Ss1.1-LyN1-MLN01D080031.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGGAACGGCTGTTAGCTAGTGGTGGCTTCAAGGTCCCCGGCTGGTCGGGGCTCCAGTGC TCTGCTTCTCCCCTCTGAGCTGCTGCCTGGCCTGGTACAGAGGAAGTCATGGCGCTCCGG ATCACCAGGAACACGAAAATTAATGCTGAAAATAAGGCGAAGATCAGTATGGCAGGCGCA AAGCGCGTGCCTGTGGCCTCTGCTGCAACCTCTAAGCCCGGACTGAGGCCAAGAACTGCT CTTGGAGACATCGGTAACAAAGTCAGTGAACAGCCACAGGCCAAACTGCCTCTGAAAAAG GAAGCAAAAACTTTAGCTGCTGGAAAAGTTGTTGCTAAAAAACTACCGAAACCTCTGGAA AAGGCTCCTGTACCTGTATTAGAGCCCCAGCCAGAGAGGGAGCCCGAGCCTGAACTGGAG CCTGAACCAGAACCTGAGCCTGTTAAAGGAGAGAAACTTTCCCCTGAACCTATTTTGGTT GATACTCCCTCTCCAAGCCCCATGGAAACATCTGGCTGTGCCCCTGCAGAAGAATATTTG TGTCAGGCTTTCTCTGATGTAATTCTTGCAGTGAATGATGTGGATGCAGAAGATGGAGGG GATCCAAACCTTTGTAGTGAATATGTGAAAGATATCTATGATTATCTGAGACAACTTGAG GAAGAACAAGCAGTTAGACCAAAATACCTACTGGGTCGTGAAGTCACTGGAAACATGAGA GCCATCCTAATTGACTGGCTAGTGCAGGTTCAGATGAAATTCAGGTTACTACAGGAGACC ATGTACATGACAGTTTCCATTATTGATCGGTTCATGCAGGATAATTGTGTGCCCAAGAAG ATGCTCCAACTGGTTGGTGTCACTGCCATGTTTATTGCCAGCAAATATGAAGAAATGTAC CCTCCAGAAATTGGTGACTTTGCCTTTGTGACTGACAATACTTACACTAAGTACCAAATC AGGCAGATGGAAATGAAGATTCTAAGAGCATTAAATTTTTGTCTGGGTCGCCCTCTACCC CTGCATTTTCTTCGGAGAGCATCCAAGATTGGAGAGGTTGATGTTGAGTTACATACTTTG GCCAAATATCTGATGGAGCTAACTATGTTGGACTACGATATGGTGCACTTTCCTCCTTCT CAGATCGCAGCAGGAGCTTTTTGCCTATCCCTGAAGATTCTTGATAATGGTGAATGGACA CCAACTCTACAGCATTACCTGTCATACACTGAAGAATCCCTTCTTGTGGTTATGCAACAC TTGGCTAAGAATATCGTCGTGGTGAATCGAGGGCTTACAAAGCACATGACTATCAAGAAC AAGTATGCCACATCTAAGCATGCTAAGATCAGCACTCTAGCCCAGCTGAATTCAGCACTA GTTCAAGATTTAGCCAAGGCTGTGGCAAAGGTGTAACTTGTGAACTTCGGAATACTATAA TATCTACAAATAAAATTGGCACCATGTGCCATCTGTACATATTATATGTTACACTTATTT ACTTTTAATAAAGTTTGTAGTCCTTTTTACTTCTTAACTCATTTGAATGTGGCTATTTCC CACTTGAGGATAACTTAAAAGTTGTCTTAAAGGTACAGTGGAGAATGTTTTTTAAAAAAT GAAAACTGTTTTCAGTTACCTGGGAACCCAACTAATATATACAATTGGCTCTTCTTGTTT TATGTACTTGGCATAACTTAATTAATATGAGTTCATATAGTCTTGAAGCCATTTAATATC TTTATATGTTACACTGTATGTAAGCTCAGTCATCTTGAGAGAATCTGCTACCTAGTTCTA CACAAGGAAGAGTCTACCGTCTCAATCCTAGTCCCCTTGTTTTATATTTCCTCTGGTGGC TGCAGTCATAATCCTAAATAATCTACTTGTACCACTTTCTTAAATTATCAACTTTAGTAT CAACTTTTTCACTTGGAAAAATGAGAATTTTAATTTATATTCAAAACCTAATTTACTTTT TGTTTATTGGTTAAGAAAAATAAAACAATCCTTAGAACAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGGAACGGCTGTTAGCTAGTGGTGGCTTCAAGGTCCCCGGCTGGTCGGGGCTCCAGTGC TCTGCTTCTCCCCTCTGAGCTGCTGCCTGGCCTGGTACAGAGGAAGTCATGGCGCTCCGG ATCACCAGGAACACGAAAATTAATGCTGAAAATAAGGCGAAGATCAGTATGGCAGGCGCA AAGCGCGTGCCTGTGGCCTCTGCTGCAACCTCTAAGCCCGGACTGAGGCCAAGAACTGCT CTTGGAGACATCGGTAACAAAGTCAGTGAACAGCCACAGGCCAAACTGCCTCTGAAAAAG GAAGCAAAAACTTTAGCTGCTGGAAAAGTTGTTGCTAAAAAACTACCGAAACCTCTGGAA AAGGCTCCTGTACCTGTATTAGAGCCCCAGCCAGAGAGGGAGCCCGAGCCTGAACTGGAG CCTGAACCAGAACCTGAGCCTGTTAAAGGAGAGAAACTTTCCCCTGAACCTATTTTGGTT GATACTCCCTCTCCAAGCCCCATGGAAACATCTGGCTGTGCCCCTGCAGAAGAATATTTG TGTCAGGCTTTCTCTGATGTAATTCTTGCAGTGAATGATGTGGATGCAGAAGATGGAGGG GATCCAAACCTTTGTAGTGAATATGTGAAAGATATCTATGATTATCTGAGACAACTTGAG GAAGAACAAGCAGTTAGACCAAAATACCTACTGGGTCGTGAAGTCACTGGAAACATGAGA GCCATCCTAATTGACTGGCTAGTGCAGGTTCAGATGAAATTCAGGTTACTACAGGAGACC ATGTACATGACAGTTTCCATTATTGATCGGTTCATGCAGGATAATTGTGTGCCCAAGAAG ATGCTCCAACTGGTTGGTGTCACTGCCATGTTTATTGCCAGCAAATATGAAGAAATGTAC CCTCCAGAAATTGGTGACTTTGCCTTTGTGACTGACAATACTTACACTAAGTACCAAATC AGGCAGATGGAAATGAAGATTCTAAGAGCATTAAATTTTTGTCTGGGTCGCCCTCTACCC CTGCATTTTCTTCGGAGAGCATCCAAGATTGGAGAGGTTGATGTTGAGTTACATACTTTG GCCAAATATCTGATGGAGCTAACTATGTTGGACTACGATATGGTGCACTTTCCTCCTTCT CAGATCGCAGCAGGAGCTTTTTGCCTATCCCTGAAGATTCTTGATAATGGTGAATGGACA CCAACTCTACAGCATTACCTGTCATACACTGAAGAATCCCTTCTTGTGGTTATGCAACAC TTGGCTAAGAATATCGTCGTGGTGAATCGAGGGCTTACAAAGCACATGACTATCAAGAAC AAGTATGCCACATCTAAGCATGCTAAGATCAGCACTCTAGCCCAGCTGAATTCAGCACTA GTTCAAGATTTAGCCAAGGCTGTGGCAAAGGTGTAACTTGTGAACTTCGGAATACTATAA TATCTACAAATAAAATTGGCACCATGTGCCATCTGTACATATTATATGTTACACTTATTT ACTTTTAATAAAGTTTGTAGTCCTTTTTACTTCTTAACTCATTTGAATGTGGCTATTTCC CACTTGAGGATAACTTAAAAGTTGTCTTAAAGGTACAGTGGAGAATGTTTTTTAAAAAAT GAAAACTGTTTTCAGTTACCTGGGAACCCAACTAATATATACAATTGGCTCTTCTTGTTT TATGTACTTGGCATAACTTAATTAATATGAGTTCATATAGTCTTGAAGCCATTTAATATC TTTATATGTTACACTGTATGTAAGCTCAGTCATCTTGAGAGAATCTGCTACCTAGTTCTA CACAAGGAAGAGTCTACCGTCTCAATCCTAGTCCCCTTGTTTTATATTTCCTCTGGTGGC TGCAGTCATAATCCTAAATAATCTACTTGTACCACTTTCTTAAATTATCAACTTTAGTAT CAACTTTTTCACTTGGAAAAATGAGAATTTTAATTTATATTCAAAACCTAATTTACTTTT TGTTTATTGGTTAAGAAAAATAAAACAATCCTTAGAACAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1308-1534, - strand, RNAz p=0.958726 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1308-1534, - strand, RNAz p=0.958726 |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 129-301, gnl|bosTau2|chr20 (7310775-7310603) | |
| 129-301, gnl|Hg17|chr5 (68499490-68499662) | |
| 129-301, gnl|Mm7|chr13 (97891507-97891335) | |
| 477-661, gnl|bosTau2|chr20 (7308686-7308502) | |
| 477-661, gnl|Hg17|chr5 (68502852-68503036) | |
| 477-661, gnl|Mm7|chr13 (97889251-97889067) | |
| 815-1065, gnl|bosTau2|chr20 (7303571-7303321) | |
| 815-1065, gnl|Hg17|chr5 (68506455-68506705) | |
| 815-1065, gnl|Mm7|chr13 (97887002-97886752) | |
| 838-1058, gnl|bosTau2|chr10 (38264963-38264743) | |
| 838-1058, gnl|canFam2|chr30 (27048497-27048694) | |
| 838-1058, gnl|danRer3|chr7 (21351890-21352089) | |
| 838-1058, gnl|dasNov1|scaffold_3285 (96785-96587) | |
| 838-1058, gnl|echTel1|scaffold_218324 (6983-6785) | |
| 838-1058, gnl|fr1|chrUn (23812892-23812700) | |
| 838-1058, gnl|galGal2|chr10 (7593214-7593007) | |
| 838-1058, gnl|hg17|chr15 (57196166-57196363) | |
| 838-1058, gnl|Hg17|chr15 (57196199-57196419) | |
| 838-1058, gnl|loxAfr1|scaffold_5865 (24659-24857) | |
| 838-1058, gnl|mm7|chr9 (70442858-70442661) | |
| 838-1058, gnl|Mm7|chr9 (70442823-70442603) | |
| 838-1058, gnl|monDom2|scaffold_12 (37476981-37477179) | |
| 838-1058, gnl|oryCun1|scaffold_170302 (856-1053) | |
| 838-1058, gnl|panTro1|chr16 (57613015-57613212) | |
| 838-1058, gnl|rheMac2|chr7 (37486901-37487098) | |
| 838-1058, gnl|rn3|chr8 (74915384-74915187) | |
| 838-1058, gnl|tetNig1|chrUn_random (6581195-6581384) | |
| 838-1058, gnl|xenTro1|scaffold_297 (795440-795631) | |
| 1308-2014, gnl|bosTau2|chr20 (7302009-7301311) | |
| 1308-2014, gnl|Hg17|chr5 (68509106-68509819) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 129-301, gnl|bosTau2|chr20 (7310775-7310603) | |
| 129-301, gnl|Hg17|chr5 (68499490-68499662) | |
| 129-301, gnl|Mm7|chr13 (97891507-97891335) | |
| 477-661, gnl|bosTau2|chr20 (7308686-7308502) | |
| 477-661, gnl|Hg17|chr5 (68502852-68503036) | |
| 477-661, gnl|Mm7|chr13 (97889251-97889067) | |
| 815-1065, gnl|bosTau2|chr20 (7303571-7303321) | |
| 815-1065, gnl|Hg17|chr5 (68506455-68506705) | |
| 815-1065, gnl|Mm7|chr13 (97887002-97886752) | |
| 838-1058, gnl|bosTau2|chr10 (38264963-38264743) | |
| 838-1058, gnl|canFam2|chr30 (27048497-27048694) | |
| 838-1058, gnl|danRer3|chr7 (21351890-21352089) | |
| 838-1058, gnl|dasNov1|scaffold_3285 (96785-96587) | |
| 838-1058, gnl|echTel1|scaffold_218324 (6983-6785) | |
| 838-1058, gnl|fr1|chrUn (23812892-23812700) | |
| 838-1058, gnl|galGal2|chr10 (7593214-7593007) | |
| 838-1058, gnl|hg17|chr15 (57196166-57196363) | |
| 838-1058, gnl|Hg17|chr15 (57196199-57196419) | |
| 838-1058, gnl|loxAfr1|scaffold_5865 (24659-24857) | |
| 838-1058, gnl|mm7|chr9 (70442858-70442661) | |
| 838-1058, gnl|Mm7|chr9 (70442823-70442603) | |
| 838-1058, gnl|monDom2|scaffold_12 (37476981-37477179) | |
| 838-1058, gnl|oryCun1|scaffold_170302 (856-1053) | |
| 838-1058, gnl|panTro1|chr16 (57613015-57613212) | |
| 838-1058, gnl|rheMac2|chr7 (37486901-37487098) | |
| 838-1058, gnl|rn3|chr8 (74915384-74915187) | |
| 838-1058, gnl|tetNig1|chrUn_random (6581195-6581384) | |
| 838-1058, gnl|xenTro1|scaffold_297 (795440-795631) | |
| 1308-2014, gnl|bosTau2|chr20 (7302009-7301311) | |
| 1308-2014, gnl|Hg17|chr5 (68509106-68509819) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| sin (0.349895) | |
| rec (0.17307) | |
| lin (0.145603) | |
| spl (0.143184) | |
| nmm (0.132802) | |
| ova (0.129132) | |
| thg (0.126791) | |
| ese (0.126502) | |
| eep (0.122564) | |
| med (0.116252) | |
| jca (0.11396) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sin (0.349895) | |
| rec (0.17307) | |
| lin (0.145603) | |
| spl (0.143184) | |
| nmm (0.132802) | |
| ova (0.129132) | |
| thg (0.126791) | |
| ese (0.126502) | |
| eep (0.122564) | |
| med (0.116252) | |
| jca (0.11396) |