Non-Coding RNA Search

Ss1.1-LyN1-MLN01D080041.5

Sequence:


               
               TGTCAAAGCAGGAGGAGACCCCGAGCCCCGAGTGAGGCGCTCGGTCGTGGGCCGCACCAA
GCTGGACTAGTCACCCAACCTCTCGGGGCCTCCTCGTTGCTCACTGGAGAATACCCGCCC
GGAGGCCTCTGTGAAAGCTGAGCGCCCCTCTCCCTCCCACCGGGCCTCGCCCACTTGGTG
AGATAAGGCGGCTCTCAGGGGCCTGTTTTCCTCTTTCGGCTGCGCTCGGCCCCAGACCGC
CACCATGGGCCGCGTGATCCGTGGGCAGAGGAAGGGCGCCGGCTCCGTGTTCCGCGCGCA
CGTGAAGCACCGAAAAGGCGCCGCCCGTCTGCGCGCGGTGGACTTCGCCGAGCGACACGG
CTACATCAAGGGCATCGTGAAGGACATCATCCACGACCCGGGCCGCGGTGCGCCTCTGGC
CAAGGTGGTCTTCCGGGATCCGTACCGTTTTAAGAAGCGGACGGAGCTGTTCATCGCCGC
CGAGGGGATCCACACTGGCCAGTTCGTGTACTGTGGCAAGAAGGCCCAGCTCAACATCGG
CAATGTGCTCCCGGTGGGCACCATGCCCGAGGGCACCATCGTGTGTTGTCTGGAGGAGAA
GCCTGGTGACCGGGGCAAGCTGGCCAGAGCCTCGGGGAACTATGCTACCGTCATCTCCCA
CAACCCCGAGACAAAGAAGACCCGCGTGAAGCTGCCCTCAGGCTCTAAGAAGGTCATCTC
CTCGGCCAACAGGGCTGTGGTCGGTGTGGTGGCTGGAGGTGGCCGCATTGACAAGCCCAT
TCTGAAGGCCGGCCGTGCCTATCACAAGTATAAGGCCAAGAGGAATTGCTGGCCACGCGT
GCGGGGTGTGGCCATGAACCCTGTGGAGCATCCCTTTGGAGGTGGCAACCACCAGCACAT
TGGCAAACCCTCTACCATCCGCAGAGATGCCCCTGCTGGCCGGAAAGTGGGTCTCATTGC
TGCTCGCCGGACAGGGCGTCTCCGAGGAACCAAGACTGTGCAGGAGAAAGAGAACTAGGG
GCTGGGGGCTCAATAAAGCTTGTCCTTTTCACAACCAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTCAAAGCAGGAGGAGACCCCGAGCCCCGAGTGAGGCGCTCGGTCGTGGGCCGCACCAA
GCTGGACTAGTCACCCAACCTCTCGGGGCCTCCTCGTTGCTCACTGGAGAATACCCGCCC
GGAGGCCTCTGTGAAAGCTGAGCGCCCCTCTCCCTCCCACCGGGCCTCGCCCACTTGGTG
AGATAAGGCGGCTCTCAGGGGCCTGTTTTCCTCTTTCGGCTGCGCTCGGCCCCAGACCGC
CACCATGGGCCGCGTGATCCGTGGGCAGAGGAAGGGCGCCGGCTCCGTGTTCCGCGCGCA
CGTGAAGCACCGAAAAGGCGCCGCCCGTCTGCGCGCGGTGGACTTCGCCGAGCGACACGG
CTACATCAAGGGCATCGTGAAGGACATCATCCACGACCCGGGCCGCGGTGCGCCTCTGGC
CAAGGTGGTCTTCCGGGATCCGTACCGTTTTAAGAAGCGGACGGAGCTGTTCATCGCCGC
CGAGGGGATCCACACTGGCCAGTTCGTGTACTGTGGCAAGAAGGCCCAGCTCAACATCGG
CAATGTGCTCCCGGTGGGCACCATGCCCGAGGGCACCATCGTGTGTTGTCTGGAGGAGAA
GCCTGGTGACCGGGGCAAGCTGGCCAGAGCCTCGGGGAACTATGCTACCGTCATCTCCCA
CAACCCCGAGACAAAGAAGACCCGCGTGAAGCTGCCCTCAGGCTCTAAGAAGGTCATCTC
CTCGGCCAACAGGGCTGTGGTCGGTGTGGTGGCTGGAGGTGGCCGCATTGACAAGCCCAT
TCTGAAGGCCGGCCGTGCCTATCACAAGTATAAGGCCAAGAGGAATTGCTGGCCACGCGT
GCGGGGTGTGGCCATGAACCCTGTGGAGCATCCCTTTGGAGGTGGCAACCACCAGCACAT
TGGCAAACCCTCTACCATCCGCAGAGATGCCCCTGCTGGCCGGAAAGTGGGTCTCATTGC
TGCTCGCCGGACAGGGCGTCTCCGAGGAACCAAGACTGTGCAGGAGAAAGAGAACTAGGG
GCTGGGGGCTCAATAAAGCTTGTCCTTTTCACAACCAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q567Q7_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q567Q7_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               644-763, - strand, RNAz p=0.883452

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               644-763, - strand, RNAz p=0.883452

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               211-1080, gnl|bosTau2|chr12 (22220867-22219999)
               

               
               211-1080, gnl|Hg17|chr8 (145988326-145985964)
               

               
               211-1080, gnl|Mm7|chr15 (76986225-76988233)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               211-1080, gnl|bosTau2|chr12 (22220867-22219999)
               

               
               211-1080, gnl|Hg17|chr8 (145988326-145985964)
               

               
               211-1080, gnl|Mm7|chr15 (76986225-76988233)

Expressed library(ies): 60 entry(ies)

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Expressed library(ies): 60 entry(ies)

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               cly (3.61925)
               

               
               eje (3.45918)
               

               
               cag (3.17508)
               

               
               csp (2.57898)
               

               
               elu (2.31214)
               

               
               ese (2.27704)
               

               
               eep (2.20615)
               

               
               ill (2.10711)
               

               
               nep (2.02317)
               

               
               nco (1.94081)
               

               
               fli (1.82593)
               

               
               col (1.75507)
               

               
               lnt (1.7077)
               

               
               mcp (1.70648)
               

               
               cli (1.68093)
               

               
               ebs (1.65622)
               

               
               nca (1.64249)
               

               
               nbm (1.58919)
               

               
               cov (1.58583)
               

               
               pty (1.56986)
               

               
               cga (1.39548)
               

               
               ecc (1.38042)
               

               
               ece (1.37583)
               

               
               nje (1.32736)
               

               
               med (1.27877)
               

               
               amn (1.25313)
               

               
               eye (1.19352)
               

               
               eli (1.0627)
               

               
               fty (1.05504)
               

               
               jca (1.02564)
               

               
               eru (0.960384)
               

               
               ute (0.929491)
               

               
               jej (0.890296)
               

               
               nms (0.855432)
               

               
               fhi (0.847889)
               

               
               hlv (0.835538)
               

               
               nmm (0.796813)
               

               
               pgl (0.7109)
               

               
               ton (0.702001)
               

               
               fcc (0.593354)
               

               
               nlu (0.575043)
               

               
               hyp (0.571347)
               

               
               fce (0.543183)
               

               
               cje (0.495704)
               

               
               mas (0.42061)
               

               
               hea (0.408998)
               

               
               ssp (0.406559)
               

               
               bla (0.373042)
               

               
               duo (0.345602)
               

               
               cst (0.280073)
               

               
               che (0.272628)
               

               
               cty (0.20816)
               

               
               sin (0.174948)
               

               
               cut (0.169924)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               spc (0.113366)

Expressed library(ies): 60 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cly (3.61925)
               

               
               eje (3.45918)
               

               
               cag (3.17508)
               

               
               csp (2.57898)
               

               
               elu (2.31214)
               

               
               ese (2.27704)
               

               
               eep (2.20615)
               

               
               ill (2.10711)
               

               
               nep (2.02317)
               

               
               nco (1.94081)
               

               
               fli (1.82593)
               

               
               col (1.75507)
               

               
               lnt (1.7077)
               

               
               mcp (1.70648)
               

               
               cli (1.68093)
               

               
               ebs (1.65622)
               

               
               nca (1.64249)
               

               
               nbm (1.58919)
               

               
               cov (1.58583)
               

               
               pty (1.56986)
               

               
               cga (1.39548)
               

               
               ecc (1.38042)
               

               
               ece (1.37583)
               

               
               nje (1.32736)
               

               
               med (1.27877)
               

               
               amn (1.25313)
               

               
               eye (1.19352)
               

               
               eli (1.0627)
               

               
               fty (1.05504)
               

               
               jca (1.02564)
               

               
               eru (0.960384)
               

               
               ute (0.929491)
               

               
               jej (0.890296)
               

               
               nms (0.855432)
               

               
               fhi (0.847889)
               

               
               hlv (0.835538)
               

               
               nmm (0.796813)
               

               
               pgl (0.7109)
               

               
               ton (0.702001)
               

               
               fcc (0.593354)
               

               
               nlu (0.575043)
               

               
               hyp (0.571347)
               

               
               fce (0.543183)
               

               
               cje (0.495704)
               

               
               mas (0.42061)
               

               
               hea (0.408998)
               

               
               ssp (0.406559)
               

               
               bla (0.373042)
               

               
               duo (0.345602)
               

               
               cst (0.280073)
               

               
               che (0.272628)
               

               
               cty (0.20816)
               

               
               sin (0.174948)
               

               
               cut (0.169924)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               spc (0.113366)

	211-1080, gnl\|bosTau2\|chr12 (22220867-22219999)
	211-1080, gnl\|Hg17\|chr8 (145988326-145985964)
	211-1080, gnl\|Mm7\|chr15 (76986225-76988233)

	cly (3.61925)
	eje (3.45918)
	cag (3.17508)
	csp (2.57898)
	elu (2.31214)
	ese (2.27704)
	eep (2.20615)
	ill (2.10711)
	nep (2.02317)
	nco (1.94081)
	fli (1.82593)
	col (1.75507)
	lnt (1.7077)
	mcp (1.70648)
	cli (1.68093)
	ebs (1.65622)
	nca (1.64249)
	nbm (1.58919)
	cov (1.58583)
	pty (1.56986)
	cga (1.39548)
	ecc (1.38042)
	ece (1.37583)
	nje (1.32736)
	med (1.27877)
	amn (1.25313)
	eye (1.19352)
	eli (1.0627)
	fty (1.05504)
	jca (1.02564)
	eru (0.960384)
	ute (0.929491)
	jej (0.890296)
	nms (0.855432)
	fhi (0.847889)
	hlv (0.835538)
	nmm (0.796813)
	pgl (0.7109)
	ton (0.702001)
	fcc (0.593354)
	nlu (0.575043)
	hyp (0.571347)
	fce (0.543183)
	cje (0.495704)
	mas (0.42061)
	hea (0.408998)
	ssp (0.406559)
	bla (0.373042)
	duo (0.345602)
	cst (0.280073)
	che (0.272628)
	cty (0.20816)
	sin (0.174948)
	cut (0.169924)
	isp (0.150376)
	fat (0.147427)
	pla (0.133672)
	lyg (0.133103)
	ova (0.129132)
	spc (0.113366)