Ss1.1-LyN1-MLN01D090047.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTGGAACAAATGAAGAGTTATTTATGTTAGTAGGACCGCCAGAAGTTCAGCTATAACCCA AAGAGGAAAAGGCCCAGTCTTCTCATCACCATGGGTGATTCTTTCTTTTCTTAGCTGGCA TGTGTCAAAGGCCAGCCATAAGAGAAAGTAAGGATTTTTCTTTTCAATAATCTTCCTTGG GAAGTTTCTGTGGCCTTTATTTAATTTCTAAGTACCTACTTGGGTGCCTACTTTGTATCA AATGAAGGCAAATGAGAAGAGCATTTCTATTTTTTTTTCAAAAGCAAATATATATAAATA CATATGCATATATGATCATATAATAGTAATGCCTTATGGAGAATTAAAGAGGTGGAAAGC AGCTCTGGTCCCTGGGCTTCCAACGTGGGTTAAAAGATAATCTTAATTGAAGAATTCAAT ACGTAAAGGGAGTGAGAGAACAAGCCTTAAAAGAGACTGCCCAATCTGGATCATTTAAAG AAAGCAAACAGAAGCAACTAATTAAAACTCTTGGAATGATATTTCTTCTCCTAATGATAA TTTTGGTGAAGTTGAGGTAAAATGCCATAATCCAGCTTTGCACAAGTCAATCTGTTTAAA AAACTTGGGAGATGTAAAGATAAATCTTACTAGTCTCTAGGCTACCCTAGTGGCTGTTTT GGTACCTCACAGTCTGTTAAAGGATCAGCTGGAATGATTGTGGTGAGAGCTATGGCCAAA CCAACCCAGTGAAAGAACTCTAAGAAGAAACAGAATAGTGTCTCCAAGATGGCACCTCAG GCTATCTATCAGTCTTTCCTTTTTCTGTTAACAGGTAAAATCTAAGAGAAGGGACTGCTG CTCCCCAGCGGGATGGGTATGAAATCAGCGCTGCTTCCATTCAATTAAGTTACAAGCGTT TGGATTGCTAATTTTTTTGGAAAGGCACTAAACACTGGTTGTGGCTTTTAATGAAGAAAC CATTTTACAGGGAAAGGGACGGAGCTTTGTTTGTTTTAGGGGTAGGGAAGTTTGGTGGCT GTTTGATGGGAAAAGGTTATGGATGAATGGATGTTAGAGAATATCAAGAATGTTAATGAG GTGGGAACCCTCCTGCTCATGGGGTTCTGAAGGTTGGTTTTAAAGCACTAAGGAAAGCTG AACCAAGGCTAGTTTTCTGGCTTTAAGAAAATCATTTCCAGGAGTTCCCGTTGTGGCCTA GCGGTTAACAAATCCGACTAGGAACCATGAGGTTGCGGGTTCGATCCCTGGCCCCGCTCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTGGAACAAATGAAGAGTTATTTATGTTAGTAGGACCGCCAGAAGTTCAGCTATAACCCA AAGAGGAAAAGGCCCAGTCTTCTCATCACCATGGGTGATTCTTTCTTTTCTTAGCTGGCA TGTGTCAAAGGCCAGCCATAAGAGAAAGTAAGGATTTTTCTTTTCAATAATCTTCCTTGG GAAGTTTCTGTGGCCTTTATTTAATTTCTAAGTACCTACTTGGGTGCCTACTTTGTATCA AATGAAGGCAAATGAGAAGAGCATTTCTATTTTTTTTTCAAAAGCAAATATATATAAATA CATATGCATATATGATCATATAATAGTAATGCCTTATGGAGAATTAAAGAGGTGGAAAGC AGCTCTGGTCCCTGGGCTTCCAACGTGGGTTAAAAGATAATCTTAATTGAAGAATTCAAT ACGTAAAGGGAGTGAGAGAACAAGCCTTAAAAGAGACTGCCCAATCTGGATCATTTAAAG AAAGCAAACAGAAGCAACTAATTAAAACTCTTGGAATGATATTTCTTCTCCTAATGATAA TTTTGGTGAAGTTGAGGTAAAATGCCATAATCCAGCTTTGCACAAGTCAATCTGTTTAAA AAACTTGGGAGATGTAAAGATAAATCTTACTAGTCTCTAGGCTACCCTAGTGGCTGTTTT GGTACCTCACAGTCTGTTAAAGGATCAGCTGGAATGATTGTGGTGAGAGCTATGGCCAAA CCAACCCAGTGAAAGAACTCTAAGAAGAAACAGAATAGTGTCTCCAAGATGGCACCTCAG GCTATCTATCAGTCTTTCCTTTTTCTGTTAACAGGTAAAATCTAAGAGAAGGGACTGCTG CTCCCCAGCGGGATGGGTATGAAATCAGCGCTGCTTCCATTCAATTAAGTTACAAGCGTT TGGATTGCTAATTTTTTTGGAAAGGCACTAAACACTGGTTGTGGCTTTTAATGAAGAAAC CATTTTACAGGGAAAGGGACGGAGCTTTGTTTGTTTTAGGGGTAGGGAAGTTTGGTGGCT GTTTGATGGGAAAAGGTTATGGATGAATGGATGTTAGAGAATATCAAGAATGTTAATGAG GTGGGAACCCTCCTGCTCATGGGGTTCTGAAGGTTGGTTTTAAAGCACTAAGGAAAGCTG AACCAAGGCTAGTTTTCTGGCTTTAAGAAAATCATTTCCAGGAGTTCCCGTTGTGGCCTA GCGGTTAACAAATCCGACTAGGAACCATGAGGTTGCGGGTTCGATCCCTGGCCCCGCTCA |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 41-212, + strand, RNAz p=0.991926 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 41-212, + strand, RNAz p=0.991926 |
| Predicted microRNA(s): 1 entry(ies) | More info |
| Predicted microRNA(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
| 131-221, + strand, RNAmicro p=0.974446 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 4-740, gnl|bosTau2|chr10 (50532569-50531805) | |
| 4-740, gnl|Hg17|chr14 (69909245-69908340) | |
| 4-740, gnl|Mm7|chr12 (79464596-79463654) | |
| 776-1180, gnl|bosTau2|chr10 (50531807-50531400) | |
| 776-1180, gnl|canFam2|chr8 (47077522-47078220) | |
| 776-1180, gnl|canFam2|chr8 (47077836-47078225) | |
| 776-1180, gnl|dasNov1|scaffold_4962 (15798-15453) | |
| 776-1180, gnl|dasNov1|scaffold_51337 (6727-6059) | |
| 776-1180, gnl|echTel1|scaffold_287589 (49366-50082) | |
| 776-1180, gnl|hg17|chr14 (69907096-69907867) | |
| 776-1180, gnl|Hg17|chr14 (69908342-69907611) | |
| 776-1180, gnl|hg17|chrX (136010180-136010588) | |
| 776-1180, gnl|loxAfr1|scaffold_1754 (144767-143953) | |
| 776-1180, gnl|loxAfr1|scaffold_1754 (144362-143950) | |
| 776-1180, gnl|mm7|chr12 (79462719-79463461) | |
| 776-1180, gnl|mm7|chr12 (79463089-79463513) | |
| 776-1180, gnl|Mm7|chr12 (79463656-79463180) | |
| 776-1180, gnl|oryCun1|scaffold_171395 (31285-30535) | |
| 776-1180, gnl|oryCun1|scaffold_198873 (80132-80513) | |
| 776-1180, gnl|panTro1|chr15 (69626399-69627170) | |
| 776-1180, gnl|panTro1|chrX (140667604-140668012) | |
| 776-1180, gnl|rheMac2|chr7 (133474696-133475515) | |
| 776-1180, gnl|rheMac2|chrX (135302510-135302918) | |
| 776-1180, gnl|rn3|chr6 (105358824-105359561) | |
| 776-1180, gnl|rn3|chr6 (105359178-105359579) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 4-740, gnl|bosTau2|chr10 (50532569-50531805) | |
| 4-740, gnl|Hg17|chr14 (69909245-69908340) | |
| 4-740, gnl|Mm7|chr12 (79464596-79463654) | |
| 776-1180, gnl|bosTau2|chr10 (50531807-50531400) | |
| 776-1180, gnl|canFam2|chr8 (47077522-47078220) | |
| 776-1180, gnl|canFam2|chr8 (47077836-47078225) | |
| 776-1180, gnl|dasNov1|scaffold_4962 (15798-15453) | |
| 776-1180, gnl|dasNov1|scaffold_51337 (6727-6059) | |
| 776-1180, gnl|echTel1|scaffold_287589 (49366-50082) | |
| 776-1180, gnl|hg17|chr14 (69907096-69907867) | |
| 776-1180, gnl|Hg17|chr14 (69908342-69907611) | |
| 776-1180, gnl|hg17|chrX (136010180-136010588) | |
| 776-1180, gnl|loxAfr1|scaffold_1754 (144767-143953) | |
| 776-1180, gnl|loxAfr1|scaffold_1754 (144362-143950) | |
| 776-1180, gnl|mm7|chr12 (79462719-79463461) | |
| 776-1180, gnl|mm7|chr12 (79463089-79463513) | |
| 776-1180, gnl|Mm7|chr12 (79463656-79463180) | |
| 776-1180, gnl|oryCun1|scaffold_171395 (31285-30535) | |
| 776-1180, gnl|oryCun1|scaffold_198873 (80132-80513) | |
| 776-1180, gnl|panTro1|chr15 (69626399-69627170) | |
| 776-1180, gnl|panTro1|chrX (140667604-140668012) | |
| 776-1180, gnl|rheMac2|chr7 (133474696-133475515) | |
| 776-1180, gnl|rheMac2|chrX (135302510-135302918) | |
| 776-1180, gnl|rn3|chr6 (105358824-105359561) | |
| 776-1180, gnl|rn3|chr6 (105359178-105359579) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| clu (0.239292) | |
| cut (0.169924) | |
| ste (0.135208) | |
| ute (0.132784) | |
| ova (0.129132) | |
| cty (0.10408) | |
| ldo (0.0970026) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (0.239292) | |
| cut (0.169924) | |
| ste (0.135208) | |
| ute (0.132784) | |
| ova (0.129132) | |
| cty (0.10408) | |
| ldo (0.0970026) |