Ss1.1-LyN1-MLN01D080003.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCGGAGCAGGGAACCATCAGGTCTTATTTTGCTTCCTCCCGGGCACTATGTAGTGCCGC CATCTTGAGCAGGAGTGCATTGTGGGAGGGCACCATTTTTCCGGAGAGAAAAAAAAAAAA CGGTTCCGGCATGCCACTGCTCGGCTTTTTCCTCAGCCGGGCCTCGGCGTGAGAGGCCGT GCAGGTTGTCTCTCTGAGCTATCCGGTACCATCCTCGTCGCTCCGGCGACATCTGCATCT GCTGCCGCCATGACTGAACAGATGACTCTCCGTGGCACCCTCAAGGGCCATAACGGCTGG GTGACCCAGATTGCTACCACTCCCCAGTTCCCGGACATGATACTGTCCGCTTCTCGAGAC AAGACCATCATCATGTGGAAGCTGACCAGAGATGAGACCAATTATGGAATCCCACAGCGT GCTCTTCGGGGTCACTCCCACTTTGTTAGTGACGTGGTCATCTCCTCAGATGGCCAGTTT GCCCTCTCGGGCTCCTGGGATGGAACCCTTCGCCTCTGGGATCTCACAACGGGCACCACC ACGCGCCGATTTGTAGGCCATACTAAGGATGTGCTGAGTGTGGCCTTCTCCTCTGACAAC CGACAAATTGTCTCTGGCTCCCGAGATAAAACCATCAAGCTATGGAATACTCTGGGTGTG TGCAAATACACTGTCCAGGATGAGAGCCACTCAGAGTGGGTGTCTTGTGTCCGCTTCTCA CCCAACAGCAGCAATCCCATTATTGTTTCCTGTGGCTGGGACAAGCTGGTCAAGGTATGG AACTTGGCTAACTGCAAGCTGAAAACCAATCACATCGGCCACACAGGCTACCTGAACACT GTGACTGTCTCTCCAGATGGATCCCTCTGTGCTTCTGGAGGCAAGGATGGCCAGGCCATG TTGTGGGACCTTAATGAAGGCAAGCACCTTTACACGCTAGATGGTGGGGATATCATCAAT GCCCTGTGCTTCAGTCCCAATCGCTACTGGCTCTGTGCTGCTACAGGCCCTAGCATCAAG ATCTGGGACTTGGAGGGCAAGATCATTGTAGATGAACTGAAGCAGGAAGTTATCAGTACC AGCAGCAAAGCAGAACCGCCCCAGTGTACCTCTCTGGCCTGGTCTGCTGATGGCCAGACT CTGTTTGCTGGCTACACAGACAACCTGGTGCGAGTGTGGCAGGTGACCATTGGCACCCGC TAGAAACATGGCAGAGCTTTAAAAATAAAAAAACTGGTTTTCTGAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCGGAGCAGGGAACCATCAGGTCTTATTTTGCTTCCTCCCGGGCACTATGTAGTGCCGC CATCTTGAGCAGGAGTGCATTGTGGGAGGGCACCATTTTTCCGGAGAGAAAAAAAAAAAA CGGTTCCGGCATGCCACTGCTCGGCTTTTTCCTCAGCCGGGCCTCGGCGTGAGAGGCCGT GCAGGTTGTCTCTCTGAGCTATCCGGTACCATCCTCGTCGCTCCGGCGACATCTGCATCT GCTGCCGCCATGACTGAACAGATGACTCTCCGTGGCACCCTCAAGGGCCATAACGGCTGG GTGACCCAGATTGCTACCACTCCCCAGTTCCCGGACATGATACTGTCCGCTTCTCGAGAC AAGACCATCATCATGTGGAAGCTGACCAGAGATGAGACCAATTATGGAATCCCACAGCGT GCTCTTCGGGGTCACTCCCACTTTGTTAGTGACGTGGTCATCTCCTCAGATGGCCAGTTT GCCCTCTCGGGCTCCTGGGATGGAACCCTTCGCCTCTGGGATCTCACAACGGGCACCACC ACGCGCCGATTTGTAGGCCATACTAAGGATGTGCTGAGTGTGGCCTTCTCCTCTGACAAC CGACAAATTGTCTCTGGCTCCCGAGATAAAACCATCAAGCTATGGAATACTCTGGGTGTG TGCAAATACACTGTCCAGGATGAGAGCCACTCAGAGTGGGTGTCTTGTGTCCGCTTCTCA CCCAACAGCAGCAATCCCATTATTGTTTCCTGTGGCTGGGACAAGCTGGTCAAGGTATGG AACTTGGCTAACTGCAAGCTGAAAACCAATCACATCGGCCACACAGGCTACCTGAACACT GTGACTGTCTCTCCAGATGGATCCCTCTGTGCTTCTGGAGGCAAGGATGGCCAGGCCATG TTGTGGGACCTTAATGAAGGCAAGCACCTTTACACGCTAGATGGTGGGGATATCATCAAT GCCCTGTGCTTCAGTCCCAATCGCTACTGGCTCTGTGCTGCTACAGGCCCTAGCATCAAG ATCTGGGACTTGGAGGGCAAGATCATTGTAGATGAACTGAAGCAGGAAGTTATCAGTACC AGCAGCAAAGCAGAACCGCCCCAGTGTACCTCTCTGGCCTGGTCTGCTGATGGCCAGACT CTGTTTGCTGGCTACACAGACAACCTGGTGCGAGTGTGGCAGGTGACCATTGGCACCCGC TAGAAACATGGCAGAGCTTTAAAAATAAAAAAACTGGTTTTCTGAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 531-649, + strand, RNAz p=0.563101 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 531-649, + strand, RNAz p=0.563101 |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 29-358, gnl|bosTau2|chr7 (27012733-27012404) | |
| 29-358, gnl|Hg17|chr5 (180603636-180603298) | |
| 29-358, gnl|Mm7|chr11 (48757005-48757325) | |
| 531-679, gnl|bosTau2|chr7 (27010503-27010355) | |
| 531-679, gnl|Hg17|chr5 (180601245-180601097) | |
| 531-679, gnl|Mm7|chr11 (48759026-48759174) | |
| 773-886, gnl|bosTau2|chr7 (27009601-27009488) | |
| 773-886, gnl|canFam2|chr11 (3430570-3430677) | |
| 773-886, gnl|canFam2|chr11 (3430681-3430595) | |
| 773-886, gnl|danRer3|chrNA (139121656-139121555) | |
| 773-886, gnl|danRer3|chrNA (139121556-139121637) | |
| 773-886, gnl|dasNov1|scaffold_4767 (62917-63024) | |
| 773-886, gnl|dasNov1|scaffold_4767 (63028-62942) | |
| 773-886, gnl|echTel1|scaffold_5256 (348-454) | |
| 773-886, gnl|echTel1|scaffold_5256 (458-373) | |
| 773-886, gnl|fr1|chrUn (114181567-114181668) | |
| 773-886, gnl|fr1|chrUn (114181667-114181586) | |
| 773-886, gnl|galGal2|chr16 (136910-136824) | |
| 773-886, gnl|hg17|chr4 (94100626-94100733) | |
| 773-886, gnl|hg17|chr5 (108148728-108148814) | |
| 773-886, gnl|Hg17|chr5 (180598785-180598672) | |
| 773-886, gnl|loxAfr1|scaffold_79111 (5440-5545) | |
| 773-886, gnl|loxAfr1|scaffold_79111 (5549-5465) | |
| 773-886, gnl|mm7|chr11 (48760721-48760615) | |
| 773-886, gnl|mm7|chr11 (48760615-48760696) | |
| 773-886, gnl|Mm7|chr11 (48760610-48760722) | |
| 773-886, gnl|monDom2|scaffold_43 (7043215-7043109) | |
| 773-886, gnl|monDom2|scaffold_43 (7043105-7043190) | |
| 773-886, gnl|oryCun1|scaffold_176834 (47177-47284) | |
| 773-886, gnl|oryCun1|scaffold_176834 (47283-47202) | |
| 773-886, gnl|panTro1|chr3 (110218417-110218524) | |
| 773-886, gnl|panTro1|chr4 (114213572-114213658) | |
| 773-886, gnl|rheMac2|chr5 (85792230-85792337) | |
| 773-886, gnl|rheMac2|chr6 (105135009-105135095) | |
| 773-886, gnl|rn3|chr3 (133129358-133129252) | |
| 773-886, gnl|rn3|chr3 (133129248-133129333) | |
| 773-886, gnl|tetNig1|chr1 (918392-918294) | |
| 773-886, gnl|tetNig1|chr1 (918292-918373) | |
| 773-886, gnl|xenTro1|scaffold_105 (54258-54151) | |
| 773-886, gnl|xenTro1|scaffold_105 (54147-54233) | |
| 909-1265, gnl|bosTau2|chr11 (76282636-76282982) | |
| 909-1265, gnl|Mm7|chr11 (48760933-48762837) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 29-358, gnl|bosTau2|chr7 (27012733-27012404) | |
| 29-358, gnl|Hg17|chr5 (180603636-180603298) | |
| 29-358, gnl|Mm7|chr11 (48757005-48757325) | |
| 531-679, gnl|bosTau2|chr7 (27010503-27010355) | |
| 531-679, gnl|Hg17|chr5 (180601245-180601097) | |
| 531-679, gnl|Mm7|chr11 (48759026-48759174) | |
| 773-886, gnl|bosTau2|chr7 (27009601-27009488) | |
| 773-886, gnl|canFam2|chr11 (3430570-3430677) | |
| 773-886, gnl|canFam2|chr11 (3430681-3430595) | |
| 773-886, gnl|danRer3|chrNA (139121656-139121555) | |
| 773-886, gnl|danRer3|chrNA (139121556-139121637) | |
| 773-886, gnl|dasNov1|scaffold_4767 (62917-63024) | |
| 773-886, gnl|dasNov1|scaffold_4767 (63028-62942) | |
| 773-886, gnl|echTel1|scaffold_5256 (348-454) | |
| 773-886, gnl|echTel1|scaffold_5256 (458-373) | |
| 773-886, gnl|fr1|chrUn (114181567-114181668) | |
| 773-886, gnl|fr1|chrUn (114181667-114181586) | |
| 773-886, gnl|galGal2|chr16 (136910-136824) | |
| 773-886, gnl|hg17|chr4 (94100626-94100733) | |
| 773-886, gnl|hg17|chr5 (108148728-108148814) | |
| 773-886, gnl|Hg17|chr5 (180598785-180598672) | |
| 773-886, gnl|loxAfr1|scaffold_79111 (5440-5545) | |
| 773-886, gnl|loxAfr1|scaffold_79111 (5549-5465) | |
| 773-886, gnl|mm7|chr11 (48760721-48760615) | |
| 773-886, gnl|mm7|chr11 (48760615-48760696) | |
| 773-886, gnl|Mm7|chr11 (48760610-48760722) | |
| 773-886, gnl|monDom2|scaffold_43 (7043215-7043109) | |
| 773-886, gnl|monDom2|scaffold_43 (7043105-7043190) | |
| 773-886, gnl|oryCun1|scaffold_176834 (47177-47284) | |
| 773-886, gnl|oryCun1|scaffold_176834 (47283-47202) | |
| 773-886, gnl|panTro1|chr3 (110218417-110218524) | |
| 773-886, gnl|panTro1|chr4 (114213572-114213658) | |
| 773-886, gnl|rheMac2|chr5 (85792230-85792337) | |
| 773-886, gnl|rheMac2|chr6 (105135009-105135095) | |
| 773-886, gnl|rn3|chr3 (133129358-133129252) | |
| 773-886, gnl|rn3|chr3 (133129248-133129333) | |
| 773-886, gnl|tetNig1|chr1 (918392-918294) | |
| 773-886, gnl|tetNig1|chr1 (918292-918373) | |
| 773-886, gnl|xenTro1|scaffold_105 (54258-54151) | |
| 773-886, gnl|xenTro1|scaffold_105 (54147-54233) | |
| 909-1265, gnl|bosTau2|chr11 (76282636-76282982) | |
| 909-1265, gnl|Mm7|chr11 (48760933-48762837) |
| Expressed library(ies): 81 entry(ies) | More info |
| Expressed library(ies): 81 entry(ies) | Help | Less info |
| cly (5.67017) | |
| cov (4.49319) | |
| cga (3.34915) | |
| eep (3.30923) | |
| mcp (3.24232) | |
| cag (3.17508) | |
| fty (3.16511) | |
| ese (3.16256) | |
| eru (3.0012) | |
| nco (2.91121) | |
| csp (2.90135) | |
| eje (2.56968) | |
| cbl (2.18115) | |
| col (2.14509) | |
| ecc (2.07063) | |
| lnt (1.99232) | |
| nbm (1.88717) | |
| med (1.86003) | |
| nmm (1.85923) | |
| nep (1.83925) | |
| ece (1.83444) | |
| cli (1.83374) | |
| nca (1.64249) | |
| jca (1.59544) | |
| elu (1.54143) | |
| ebs (1.53792) | |
| bla (1.49217) | |
| che (1.36314) | |
| amn (1.25313) | |
| ton (1.2285) | |
| hea (1.22699) | |
| ski (1.17388) | |
| nje (1.16144) | |
| pty (1.14172) | |
| hlv (1.11405) | |
| lyg (1.06482) | |
| mas (1.05152) | |
| duo (1.03681) | |
| fat (1.03199) | |
| nlu (0.958405) | |
| eli (0.910885) | |
| ill (0.877963) | |
| fhi (0.847889) | |
| cst (0.840218) | |
| clu (0.837521) | |
| cut (0.679694) | |
| ldo (0.679018) | |
| ssp (0.677599) | |
| ute (0.663922) | |
| ova (0.645661) | |
| fcc (0.593354) | |
| spl (0.572738) | |
| hyp (0.571347) | |
| fce (0.543183) | |
| gul (0.532765) | |
| fbs (0.526039) | |
| sin (0.524843) | |
| pro (0.512033) | |
| sug (0.509165) | |
| cje (0.495704) | |
| jej (0.494609) | |
| pgl (0.473934) | |
| isp (0.451128) | |
| nms (0.427716) | |
| fli (0.405762) | |
| tra (0.369276) | |
| eye (0.341006) | |
| vin (0.332557) | |
| cki (0.330469) | |
| ctl (0.306138) | |
| pla (0.267344) | |
| thg (0.253582) | |
| aor (0.195274) | |
| cmu (0.186393) | |
| sag (0.182715) | |
| mgm (0.180343) | |
| sto (0.179824) | |
| mga (0.160205) | |
| lun (0.150489) | |
| ret (0.128733) | |
| cty (0.10408) |
| Expressed library(ies): 81 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cly (5.67017) | |
| cov (4.49319) | |
| cga (3.34915) | |
| eep (3.30923) | |
| mcp (3.24232) | |
| cag (3.17508) | |
| fty (3.16511) | |
| ese (3.16256) | |
| eru (3.0012) | |
| nco (2.91121) | |
| csp (2.90135) | |
| eje (2.56968) | |
| cbl (2.18115) | |
| col (2.14509) | |
| ecc (2.07063) | |
| lnt (1.99232) | |
| nbm (1.88717) | |
| med (1.86003) | |
| nmm (1.85923) | |
| nep (1.83925) | |
| ece (1.83444) | |
| cli (1.83374) | |
| nca (1.64249) | |
| jca (1.59544) | |
| elu (1.54143) | |
| ebs (1.53792) | |
| bla (1.49217) | |
| che (1.36314) | |
| amn (1.25313) | |
| ton (1.2285) | |
| hea (1.22699) | |
| ski (1.17388) | |
| nje (1.16144) | |
| pty (1.14172) | |
| hlv (1.11405) | |
| lyg (1.06482) | |
| mas (1.05152) | |
| duo (1.03681) | |
| fat (1.03199) | |
| nlu (0.958405) | |
| eli (0.910885) | |
| ill (0.877963) | |
| fhi (0.847889) | |
| cst (0.840218) | |
| clu (0.837521) | |
| cut (0.679694) | |
| ldo (0.679018) | |
| ssp (0.677599) | |
| ute (0.663922) | |
| ova (0.645661) | |
| fcc (0.593354) | |
| spl (0.572738) | |
| hyp (0.571347) | |
| fce (0.543183) | |
| gul (0.532765) | |
| fbs (0.526039) | |
| sin (0.524843) | |
| pro (0.512033) | |
| sug (0.509165) | |
| cje (0.495704) | |
| jej (0.494609) | |
| pgl (0.473934) | |
| isp (0.451128) | |
| nms (0.427716) | |
| fli (0.405762) | |
| tra (0.369276) | |
| eye (0.341006) | |
| vin (0.332557) | |
| cki (0.330469) | |
| ctl (0.306138) | |
| pla (0.267344) | |
| thg (0.253582) | |
| aor (0.195274) | |
| cmu (0.186393) | |
| sag (0.182715) | |
| mgm (0.180343) | |
| sto (0.179824) | |
| mga (0.160205) | |
| lun (0.150489) | |
| ret (0.128733) | |
| cty (0.10408) |