Non-Coding RNA Search

Ss1.1-LyN1-MLN01D060006.5

Sequence:


               
               CAAGACAGAACTGCGGAGGAGGAGTTGGGGAAAGCGGCTTTCGGGACCCCTCCTCTCCGT
CCCCCCCGCCCCAGCTGAGAGGCGCCTCGGCGGGTCTGAGGAATCGTCCTCCGTACTTCC
TCCAGCTTTTGCCGCCGCCGCCAGGGAGGAGGAGTTGGGGAAAGCGGCTTTCGGGACCCC
TCCTCTCCGTCCCCCCCGCCCCAGCTGAGAGGCGCCTCGGCGGGTCTGAGGAATCGTCCT
CCGTACTTCCTCCAGCTTTTGCCGCCGCCGCCAGGAGATCGGCCTGCTCGCCCGCAGCCC
TGCGCCCGCCGCCCCGCTGAGGAGTTGAAGAACATCTGTGATAAGTCTTCTATAAATTGA
ACTTTTTCAAGAATTCTCTTAAGGAGCCACGTAGGATTTTCTTACACCATGACTTAATCT
GAATGCAAGAACAAGAAATAGGTTTGCTCTCTAAATATAATGAAGGGCTGTGTATAAACA
CAGACCCTAACTCAATTCTAATGAGTATTTTAGACATGAGTTTACATCGGCAAATGGGTT
CGGATCGAGATCTTCAGTCTTCTGCATCATCTGTAAGCTTGCCTTCAGTCAAAAAGGCAC
CCAAAAAAAGAAGAATTTCAATAGGCTCTCTTTTTCGGAGGAAAAAGGAAAACAAACGTA
AATCAAGGGAGCTAAATGGCGGGGTGGATGGAATTGCGAGTATCGAAAGTATACATTCTG
AAATGTGTACTGATAAGAACTCCATTTTTTCTACAAATACCTCCTCTGACAATGGATTAA
CTTCCATCAGCAAACAAATTGGAGACTTCATAGAGTGCCCCTTGTGCCTTTTGCGGCATT
CTAAAGACAGATTTCCTGAGATAATGACTTGTCATCATAGATCTTGTGTGGATTGCTTGC
GACAATACCTAAGGATAGAAATTTCTGAAAGTAGAGTTAATATCAGTTGCCCAGAATGTA
CTGAACGGTTTAATCCCCATGATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAGACAGAACTGCGGAGGAGGAGTTGGGGAAAGCGGCTTTCGGGACCCCTCCTCTCCGT
CCCCCCCGCCCCAGCTGAGAGGCGCCTCGGCGGGTCTGAGGAATCGTCCTCCGTACTTCC
TCCAGCTTTTGCCGCCGCCGCCAGGGAGGAGGAGTTGGGGAAAGCGGCTTTCGGGACCCC
TCCTCTCCGTCCCCCCCGCCCCAGCTGAGAGGCGCCTCGGCGGGTCTGAGGAATCGTCCT
CCGTACTTCCTCCAGCTTTTGCCGCCGCCGCCAGGAGATCGGCCTGCTCGCCCGCAGCCC
TGCGCCCGCCGCCCCGCTGAGGAGTTGAAGAACATCTGTGATAAGTCTTCTATAAATTGA
ACTTTTTCAAGAATTCTCTTAAGGAGCCACGTAGGATTTTCTTACACCATGACTTAATCT
GAATGCAAGAACAAGAAATAGGTTTGCTCTCTAAATATAATGAAGGGCTGTGTATAAACA
CAGACCCTAACTCAATTCTAATGAGTATTTTAGACATGAGTTTACATCGGCAAATGGGTT
CGGATCGAGATCTTCAGTCTTCTGCATCATCTGTAAGCTTGCCTTCAGTCAAAAAGGCAC
CCAAAAAAAGAAGAATTTCAATAGGCTCTCTTTTTCGGAGGAAAAAGGAAAACAAACGTA
AATCAAGGGAGCTAAATGGCGGGGTGGATGGAATTGCGAGTATCGAAAGTATACATTCTG
AAATGTGTACTGATAAGAACTCCATTTTTTCTACAAATACCTCCTCTGACAATGGATTAA
CTTCCATCAGCAAACAAATTGGAGACTTCATAGAGTGCCCCTTGTGCCTTTTGCGGCATT
CTAAAGACAGATTTCCTGAGATAATGACTTGTCATCATAGATCTTGTGTGGATTGCTTGC
GACAATACCTAAGGATAGAAATTTCTGAAAGTAGAGTTAATATCAGTTGCCCAGAATGTA
CTGAACGGTTTAATCCCCATGATA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61822441|ref|XP_598617.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61822441|ref|XP_598617.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               407-566, - strand, RNAz p=0.781318
               

               
               687-966, - strand, RNAz p=0.863552

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               407-566, - strand, RNAz p=0.781318
               

               
               687-966, - strand, RNAz p=0.863552

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               329-984, gnl|bosTau2|chr14 (38085616-38084961)
               

               
               329-984, gnl|Hg17|chr8 (101369673-101369017)
               

               
               329-984, gnl|Mm7|chr15 (36375368-36374723)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               329-984, gnl|bosTau2|chr14 (38085616-38084961)
               

               
               329-984, gnl|Hg17|chr8 (101369673-101369017)
               

               
               329-984, gnl|Mm7|chr15 (36375368-36374723)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hlv (0.139256)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.139256)

	407-566, - strand, RNAz p=0.781318
	687-966, - strand, RNAz p=0.863552

	329-984, gnl\|bosTau2\|chr14 (38085616-38084961)
	329-984, gnl\|Hg17\|chr8 (101369673-101369017)
	329-984, gnl\|Mm7\|chr15 (36375368-36374723)