Non-Coding RNA Search

Ss1.1-LyN1-MLN01D070070.5

Sequence:


               
               CGCCATTACCGCCGGGGCGGCCGAGCGCACTCGCGGAAGGAGCCTGGACGCCGGACCGGC
CGCGCCATGAGGTCCCTCCCCCGCCTGCTGCTGCTTCTCCTGCTCGTATTCCCCGCCACC
CTCCTGCTCCGAGGCGGCCCCGGAGGCTCCTTAGCAGTGGCTCAAGACCTTACAGAAGAT
GAAGAAACAGTGGAAGATTCTATCATTGAAGATGAAGATGATGAAGCAGAGGTGGAAGAG
GATGAACCCACAGACTTGGCTGAAGATAAAGAGGAAGAAGATGTATCTGGTGAACCTGAA
GCTTCACCCAGTGCAGATACCACCATCCTGTTTGTGAAGGGAGAAGACTTTCCGGCAAAT
AACATTGTCAAGTTCCTGGTGGGCTTCACGAACAAGGGTACAGAAGACTTCATCGTTGAA
TCCCTGGACGCCTCCTTCCGTTATCCTCAAGACTACCAGTTTTACATCCAGAACTTCACG
GCGCTTCCCCTGAACACTGTCGTGCCGCCGCAGAGACAGGCCACCTTTGAGTACTCCTTC
ATCCCTGCGGAGCCCATGGGCGGCCGGCCCTTTGGTCTGGTCATCAATCTCAACTACAAA
GACCTGAACGGCAATGTTTTCCAAGATGCTGTCTTCAATCAAACAGTTACAATTATCGAG
AGAGAGGATGGGTTAGATGGAGAAACAATCTTCATGTATATGTTCCTTGCTGGTCTCGGG
CTCTTGCTTGTTGTTGGCCTCCATCAACTCCTAGAATCCAGGAAGCGCAAGAGGCCCATC
CAGAAGGTGGAGACAGGCACGTCCAGTCAGAATGATGTCGACATGAGTTGGATTCCTCAG
GAAACTTTGAATCAGATCAATAAAGCTTCACCGAGAAGGTTGCCCAGGAAACGGGCACAG
AAGAGATCCGTGGGATCTGATGAGTAAATGTTCTTTGTGCAACAATTTGGTCTTTACTTA
ACCTGCCCTAATGTGTTTCGGCCTGATGGGAATTAGTGCAGAGAAGCCATATCACCATAG
ACGGCAACTGCTGCTTATGTGTGGACTGAGCAATCAGAGTCTGTGGCGATAATATTGTGG
AAAATGCACTGCATTTTTATTTTTCTAAAGTAACAAATGTGGTTTTTTTTAAACCATTAA
ACTGTGTGTGTGCGTGTGCATGTGTGTGAGCAGCGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCCATTACCGCCGGGGCGGCCGAGCGCACTCGCGGAAGGAGCCTGGACGCCGGACCGGC
CGCGCCATGAGGTCCCTCCCCCGCCTGCTGCTGCTTCTCCTGCTCGTATTCCCCGCCACC
CTCCTGCTCCGAGGCGGCCCCGGAGGCTCCTTAGCAGTGGCTCAAGACCTTACAGAAGAT
GAAGAAACAGTGGAAGATTCTATCATTGAAGATGAAGATGATGAAGCAGAGGTGGAAGAG
GATGAACCCACAGACTTGGCTGAAGATAAAGAGGAAGAAGATGTATCTGGTGAACCTGAA
GCTTCACCCAGTGCAGATACCACCATCCTGTTTGTGAAGGGAGAAGACTTTCCGGCAAAT
AACATTGTCAAGTTCCTGGTGGGCTTCACGAACAAGGGTACAGAAGACTTCATCGTTGAA
TCCCTGGACGCCTCCTTCCGTTATCCTCAAGACTACCAGTTTTACATCCAGAACTTCACG
GCGCTTCCCCTGAACACTGTCGTGCCGCCGCAGAGACAGGCCACCTTTGAGTACTCCTTC
ATCCCTGCGGAGCCCATGGGCGGCCGGCCCTTTGGTCTGGTCATCAATCTCAACTACAAA
GACCTGAACGGCAATGTTTTCCAAGATGCTGTCTTCAATCAAACAGTTACAATTATCGAG
AGAGAGGATGGGTTAGATGGAGAAACAATCTTCATGTATATGTTCCTTGCTGGTCTCGGG
CTCTTGCTTGTTGTTGGCCTCCATCAACTCCTAGAATCCAGGAAGCGCAAGAGGCCCATC
CAGAAGGTGGAGACAGGCACGTCCAGTCAGAATGATGTCGACATGAGTTGGATTCCTCAG
GAAACTTTGAATCAGATCAATAAAGCTTCACCGAGAAGGTTGCCCAGGAAACGGGCACAG
AAGAGATCCGTGGGATCTGATGAGTAAATGTTCTTTGTGCAACAATTTGGTCTTTACTTA
ACCTGCCCTAATGTGTTTCGGCCTGATGGGAATTAGTGCAGAGAAGCCATATCACCATAG
ACGGCAACTGCTGCTTATGTGTGGACTGAGCAATCAGAGTCTGTGGCGATAATATTGTGG
AAAATGCACTGCATTTTTATTTTTCTAAAGTAACAAATGTGGTTTTTTTTAAACCATTAA
ACTGTGTGTGTGCGTGTGCATGTGTGTGAGCAGCGG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               SSRA_CANFA

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               SSRA_CANFA

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               1-146, gnl|bosTau2|chr23 (40227235-40227380)
               

               
               1-146, gnl|Hg17|chr6 (7258418-7258273)
               

               
               1-146, gnl|Mm7|chr13 (37413118-37412974)
               


               
               427-995, gnl|bosTau2|chr12 (27336803-27336238)
               

               
               427-995, gnl|Hg17|chr13 (74608607-74609148)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-146, gnl|bosTau2|chr23 (40227235-40227380)
               

               
               1-146, gnl|Hg17|chr6 (7258418-7258273)
               

               
               1-146, gnl|Mm7|chr13 (37413118-37412974)
               


               
               427-995, gnl|bosTau2|chr12 (27336803-27336238)
               

               
               427-995, gnl|Hg17|chr13 (74608607-74609148)

Expressed library(ies): 42 entry(ies)

More info

Expressed library(ies): 42 entry(ies)

Help | Less info


               
               tes (0.623441)
               

               
               nje (0.49776)
               

               
               cag (0.453583)
               

               
               amn (0.417711)
               

               
               hea (0.408998)
               

               
               cut (0.339847)
               

               
               cte (0.29274)
               

               
               lnt (0.284616)
               

               
               pla (0.267344)
               

               
               ese (0.253004)
               

               
               mas (0.210305)
               

               
               fli (0.202881)
               

               
               jej (0.197844)
               

               
               eje (0.197668)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               rec (0.17307)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)

Expressed library(ies): 42 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.623441)
               

               
               nje (0.49776)
               

               
               cag (0.453583)
               

               
               amn (0.417711)
               

               
               hea (0.408998)
               

               
               cut (0.339847)
               

               
               cte (0.29274)
               

               
               lnt (0.284616)
               

               
               pla (0.267344)
               

               
               ese (0.253004)
               

               
               mas (0.210305)
               

               
               fli (0.202881)
               

               
               jej (0.197844)
               

               
               eje (0.197668)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               rec (0.17307)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)

	1-146, gnl\|bosTau2\|chr23 (40227235-40227380)
	1-146, gnl\|Hg17\|chr6 (7258418-7258273)
	1-146, gnl\|Mm7\|chr13 (37413118-37412974)

	427-995, gnl\|bosTau2\|chr12 (27336803-27336238)
	427-995, gnl\|Hg17\|chr13 (74608607-74609148)

	tes (0.623441)
	nje (0.49776)
	cag (0.453583)
	amn (0.417711)
	hea (0.408998)
	cut (0.339847)
	cte (0.29274)
	lnt (0.284616)
	pla (0.267344)
	ese (0.253004)
	mas (0.210305)
	fli (0.202881)
	jej (0.197844)
	eje (0.197668)
	aor (0.195274)
	cmu (0.186393)
	sag (0.182715)
	sto (0.179824)
	rec (0.17307)
	cje (0.165235)
	nco (0.161734)
	csp (0.161186)
	mga (0.160205)
	cli (0.152812)
	eli (0.151814)
	lun (0.150489)
	isp (0.150376)
	fat (0.147427)
	ski (0.146735)
	csk (0.140746)
	cst (0.140036)
	hlv (0.139256)
	nca (0.136874)
	ste (0.135208)
	lyg (0.133103)
	nmm (0.132802)
	cov (0.132153)
	ova (0.129132)
	tra (0.123092)
	eru (0.120048)
	pgl (0.118483)
	cty (0.10408)