Non-Coding RNA Search

Ss1.1-LyN1-MLN01D090045.5

Sequence:


               
               AAGAGCAGAGGGGATCTTTCCTCGAAAAAGGTCCCAGCGATGGACACACGCGGAGTGGCC
GCGGCCATGAGGCCCCTGGTCCTGCTCGTTGCCTTCCTGTGCACCGCAGCCCCAGCCCTC
GACACCTGTCCAGAGGTCAAGGTGGTGGGTCTGGAGGGCTCGGACAAGCTCTCCATCCTC
CGAGGCTGCCCGGGGCTGCCTGGAGCCGCAGGGCCCAAGGGAGAGGCGGGCGCCGATGGA
CCGAAGGGAGGACAAGGCCCTCCCGGAGCCCCTGGGGAGCCAGGACCCCCCGGGCCCAAA
GGAGACCGAGGGGAGAAGGGCGAGCCTGGACCGAAAGGAGAGTCTTGGGAACCCGAGCAG
TGTCTCACAGGACCTCGGACCTGCAAGGAGCTGCTGACCAGGGGGCACTTTCTGAGCGGC
TGGCACACCATCTACCTGCCGGACTGCCAGCCCCTGACGGTGCTGTGTGACATGGACACG
GATGGCGGGGGGTGGACCGTTTTCCAGCGCAGGAGCGACGGGTCGGTGGACTTCTACCGG
GACTGGGCCGCGTACAAGCGGGGCTTCGGCAGTCAGCTGGGAGAGTTCTGGCTGGGGAAC
GACCACATCCACGCCCTGACGGCCCAGGGAACCAATGAGCTCCGGGTGGACCTCGTGGAC
TTCGAGGGCAACCACCAGTTTGCCAAGTACAGGTCCTTCCAGGTGGCAGGCGAGGCAGAG
AAGTACATGCTGGTCCTGGGAGCCTTCGTAGAGGGCAATGCAGGTGATTCCCTGACGTCC
CACAACAACAGCCTCTTCACCACCAAAGACCAGGACAACGACCAGTACGCCTCAAATTGT
GCAGTGCTGTACCAGGGAGCCTGGTGGTACAAGAGCTGTCACGTGTCCAACCTGAACGGC
CGCTACCTCGGGGGCTCGCACGGGAGCTTTGCAAACGGCGTCAACTGGAGTTCGGGGAAA
GGGTACAACTACAGCTACAAGGTGTCGGAGATGAAGTTTCGGGCCACCTAGGGCGGGACA
GTGCTTCCAGAGCCCTCCCTGCGGAGGGGCCACGGGGCTCCCGCTCACTATCCGCCCGGG
TGTGGAAGGGCCACATCCCAACCCCTGGGTGGGGGCCATGCCCTCTGCACCGCCACCAGC
TTCCAATCTTCTGTCCCTCTCAGGAGGACAAGAGTGACCACTACTCCAGCAACATGTATT
CTCAATAAAGACACTTGCTTACCCAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGAGCAGAGGGGATCTTTCCTCGAAAAAGGTCCCAGCGATGGACACACGCGGAGTGGCC
GCGGCCATGAGGCCCCTGGTCCTGCTCGTTGCCTTCCTGTGCACCGCAGCCCCAGCCCTC
GACACCTGTCCAGAGGTCAAGGTGGTGGGTCTGGAGGGCTCGGACAAGCTCTCCATCCTC
CGAGGCTGCCCGGGGCTGCCTGGAGCCGCAGGGCCCAAGGGAGAGGCGGGCGCCGATGGA
CCGAAGGGAGGACAAGGCCCTCCCGGAGCCCCTGGGGAGCCAGGACCCCCCGGGCCCAAA
GGAGACCGAGGGGAGAAGGGCGAGCCTGGACCGAAAGGAGAGTCTTGGGAACCCGAGCAG
TGTCTCACAGGACCTCGGACCTGCAAGGAGCTGCTGACCAGGGGGCACTTTCTGAGCGGC
TGGCACACCATCTACCTGCCGGACTGCCAGCCCCTGACGGTGCTGTGTGACATGGACACG
GATGGCGGGGGGTGGACCGTTTTCCAGCGCAGGAGCGACGGGTCGGTGGACTTCTACCGG
GACTGGGCCGCGTACAAGCGGGGCTTCGGCAGTCAGCTGGGAGAGTTCTGGCTGGGGAAC
GACCACATCCACGCCCTGACGGCCCAGGGAACCAATGAGCTCCGGGTGGACCTCGTGGAC
TTCGAGGGCAACCACCAGTTTGCCAAGTACAGGTCCTTCCAGGTGGCAGGCGAGGCAGAG
AAGTACATGCTGGTCCTGGGAGCCTTCGTAGAGGGCAATGCAGGTGATTCCCTGACGTCC
CACAACAACAGCCTCTTCACCACCAAAGACCAGGACAACGACCAGTACGCCTCAAATTGT
GCAGTGCTGTACCAGGGAGCCTGGTGGTACAAGAGCTGTCACGTGTCCAACCTGAACGGC
CGCTACCTCGGGGGCTCGCACGGGAGCTTTGCAAACGGCGTCAACTGGAGTTCGGGGAAA
GGGTACAACTACAGCTACAAGGTGTCGGAGATGAAGTTTCGGGCCACCTAGGGCGGGACA
GTGCTTCCAGAGCCCTCCCTGCGGAGGGGCCACGGGGCTCCCGCTCACTATCCGCCCGGG
TGTGGAAGGGCCACATCCCAACCCCTGGGTGGGGGCCATGCCCTCTGCACCGCCACCAGC
TTCCAATCTTCTGTCCCTCTCAGGAGGACAAGAGTGACCACTACTCCAGCAACATGTATT
CTCAATAAAGACACTTGCTTACCCAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q29041_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q29041_PIG

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               126-248, gnl|bosTau2|chr11 (86696137-86696259)
               

               
               126-248, gnl|Hg17|chr9 (135034260-135034138)
               

               
               126-248, gnl|Mm7|chr2 (28090338-28090216)
               


               
               364-500, gnl|bosTau2|chr11 (86700435-86700571)
               

               
               364-500, gnl|Hg17|chr9 (135030941-135030805)
               

               
               364-500, gnl|Mm7|chr2 (28087067-28086931)
               


               
               760-1012, gnl|bosTau2|chr11 (86703139-86703391)
               

               
               760-1012, gnl|Hg17|chr9 (135027840-135027588)
               

               
               760-1012, gnl|Mm7|chr2 (28084137-28083885)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               126-248, gnl|bosTau2|chr11 (86696137-86696259)
               

               
               126-248, gnl|Hg17|chr9 (135034260-135034138)
               

               
               126-248, gnl|Mm7|chr2 (28090338-28090216)
               


               
               364-500, gnl|bosTau2|chr11 (86700435-86700571)
               

               
               364-500, gnl|Hg17|chr9 (135030941-135030805)
               

               
               364-500, gnl|Mm7|chr2 (28087067-28086931)
               


               
               760-1012, gnl|bosTau2|chr11 (86703139-86703391)
               

               
               760-1012, gnl|Hg17|chr9 (135027840-135027588)
               

               
               760-1012, gnl|Mm7|chr2 (28084137-28083885)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               clu (2.51256)
               

               
               nje (2.32288)
               

               
               nco (1.13214)
               

               
               cly (1.08578)
               

               
               col (0.975039)
               

               
               jej (0.890296)
               

               
               cje (0.826173)
               

               
               duo (0.518403)
               

               
               eje (0.395335)
               

               
               cli (0.305623)
               

               
               lnt (0.284616)
               

               
               ill (0.175593)
               

               
               pty (0.142714)
               

               
               med (0.116252)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (2.51256)
               

               
               nje (2.32288)
               

               
               nco (1.13214)
               

               
               cly (1.08578)
               

               
               col (0.975039)
               

               
               jej (0.890296)
               

               
               cje (0.826173)
               

               
               duo (0.518403)
               

               
               eje (0.395335)
               

               
               cli (0.305623)
               

               
               lnt (0.284616)
               

               
               ill (0.175593)
               

               
               pty (0.142714)
               

               
               med (0.116252)

	126-248, gnl\|bosTau2\|chr11 (86696137-86696259)
	126-248, gnl\|Hg17\|chr9 (135034260-135034138)
	126-248, gnl\|Mm7\|chr2 (28090338-28090216)

	364-500, gnl\|bosTau2\|chr11 (86700435-86700571)
	364-500, gnl\|Hg17\|chr9 (135030941-135030805)
	364-500, gnl\|Mm7\|chr2 (28087067-28086931)

	760-1012, gnl\|bosTau2\|chr11 (86703139-86703391)
	760-1012, gnl\|Hg17\|chr9 (135027840-135027588)
	760-1012, gnl\|Mm7\|chr2 (28084137-28083885)

	clu (2.51256)
	nje (2.32288)
	nco (1.13214)
	cly (1.08578)
	col (0.975039)
	jej (0.890296)
	cje (0.826173)
	duo (0.518403)
	eje (0.395335)
	cli (0.305623)
	lnt (0.284616)
	ill (0.175593)
	pty (0.142714)
	med (0.116252)