Ss1.1-LyN1-MLN01D070094.5
|
TCGTTGAATTATAAAAGCAGACATCTTTTGCAAAGGCTTCAAACTAGGGGACAAAAGCAA
AAAGCGATGATGGCAGCCAAGTTAGTCTTATCAAGAGGTGTGACAGCTTCCTGAGGGATC
TCTGCCTGCTTTGTATTCTTTGTCTCAAATAATACCAACAAGTTTTATTTATAGGAGAAC
CAAGAGGCGGAGGATTGCGTTAGCGACAAACCAGTTCACGCCGGAGCCGCAGGTAGGCAG
CGTCGCGGTCGGACCCGGCCGCTGCGCGGGAGCCTGAGGAGAAGCTACCACCAGGCAAGA
GACCCCTCCGGGCCCCGGTGGACGCGTCGTCGCCGGCGCCGCAGCACCATGGGGAAGGGC
GACCCCAACAAGCCGCGGGGCAAGATGTCCTCGTACGCCTTCTTCGTGCAGACCTGCCGG
GAGGAGCACAAGAAGAAACACCCCGATTCCTCGGTCAACTTCGCCGAGTTCTCCAAGAAG
TGCTCCGAGCGATGGAAGACTATGTCTGCCAAGGAAAAGTCCAAGTTTGAAGATATGGCA
AAAAGTGACAAAGCTCGCTATGACCGGGAGATGAAAAATTACGTCCCTCCCAAGGGTGAC
AAGAAGGGCAAGAAAAAAGATCCCAATGCTCCCAAAAGGCCTCCATCTGCCTTCTTCCTG
TTTTGCTCTGAACATCGCCCAAAGATCAAAAGTGAACACCCTGGCTTATCCATTGGGGAT
ACTGCAAAGAAATTGGGTGAAATGTGGTCTGAGCAGTCAGCCAAAGATAAACAACCGTAT
GAACAGAAAGCAGCTAAGCTAAAGGAAAAATATGAAAAGGATATTGCTGCATACCGTGCC
AAGGGTAAGGGTGAAGCAGGAAAGAAGGGCCCTGGCAGGCCAACAGGCTCTAAGAAGAAG
AATGAACCAGAAGATGAGGAGGAAGAGGAAGAGGAGGAAGAAGATGAAGACGAGGAGGAA
GAAGATGAAGATGAGGAATAAATGGCTATCCTGTAATGTTGTGTGTGGAGTGTGTGTGTG
TGCTCAGGCAATTATTTTGCTAAGAATGTGAATTCAAGTGCAGCTCAATATTAGCTTCAG
TATAAAAACTGTACAGATTTTTGTATAGCTAATAAGATTCTTTGTAGAGAAAATACTTTT
TTTAAAAGTGCAGGTTGCAGCTTTTTGAGGGGCTACTACATACAGTTAGATTTTAAAGCT
TCTGATGTTGAATGTTTCTAAATATTTAATGGTTTCTTTAATTTCTTGTGTATGGTAACA
GCAAACTCGTAGAAATAAGTATCAATAGCAAATTTTGGGTTTTCTAGAATGTTGCATTTT
GTTTTTTAAAAAAATTTTGTAATAAAATTATGTATATTAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TCGTTGAATTATAAAAGCAGACATCTTTTGCAAAGGCTTCAAACTAGGGGACAAAAGCAA
AAAGCGATGATGGCAGCCAAGTTAGTCTTATCAAGAGGTGTGACAGCTTCCTGAGGGATC
TCTGCCTGCTTTGTATTCTTTGTCTCAAATAATACCAACAAGTTTTATTTATAGGAGAAC
CAAGAGGCGGAGGATTGCGTTAGCGACAAACCAGTTCACGCCGGAGCCGCAGGTAGGCAG
CGTCGCGGTCGGACCCGGCCGCTGCGCGGGAGCCTGAGGAGAAGCTACCACCAGGCAAGA
GACCCCTCCGGGCCCCGGTGGACGCGTCGTCGCCGGCGCCGCAGCACCATGGGGAAGGGC
GACCCCAACAAGCCGCGGGGCAAGATGTCCTCGTACGCCTTCTTCGTGCAGACCTGCCGG
GAGGAGCACAAGAAGAAACACCCCGATTCCTCGGTCAACTTCGCCGAGTTCTCCAAGAAG
TGCTCCGAGCGATGGAAGACTATGTCTGCCAAGGAAAAGTCCAAGTTTGAAGATATGGCA
AAAAGTGACAAAGCTCGCTATGACCGGGAGATGAAAAATTACGTCCCTCCCAAGGGTGAC
AAGAAGGGCAAGAAAAAAGATCCCAATGCTCCCAAAAGGCCTCCATCTGCCTTCTTCCTG
TTTTGCTCTGAACATCGCCCAAAGATCAAAAGTGAACACCCTGGCTTATCCATTGGGGAT
ACTGCAAAGAAATTGGGTGAAATGTGGTCTGAGCAGTCAGCCAAAGATAAACAACCGTAT
GAACAGAAAGCAGCTAAGCTAAAGGAAAAATATGAAAAGGATATTGCTGCATACCGTGCC
AAGGGTAAGGGTGAAGCAGGAAAGAAGGGCCCTGGCAGGCCAACAGGCTCTAAGAAGAAG
AATGAACCAGAAGATGAGGAGGAAGAGGAAGAGGAGGAAGAAGATGAAGACGAGGAGGAA
GAAGATGAAGATGAGGAATAAATGGCTATCCTGTAATGTTGTGTGTGGAGTGTGTGTGTG
TGCTCAGGCAATTATTTTGCTAAGAATGTGAATTCAAGTGCAGCTCAATATTAGCTTCAG
TATAAAAACTGTACAGATTTTTGTATAGCTAATAAGATTCTTTGTAGAGAAAATACTTTT
TTTAAAAGTGCAGGTTGCAGCTTTTTGAGGGGCTACTACATACAGTTAGATTTTAAAGCT
TCTGATGTTGAATGTTTCTAAATATTTAATGGTTTCTTTAATTTCTTGTGTATGGTAACA
GCAAACTCGTAGAAATAAGTATCAATAGCAAATTTTGGGTTTTCTAGAATGTTGCATTTT
GTTTTTTAAAAAAATTTTGTAATAAAATTATGTATATTAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
178-318, gnl|bosTau2|chr8 (3189321-3189183) |
|
178-318, gnl|Hg17|chr4 (174630269-174630127) |
|
178-318, gnl|Mm7|chr8 (55894684-55894810) |
| |
|
348-981, gnl|bosTau2|chr9 (62394251-62393606) |
|
348-981, gnl|Hg17|chr13 (29935818-29933494) |
|
348-981, gnl|Mm7|chr15 (74174884-74174236) |
| |
|
361-948, gnl|bosTau2|chr24 (17814040-17813466) |
|
361-948, gnl|Hg17|chr1 (161057674-161058262) |
|
361-948, gnl|Mm7|chr1 (4876231-4875648) |
| |
|
497-947, gnl|bosTau2|chr19 (6151962-6152394) |
|
497-947, gnl|Hg17|chr15 (69244662-69244188) |
|
497-947, gnl|Mm7|chr12 (49422500-49422966) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
178-318, gnl|bosTau2|chr8 (3189321-3189183) |
|
178-318, gnl|Hg17|chr4 (174630269-174630127) |
|
178-318, gnl|Mm7|chr8 (55894684-55894810) |
| |
|
348-981, gnl|bosTau2|chr9 (62394251-62393606) |
|
348-981, gnl|Hg17|chr13 (29935818-29933494) |
|
348-981, gnl|Mm7|chr15 (74174884-74174236) |
| |
|
361-948, gnl|bosTau2|chr24 (17814040-17813466) |
|
361-948, gnl|Hg17|chr1 (161057674-161058262) |
|
361-948, gnl|Mm7|chr1 (4876231-4875648) |
| |
|
497-947, gnl|bosTau2|chr19 (6151962-6152394) |
|
497-947, gnl|Hg17|chr15 (69244662-69244188) |
|
497-947, gnl|Mm7|chr12 (49422500-49422966) |
|
spl (1.28866) |
|
med (1.16252) |
|
ova (1.16219) |
|
fty (1.05504) |
|
thg (1.01433) |
|
nbm (0.993246) |
|
rec (0.692281) |
|
ecc (0.690211) |
|
aor (0.585823) |
|
cbl (0.573987) |
|
sag (0.548145) |
|
cje (0.495704) |
|
nco (0.485201) |
|
mga (0.480615) |
|
mgp (0.461361) |
|
eli (0.455443) |
|
pty (0.428143) |
|
csk (0.422238) |
|
che (0.408942) |
|
elu (0.385356) |
|
cmu (0.372787) |
|
eep (0.367692) |
|
ill (0.351185) |
|
eye (0.341006) |
|
spc (0.340097) |
|
csp (0.322373) |
|
isp (0.300752) |
|
eje (0.296501) |
|
cte (0.29274) |
|
liv (0.292569) |
|
lin (0.291206) |
|
lnt (0.284616) |
|
fce (0.271592) |
|
ese (0.253004) |
|
eru (0.240096) |
|
nms (0.213858) |
|
tes (0.207814) |
|
fli (0.202881) |
|
fcc (0.197785) |
|
nlu (0.191681) |
|
mgm (0.180343) |
|
gul (0.177588) |
|
fbs (0.175346) |
|
sin (0.174948) |
|
mcp (0.170648) |
|
cki (0.165235) |
|
bfe (0.149858) |
|
ski (0.146735) |
|
nca (0.136874) |
|
ste (0.135208) |
|
pla (0.133672) |
|
ret (0.128733) |
|
clu (0.119646) |
|
pgl (0.118483) |
|
jca (0.11396) |
|
jej (0.0989218) |
|
spl (1.28866) |
|
med (1.16252) |
|
ova (1.16219) |
|
fty (1.05504) |
|
thg (1.01433) |
|
nbm (0.993246) |
|
rec (0.692281) |
|
ecc (0.690211) |
|
aor (0.585823) |
|
cbl (0.573987) |
|
sag (0.548145) |
|
cje (0.495704) |
|
nco (0.485201) |
|
mga (0.480615) |
|
mgp (0.461361) |
|
eli (0.455443) |
|
pty (0.428143) |
|
csk (0.422238) |
|
che (0.408942) |
|
elu (0.385356) |
|
cmu (0.372787) |
|
eep (0.367692) |
|
ill (0.351185) |
|
eye (0.341006) |
|
spc (0.340097) |
|
csp (0.322373) |
|
isp (0.300752) |
|
eje (0.296501) |
|
cte (0.29274) |
|
liv (0.292569) |
|
lin (0.291206) |
|
lnt (0.284616) |
|
fce (0.271592) |
|
ese (0.253004) |
|
eru (0.240096) |
|
nms (0.213858) |
|
tes (0.207814) |
|
fli (0.202881) |
|
fcc (0.197785) |
|
nlu (0.191681) |
|
mgm (0.180343) |
|
gul (0.177588) |
|
fbs (0.175346) |
|
sin (0.174948) |
|
mcp (0.170648) |
|
cki (0.165235) |
|
bfe (0.149858) |
|
ski (0.146735) |
|
nca (0.136874) |
|
ste (0.135208) |
|
pla (0.133672) |
|
ret (0.128733) |
|
clu (0.119646) |
|
pgl (0.118483) |
|
jca (0.11396) |
|
jej (0.0989218) |
