGAGGAAAGAAACTAAGGAAAAACTG
GTCTACTTCCTGGGTTGTTCTTTCTAGTCGAAAAATTGAATTTTACAAAGAATCCAAACA
GCAGGCTCTGTCTAACATGAAAACTGGGCACAAACCAGAAAATATAGATTTGTGTGGAGC
ACAAATTGAATGGGCCAAGGAAAAATCAAGCAGAAAGAATGTCTTTCAGATCACAACAGT
ATCAGGAAATGAGTTTCTTCTTCAGTCAGATATTGACTTCATCATATTGGATTGGTTCCA
CGCTATCAAAAATGCAATTGACAGATTGCCAAAGGATCCAAGTACTCCTTCAAGAAACCT
GGAATTATTTAAAATTCAGAGATCCTCCAGTACTGAATTACTAAGTCACTATGACAGTGA
TATAAAAGAACAGAAACCAGAGCACAGAAAGTCTTTAATGTTCAGACTTCATCATAGTGC
TTCTGATACAAGCGACAAAAACCGAGTTAAAAGCAGATTAAAGAAGTTTATTACTCGAAG
ACCTTCTCTGAAAACTCTGCAAGAAAAAGGACTTATTAAAGATCAAATTTTTGGCTCTCA
TCTGCACACAGTGTGTGAACGTGAAAATTCCACAGTTCCGCGGTTTGTAAAGCAGTGCAT
TGAAGCTGTTGAAAAAAGAGGTCTGAATGTTGATGGAATATATCGAGTTAGTGGCAATCT
GGCAACAATACAGAAGTTAAGATTTATTGTCAACCAAGAAGAGAAGCTGAATTTGGACGA
CAGCCAGTGGGAGGACATCCACGTTGTCACCGGAGCACTGAAGATGTTTTTCCGGGAGCT
GCCTGAGCCGCTCTTCCCTTACAGCTTCTTTGAGCGGTTTGTGGAAGCGATCAAAAAGCA
AGACAATAACACAAGAATTGAAACCGTAAAGTCTCTTGTACAAAAACTCCCTCCACCAAA
TCGTGACACCATGAAAGTCCTCTTTAGACACCTAACAAAGATAGTGGCCAAAGCATCCAA
GAACCTCATGTCCACACAAAGCTTAGGGATTGTATTTGGACCCACCCTCCTGCGAGCTGA
AAATGAGGCAGGAAATATGGCAGTACACATGGTCTACCAGAACCAGATCGTGGAGCTCAT
GCTGAGTGAGTACAGTAAGATCTTCGGCTTGGAGGAAGACTGACAGACAAGACAAGTTAC
AGAGTATATTCACATCTGTCTCAATGCCTAATATTTTTACATTTCTGTAAACATATTTCT
GAAATATTTTTTTCCTTTCAAGCGACAGATGCCTCATTTTGTGAAAACTTAATGATGATT
TGGTGTTTAAGTTCCAAACATTTGAATAAAATAGTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|37572290|gb|AAH38976.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|37572290|gb|AAH38976.2|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               40-223, gnl|bosTau2|chr2 (10327536-10327719)
               

               
               40-223, gnl|Hg17|chr2 (143746776-143746959)
               

               
               40-223, gnl|Mm7|chr2 (43787926-43788108)
               


               
               818-1443, gnl|bosTau2|chrX (16370780-16371404)
               

               
               818-1443, gnl|Hg17|chr10 (32141704-32136623)
               

               
               818-1443, gnl|Mm7|chr18 (6237095-6230478)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               40-223, gnl|bosTau2|chr2 (10327536-10327719)
               

               
               40-223, gnl|Hg17|chr2 (143746776-143746959)
               

               
               40-223, gnl|Mm7|chr2 (43787926-43788108)
               


               
               818-1443, gnl|bosTau2|chrX (16370780-16371404)
               

               
               818-1443, gnl|Hg17|chr10 (32141704-32136623)
               

               
               818-1443, gnl|Mm7|chr18 (6237095-6230478)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               thg (0.760746)
               

               
               lin (0.291206)
               

               
               aor (0.195274)
               

               
               fty (0.17584)
               

               
               lnt (0.142308)
               

               
               cly (0.120642)
               

               
               cbl (0.114797)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.760746)
               

               
               lin (0.291206)
               

               
               aor (0.195274)
               

               
               fty (0.17584)
               

               
               lnt (0.142308)
               

               
               cly (0.120642)
               

               
               cbl (0.114797)

	40-223, gnl\|bosTau2\|chr2 (10327536-10327719)
	40-223, gnl\|Hg17\|chr2 (143746776-143746959)
	40-223, gnl\|Mm7\|chr2 (43787926-43788108)

	818-1443, gnl\|bosTau2\|chrX (16370780-16371404)
	818-1443, gnl\|Hg17\|chr10 (32141704-32136623)
	818-1443, gnl\|Mm7\|chr18 (6237095-6230478)

	thg (0.760746)
	lin (0.291206)
	aor (0.195274)
	fty (0.17584)
	lnt (0.142308)
	cly (0.120642)
	cbl (0.114797)