Ss1.1-LyN1-MLN01D060012.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TATCATGGAGCAAGCTGGCCATGATGGAAGGAGGGGGGACCCCCCCACACACATTTCCTT GGCTCCCCCCTCCAAGGGGACCATGCTGTGCGGGGAGCGCTGATGGCGTCCCCTCCCAGC TTCCCCTCAGGGTCCCCTGTCCTGCGACTCAGCCCCTGCCTGCACCGGAGCCTGGAAGGG CTCAACCAAGAGCTGGAGGAGGTGTTTGTGAAGGAGCAGGGCGAAGAGGAGCTGCTGCGG TTCATCTCGCTTTCACCCTACAATTGTCTTAAGCAGCAGCCCAGCCTGCCCAGCCCCAGG TGGGTCTTGGGGGAGGGGGAGAGCTGGCATTCCTCCAGGTGGCAAGTGGCGACTCTCGAC CCTCCACCTGCCCCAGGACTGGGTTGGATTAGAAAAATGCCTATTTTTCTTGTATCGATG TAGAAACTCTATTTTCTCCCAAAGACACTATTTTTGCAGCTGTTTGAAGTTTGTATATTT TCCGTACTGCAGAGCTTACACAAAATTGAAGAAGAATGTTGATGTTCAGGTTTTATTATC CTGTGTTTAGAAGTTTTTTTTTTTTTTTTGTTTTTTTTGTTTTTGTTTTGTTAATAGACC TGGTGTTAATAGACCAAATAAATAAGTATTCCCAGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TATCATGGAGCAAGCTGGCCATGATGGAAGGAGGGGGGACCCCCCCACACACATTTCCTT GGCTCCCCCCTCCAAGGGGACCATGCTGTGCGGGGAGCGCTGATGGCGTCCCCTCCCAGC TTCCCCTCAGGGTCCCCTGTCCTGCGACTCAGCCCCTGCCTGCACCGGAGCCTGGAAGGG CTCAACCAAGAGCTGGAGGAGGTGTTTGTGAAGGAGCAGGGCGAAGAGGAGCTGCTGCGG TTCATCTCGCTTTCACCCTACAATTGTCTTAAGCAGCAGCCCAGCCTGCCCAGCCCCAGG TGGGTCTTGGGGGAGGGGGAGAGCTGGCATTCCTCCAGGTGGCAAGTGGCGACTCTCGAC CCTCCACCTGCCCCAGGACTGGGTTGGATTAGAAAAATGCCTATTTTTCTTGTATCGATG TAGAAACTCTATTTTCTCCCAAAGACACTATTTTTGCAGCTGTTTGAAGTTTGTATATTT TCCGTACTGCAGAGCTTACACAAAATTGAAGAAGAATGTTGATGTTCAGGTTTTATTATC CTGTGTTTAGAAGTTTTTTTTTTTTTTTTGTTTTTTTTGTTTTTGTTTTGTTAATAGACC TGGTGTTAATAGACCAAATAAATAAGTATTCCCAGC |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 310-567, + strand, RNAz p=0.979074 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 310-567, + strand, RNAz p=0.979074 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_030802, + |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 105-240, gnl|bosTau2|chr19 (29671454-29671589) | |
| 105-240, gnl|canFam2|chr9 (29110232-29110329) | |
| 105-240, gnl|danRer3|chr19 (29615877-29615971) | |
| 105-240, gnl|dasNov1|scaffold_2789 (50345-50446) | |
| 105-240, gnl|echTel1|scaffold_180982 (237-337) | |
| 105-240, gnl|fr1|chrUn (140043606-140043683) | |
| 105-240, gnl|galGal2|chrUn (84998971-84999072) | |
| 105-240, gnl|hg17|chr17 (45152106-45152207) | |
| 105-240, gnl|Hg17|chr17 (45152256-45152121) | |
| 105-240, gnl|mm7|chr11 (95484818-95484718) | |
| 105-240, gnl|Mm7|chr11 (95484667-95484802) | |
| 105-240, gnl|monDom2|scaffold_18 (43939041-43938940) | |
| 105-240, gnl|panTro1|chr19_random (30758514-30758615) | |
| 105-240, gnl|rheMac2|chr16 (33953149-33953250) | |
| 105-240, gnl|rn3|chr10 (84075186-84075086) | |
| 105-240, gnl|tetNig1|chr3 (13630281-13630358) | |
| 241-600, gnl|bosTau2|chr19 (29677859-29678213) | |
| 241-600, gnl|canFam2|chr9 (29102910-29103143) | |
| 241-600, gnl|dasNov1|scaffold_2789 (43343-43580) | |
| 241-600, gnl|echTel1|scaffold_290748 (124854-125096) | |
| 241-600, gnl|galGal2|chrUn (84995868-84996085) | |
| 241-600, gnl|hg17|chr17 (45142696-45142929) | |
| 241-600, gnl|Hg17|chr17 (45143060-45142719) | |
| 241-600, gnl|loxAfr1|scaffold_11993 (40268-40029) | |
| 241-600, gnl|mm7|chr11 (95490910-95490661) | |
| 241-600, gnl|Mm7|chr11 (95490500-95490890) | |
| 241-600, gnl|monDom2|scaffold_18 (43945930-43945667) | |
| 241-600, gnl|oryCun1|scaffold_166347 (4334-4095) | |
| 241-600, gnl|panTro1|chr19_random (30748954-30749188) | |
| 241-600, gnl|rheMac2|chr16 (33943362-33943596) | |
| 241-600, gnl|rn3|chr10 (84081419-84081168) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 105-240, gnl|bosTau2|chr19 (29671454-29671589) | |
| 105-240, gnl|canFam2|chr9 (29110232-29110329) | |
| 105-240, gnl|danRer3|chr19 (29615877-29615971) | |
| 105-240, gnl|dasNov1|scaffold_2789 (50345-50446) | |
| 105-240, gnl|echTel1|scaffold_180982 (237-337) | |
| 105-240, gnl|fr1|chrUn (140043606-140043683) | |
| 105-240, gnl|galGal2|chrUn (84998971-84999072) | |
| 105-240, gnl|hg17|chr17 (45152106-45152207) | |
| 105-240, gnl|Hg17|chr17 (45152256-45152121) | |
| 105-240, gnl|mm7|chr11 (95484818-95484718) | |
| 105-240, gnl|Mm7|chr11 (95484667-95484802) | |
| 105-240, gnl|monDom2|scaffold_18 (43939041-43938940) | |
| 105-240, gnl|panTro1|chr19_random (30758514-30758615) | |
| 105-240, gnl|rheMac2|chr16 (33953149-33953250) | |
| 105-240, gnl|rn3|chr10 (84075186-84075086) | |
| 105-240, gnl|tetNig1|chr3 (13630281-13630358) | |
| 241-600, gnl|bosTau2|chr19 (29677859-29678213) | |
| 241-600, gnl|canFam2|chr9 (29102910-29103143) | |
| 241-600, gnl|dasNov1|scaffold_2789 (43343-43580) | |
| 241-600, gnl|echTel1|scaffold_290748 (124854-125096) | |
| 241-600, gnl|galGal2|chrUn (84995868-84996085) | |
| 241-600, gnl|hg17|chr17 (45142696-45142929) | |
| 241-600, gnl|Hg17|chr17 (45143060-45142719) | |
| 241-600, gnl|loxAfr1|scaffold_11993 (40268-40029) | |
| 241-600, gnl|mm7|chr11 (95490910-95490661) | |
| 241-600, gnl|Mm7|chr11 (95490500-95490890) | |
| 241-600, gnl|monDom2|scaffold_18 (43945930-43945667) | |
| 241-600, gnl|oryCun1|scaffold_166347 (4334-4095) | |
| 241-600, gnl|panTro1|chr19_random (30748954-30749188) | |
| 241-600, gnl|rheMac2|chr16 (33943362-33943596) | |
| 241-600, gnl|rn3|chr10 (84081419-84081168) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| sto (0.179824) | |
| ton (0.1755) | |
| cje (0.165235) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| ute (0.132784) | |
| ese (0.126502) | |
| eje (0.0988338) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sto (0.179824) | |
| ton (0.1755) | |
| cje (0.165235) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| ute (0.132784) | |
| ese (0.126502) | |
| eje (0.0988338) |