Non-Coding RNA Search

Ss1.1-LyN1-MLN01D070033.5

Sequence:


               
               GCCCCGGATGGGGAAGGAGGCGGGCGGCCGCCCTCGCCCGGCCGCGCACCCCTAGGAACT
CGCGGGCAGGAACTTGGCTATATTGTCCTGCCTCAGAGAACAAACTCATCTACTAAAGGT
CTAGCCTGGGTTCTGCCTTTGAAAGCAAGGGAAGGTTGGTACCATATCAACCACATTCAA
CATGAAATTTCCAGAGAGGTCTTATTTCAAAACTTTATAAAGAACAAGAACCACATGGAC
TTCTACAACGGAGATTGAACTAGCCTGAGTTTGAGCAAAAGGATAATGTGTTCACAGCCT
GTAACTAACACCAAAGAGGCCAAGTGGCAGAAGGTCTTGTATGAGCGACAGCCCTTTCCT
GATAACTATGTGGACCGAAGGTTCCTGGAAGAGCTCCGGAAAAACATCTATGCCCGGAAA
TACCAGTATTGGGCTGTAGTATTTGAGTCCAGTGTGGTGATCCAGCAGCTATGCAGTGTC
TGTGTTTTTGTGGTTATCTGGTGGTATATGGATGAGGGTCTTCTGGCACCCCACTGGCTT
TTCGGGACTGGCCTGGCCTCTTCATTGATTGGCTATGTTTTGTTTGATCTCATTGATGGA
GGTGAAGGACGGAAGAAGAGTGGGCGGACCCGGTGGGCTGACTTGAAGAGTGCCCTAGTT
TTCATTACTTTCACATACGGCTTTTCACCGGTGCTGAAGACCCTGACAGAGTCTGTCAGC
ACTGACACCATCTATGCCATGTCAGTCTTCATGCTATTGGGCCACCTCATCTTCTTTGAC
TATGGTGCCAATGCTGCCATTGTATCCAGCACACTGTCCTTGAACATGGCCATCTTTGCT
TCTGTCTGCCTTGCCTCACGCCTGCCCCGGTCCCTACATGCCTTCATCATGGTGACATTT
GCCATCCAGATTTTTGCCCTGTGGCCCATGTTACAGAAAAAACTGAAGGCATGTACTCCC
TGCAGTTATGTGGGAGTCACACTGCTTTTTGCATTTTCAGCCTTGGGAGGCCTCCTGTCC
ATTAGTGTTGTGGGAGCCATACTCTTTGCCCTTCTGCTGGTTTCCATCTCATGTCTCTGT
CCTTTCTACCTCATTCGCTTGCAGCTGTTTAAAGAGAACATTCATGGGCCTTGGGATGAG
GCTGAAATCAAAGAAGACTTGTCCAGGTTCCTCAGCTGAGTTTGGTGACTTCCATTCTGT
TACTAAGACAAACTGATAGACTAGCCCTCCAACTAGTATAAGATTCGAAGGCAGAATTCC
ATTCTGGAAGCAGCATGCTGATGTGGGTGGGAGATCAGAAATCAAAAGAAAAAGTTAACC
AAAGGCTTGGGTGGTGAAGGTGCTTATCCTTTCTGTTATTTTGTGGCGGGAAAAGCTTTG
TGGGGCCCTCTTCAATTATTGCCTCTCATTCAATGTAACAAATGAAGTGATGTGGTTTCT
ATCTATTAAAAAAATTAACAACACAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCCGGATGGGGAAGGAGGCGGGCGGCCGCCCTCGCCCGGCCGCGCACCCCTAGGAACT
CGCGGGCAGGAACTTGGCTATATTGTCCTGCCTCAGAGAACAAACTCATCTACTAAAGGT
CTAGCCTGGGTTCTGCCTTTGAAAGCAAGGGAAGGTTGGTACCATATCAACCACATTCAA
CATGAAATTTCCAGAGAGGTCTTATTTCAAAACTTTATAAAGAACAAGAACCACATGGAC
TTCTACAACGGAGATTGAACTAGCCTGAGTTTGAGCAAAAGGATAATGTGTTCACAGCCT
GTAACTAACACCAAAGAGGCCAAGTGGCAGAAGGTCTTGTATGAGCGACAGCCCTTTCCT
GATAACTATGTGGACCGAAGGTTCCTGGAAGAGCTCCGGAAAAACATCTATGCCCGGAAA
TACCAGTATTGGGCTGTAGTATTTGAGTCCAGTGTGGTGATCCAGCAGCTATGCAGTGTC
TGTGTTTTTGTGGTTATCTGGTGGTATATGGATGAGGGTCTTCTGGCACCCCACTGGCTT
TTCGGGACTGGCCTGGCCTCTTCATTGATTGGCTATGTTTTGTTTGATCTCATTGATGGA
GGTGAAGGACGGAAGAAGAGTGGGCGGACCCGGTGGGCTGACTTGAAGAGTGCCCTAGTT
TTCATTACTTTCACATACGGCTTTTCACCGGTGCTGAAGACCCTGACAGAGTCTGTCAGC
ACTGACACCATCTATGCCATGTCAGTCTTCATGCTATTGGGCCACCTCATCTTCTTTGAC
TATGGTGCCAATGCTGCCATTGTATCCAGCACACTGTCCTTGAACATGGCCATCTTTGCT
TCTGTCTGCCTTGCCTCACGCCTGCCCCGGTCCCTACATGCCTTCATCATGGTGACATTT
GCCATCCAGATTTTTGCCCTGTGGCCCATGTTACAGAAAAAACTGAAGGCATGTACTCCC
TGCAGTTATGTGGGAGTCACACTGCTTTTTGCATTTTCAGCCTTGGGAGGCCTCCTGTCC
ATTAGTGTTGTGGGAGCCATACTCTTTGCCCTTCTGCTGGTTTCCATCTCATGTCTCTGT
CCTTTCTACCTCATTCGCTTGCAGCTGTTTAAAGAGAACATTCATGGGCCTTGGGATGAG
GCTGAAATCAAAGAAGACTTGTCCAGGTTCCTCAGCTGAGTTTGGTGACTTCCATTCTGT
TACTAAGACAAACTGATAGACTAGCCCTCCAACTAGTATAAGATTCGAAGGCAGAATTCC
ATTCTGGAAGCAGCATGCTGATGTGGGTGGGAGATCAGAAATCAAAAGAAAAAGTTAACC
AAAGGCTTGGGTGGTGAAGGTGCTTATCCTTTCTGTTATTTTGTGGCGGGAAAAGCTTTG
TGGGGCCCTCTTCAATTATTGCCTCTCATTCAATGTAACAAATGAAGTGATGTGGTTTCT
ATCTATTAAAAAAATTAACAACACAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               PIGC_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               PIGC_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               618-977, - strand, RNAz p=0.987548

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               618-977, - strand, RNAz p=0.987548

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               68-1465, gnl|bosTau2|chr16 (28664562-28663165)
               

               
               68-1465, gnl|Hg17|chr1 (169143629-169142254)
               

               
               68-1465, gnl|Mm7|chr1 (161932897-161934385)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               68-1465, gnl|bosTau2|chr16 (28664562-28663165)
               

               
               68-1465, gnl|Hg17|chr1 (169143629-169142254)
               

               
               68-1465, gnl|Mm7|chr1 (161932897-161934385)

Expressed library(ies): 26 entry(ies)

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Expressed library(ies): 26 entry(ies)

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               cty (0.5204)
               

               
               pty (0.428143)
               

               
               nlu (0.383362)
               

               
               fhi (0.339155)
               

               
               tbr (0.308356)
               

               
               ssp (0.271039)
               

               
               ova (0.258264)
               

               
               ece (0.229305)
               

               
               tes (0.207814)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               fco (0.157208)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               cov (0.132153)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               cly (0.120642)

Expressed library(ies): 26 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.5204)
               

               
               pty (0.428143)
               

               
               nlu (0.383362)
               

               
               fhi (0.339155)
               

               
               tbr (0.308356)
               

               
               ssp (0.271039)
               

               
               ova (0.258264)
               

               
               ece (0.229305)
               

               
               tes (0.207814)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               fco (0.157208)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               cov (0.132153)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               cly (0.120642)

	68-1465, gnl\|bosTau2\|chr16 (28664562-28663165)
	68-1465, gnl\|Hg17\|chr1 (169143629-169142254)
	68-1465, gnl\|Mm7\|chr1 (161932897-161934385)

	cty (0.5204)
	pty (0.428143)
	nlu (0.383362)
	fhi (0.339155)
	tbr (0.308356)
	ssp (0.271039)
	ova (0.258264)
	ece (0.229305)
	tes (0.207814)
	ill (0.175593)
	fbs (0.175346)
	rec (0.17307)
	cut (0.169924)
	cje (0.165235)
	nco (0.161734)
	csp (0.161186)
	fco (0.157208)
	liv (0.146284)
	hyp (0.142837)
	hlv (0.139256)
	cov (0.132153)
	kid (0.129735)
	ret (0.128733)
	bla (0.124347)
	eep (0.122564)
	cly (0.120642)