Ss1.1-LyN1-MLN01D060069.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTTTTCCAACGAGCTGGCGGGGGCTAAAGATGGCGACGCCCCTCGGGTGGTCGCAGGGG GGGTCAGGATCGGTGTGTCTCGCCTTCGATCAACTGCGGGACGTGATTGAGTCTCAGGAG GAACTGATCCACCAGCTGAGAAACGTGATGGTTCTCCAGGACGAAAATTTTGTCAGTAAA GAAGAGTTCCAGGCAGTGGAAAAAAAGCTGGTGGAAGAGAAAGCTGCCCATGCCAAGACC AAGGTCCTCCTGGCCAAGGAAGAGGAGAAGCTGCAGTTTGCCCTCGGAGAGGTAGAGGTG CTGTCCAAACAGCTGGAGAAAGAGAAGCTGGCCTTTGAAAAGGCGCTCTCCAGTGTCAAG AGCAGAGCCCTGCAGGAGTCCAGCAAGAAGGACCAGCTCATCACCAAGTGCAATGAAATT GAGTCTCACATTATAAAGCAAGAAGATATACTTAATGGCAAAGAGAATGAGATTAAGGAG TTGCAGCAAGTTATCAGCCAGCAGAAAGAGATCTTCAGGAATCACATGTCTGACTTCCGG ATCCAGAAGCAGCAGGAGAACTACATGGCCCAGGTGCTGGACCAGAAGCATAAGAGAGCC TCAGGGACGCGTCAGGCCCGGAGCCACCAGCGTCCCAGGGAAAAATAAAATGGTTGTCGC CTTCCCGTTATCTGGCTGTAATGCCCAACCTCTGCCTTCTCTGCTGTGGGGGTCCCCGTC CTGACCCTTCCTGTCCCTGTGGGTTCCTCCCTCAGGCCTCACAGCGCCCGGGACCCCAGA AGAGAGGCAGGGTAAGAGGCAAAAGGCACTCTCCTTCCTACCCGCCTGCTGCAAGCTGCA CCAACCCACCAGGCCGCTCCCGGACTCAAAAGTCTGAGGATGCTCCCCAGGTCTCTGGCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTTTTCCAACGAGCTGGCGGGGGCTAAAGATGGCGACGCCCCTCGGGTGGTCGCAGGGG GGGTCAGGATCGGTGTGTCTCGCCTTCGATCAACTGCGGGACGTGATTGAGTCTCAGGAG GAACTGATCCACCAGCTGAGAAACGTGATGGTTCTCCAGGACGAAAATTTTGTCAGTAAA GAAGAGTTCCAGGCAGTGGAAAAAAAGCTGGTGGAAGAGAAAGCTGCCCATGCCAAGACC AAGGTCCTCCTGGCCAAGGAAGAGGAGAAGCTGCAGTTTGCCCTCGGAGAGGTAGAGGTG CTGTCCAAACAGCTGGAGAAAGAGAAGCTGGCCTTTGAAAAGGCGCTCTCCAGTGTCAAG AGCAGAGCCCTGCAGGAGTCCAGCAAGAAGGACCAGCTCATCACCAAGTGCAATGAAATT GAGTCTCACATTATAAAGCAAGAAGATATACTTAATGGCAAAGAGAATGAGATTAAGGAG TTGCAGCAAGTTATCAGCCAGCAGAAAGAGATCTTCAGGAATCACATGTCTGACTTCCGG ATCCAGAAGCAGCAGGAGAACTACATGGCCCAGGTGCTGGACCAGAAGCATAAGAGAGCC TCAGGGACGCGTCAGGCCCGGAGCCACCAGCGTCCCAGGGAAAAATAAAATGGTTGTCGC CTTCCCGTTATCTGGCTGTAATGCCCAACCTCTGCCTTCTCTGCTGTGGGGGTCCCCGTC CTGACCCTTCCTGTCCCTGTGGGTTCCTCCCTCAGGCCTCACAGCGCCCGGGACCCCAGA AGAGAGGCAGGGTAAGAGGCAAAAGGCACTCTCCTTCCTACCCGCCTGCTGCAAGCTGCA CCAACCCACCAGGCCGCTCCCGGACTCAAAAGTCTGAGGATGCTCCCCAGGTCTCTGGCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 208-327, - strand, RNAz p=0.562543 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 208-327, - strand, RNAz p=0.562543 |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 4-147, gnl|bosTau2|chr7 (37303885-37303742) | |
| 4-147, gnl|canFam2|chr2 (37573978-37574625) | |
| 4-147, gnl|dasNov1|scaffold_13855 (10828-11507) | |
| 4-147, gnl|hg17|chr5 (138767164-138767815) | |
| 4-147, gnl|Hg17|chr5 (138767675-138767532) | |
| 4-147, gnl|loxAfr1|scaffold_25975 (32937-33612) | |
| 4-147, gnl|mm7|chr18 (36037771-36038370) | |
| 4-147, gnl|Mm7|chr18 (36038256-36038113) | |
| 4-147, gnl|monDom2|scaffold_6 (69681957-69681329) | |
| 4-147, gnl|panTro1|chr4 (145370698-145371349) | |
| 4-147, gnl|rheMac2|chr6 (135825415-135826063) | |
| 4-147, gnl|rn3|chr18 (28307417-28308033) | |
| 208-345, gnl|bosTau2|chr7 (37302405-37302268) | |
| 208-345, gnl|canFam2|chr2 (37572560-37572878) | |
| 208-345, gnl|dasNov1|scaffold_13855 (9312-9642) | |
| 208-345, gnl|hg17|chr5 (138765299-138765623) | |
| 208-345, gnl|Hg17|chr5 (138765639-138765502) | |
| 208-345, gnl|loxAfr1|scaffold_5645 (29742-30067) | |
| 208-345, gnl|mm7|chr18 (36036340-36036665) | |
| 208-345, gnl|Mm7|chr18 (36036681-36036544) | |
| 208-345, gnl|monDom2|scaffold_6 (69687383-69687045) | |
| 208-345, gnl|oryCun1|scaffold_149448 (1552-1231) | |
| 208-345, gnl|panTro1|chr4 (145367788-145368112) | |
| 208-345, gnl|rheMac2|chr6 (135823263-135823582) | |
| 208-345, gnl|rn3|chr18 (28305993-28306319) | |
| 516-900, gnl|bosTau2|chr7 (37299247-37298869) | |
| 516-900, gnl|Mm7|chr18 (36032948-36032567) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 4-147, gnl|bosTau2|chr7 (37303885-37303742) | |
| 4-147, gnl|canFam2|chr2 (37573978-37574625) | |
| 4-147, gnl|dasNov1|scaffold_13855 (10828-11507) | |
| 4-147, gnl|hg17|chr5 (138767164-138767815) | |
| 4-147, gnl|Hg17|chr5 (138767675-138767532) | |
| 4-147, gnl|loxAfr1|scaffold_25975 (32937-33612) | |
| 4-147, gnl|mm7|chr18 (36037771-36038370) | |
| 4-147, gnl|Mm7|chr18 (36038256-36038113) | |
| 4-147, gnl|monDom2|scaffold_6 (69681957-69681329) | |
| 4-147, gnl|panTro1|chr4 (145370698-145371349) | |
| 4-147, gnl|rheMac2|chr6 (135825415-135826063) | |
| 4-147, gnl|rn3|chr18 (28307417-28308033) | |
| 208-345, gnl|bosTau2|chr7 (37302405-37302268) | |
| 208-345, gnl|canFam2|chr2 (37572560-37572878) | |
| 208-345, gnl|dasNov1|scaffold_13855 (9312-9642) | |
| 208-345, gnl|hg17|chr5 (138765299-138765623) | |
| 208-345, gnl|Hg17|chr5 (138765639-138765502) | |
| 208-345, gnl|loxAfr1|scaffold_5645 (29742-30067) | |
| 208-345, gnl|mm7|chr18 (36036340-36036665) | |
| 208-345, gnl|Mm7|chr18 (36036681-36036544) | |
| 208-345, gnl|monDom2|scaffold_6 (69687383-69687045) | |
| 208-345, gnl|oryCun1|scaffold_149448 (1552-1231) | |
| 208-345, gnl|panTro1|chr4 (145367788-145368112) | |
| 208-345, gnl|rheMac2|chr6 (135823263-135823582) | |
| 208-345, gnl|rn3|chr18 (28305993-28306319) | |
| 516-900, gnl|bosTau2|chr7 (37299247-37298869) | |
| 516-900, gnl|Mm7|chr18 (36032948-36032567) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| tes (1.03907) | |
| cte (0.29274) | |
| cga (0.279096) | |
| hea (0.204499) | |
| sin (0.174948) | |
| mcp (0.170648) | |
| bfe (0.149858) | |
| hlv (0.139256) | |
| lyg (0.133103) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (1.03907) | |
| cte (0.29274) | |
| cga (0.279096) | |
| hea (0.204499) | |
| sin (0.174948) | |
| mcp (0.170648) | |
| bfe (0.149858) | |
| hlv (0.139256) | |
| lyg (0.133103) |